Wall clock time and date at job start Mon Mar 30 2020 01:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 S 1.81393 * 109.47041 * 120.00602 * 2 1 3 14 14 C 1.81396 * 103.00113 * 294.99698 * 13 2 1 15 15 C 1.50699 * 109.47496 * 179.97438 * 14 13 2 16 16 C 1.38244 * 120.00317 * 90.00247 * 15 14 13 17 17 C 1.38225 * 120.00877 * 180.02562 * 16 15 14 18 18 C 1.38261 * 120.02810 * 359.97438 * 17 16 15 19 19 C 1.38196 * 120.01418 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.01064 * 269.73032 * 15 14 13 21 21 Cl 1.73608 * 120.00981 * 359.97194 * 20 15 14 22 22 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 23 23 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 24 24 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 26 26 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.09000 * 109.47483 * 300.00248 * 14 13 2 29 29 H 1.09007 * 109.47229 * 60.00371 * 14 13 2 30 30 H 1.07993 * 119.99400 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.98051 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.99278 * 179.97438 * 18 17 16 33 33 H 1.07993 * 120.00506 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 16 2.1347 -0.8553 1.4810 14 6 1.5665 0.2150 2.8309 15 6 1.9974 -0.3699 4.1512 16 6 3.2182 -0.0196 4.6970 17 6 3.6138 -0.5564 5.9077 18 6 2.7886 -1.4436 6.5738 19 6 1.5675 -1.7937 6.0297 20 6 1.1690 -1.2531 4.8199 21 17 -0.3677 -1.6875 4.1388 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6054 -0.2616 -2.1370 26 1 1.7516 -1.7714 -1.2057 27 1 2.6101 -1.9094 -3.2568 28 1 2.0002 1.2082 2.7142 29 1 0.4792 0.2879 2.8038 30 1 3.8633 0.6730 4.1769 31 1 4.5678 -0.2827 6.3335 32 1 3.0984 -1.8630 7.5196 33 1 0.9229 -2.4864 6.5503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413005175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:08 Heat of formation + Delta-G solvation = -23.547635 kcal Electronic energy + Delta-G solvation = -15677.247008 eV Core-core repulsion = 13046.287932 eV Total energy + Delta-G solvation = -2630.959076 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32619 -37.39781 -36.71055 -34.18328 -33.82694 -31.68100 -29.18417 -27.93545 -25.14685 -23.68069 -22.99193 -22.17718 -18.98751 -18.07091 -17.19655 -16.74840 -16.32452 -16.19117 -15.65643 -15.35048 -14.97209 -14.75223 -14.32517 -14.09961 -13.98743 -13.40813 -13.07587 -13.02231 -12.64728 -12.60541 -12.48846 -12.29690 -12.17982 -11.98086 -11.77726 -11.62683 -10.81636 -10.63379 -10.47362 -9.84224 -9.59907 -8.66855 -8.46936 -6.32842 -0.04363 0.25099 1.05552 1.17635 1.52031 1.61102 1.79710 1.81687 2.58078 2.73604 3.20122 3.56786 3.70287 3.94980 4.03661 4.11885 4.21379 4.36445 4.40659 4.46073 4.52114 4.70910 4.75835 4.86371 4.95513 5.02636 5.12332 5.25496 5.31036 5.38583 5.46370 5.85789 5.98983 6.22298 6.59359 7.45815 8.76074 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.005254 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.190093 B = 5327.644002 C = 6189.615590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 H 0.074 0.926 4 C 0.031 3.969 5 C -0.597 4.597 6 H 0.055 0.945 7 C -0.040 4.040 8 N -0.942 5.942 9 Si 1.114 2.886 10 H -0.285 1.285 11 H -0.266 1.266 12 H -0.273 1.273 13 S -0.262 6.262 14 C -0.052 4.052 15 C -0.076 4.076 16 C -0.103 4.103 17 C -0.113 4.113 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.039 4.039 21 Cl -0.073 7.073 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.006 0.994 26 H -0.011 1.011 27 H 0.253 0.747 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.927 4.190 21.803 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 H 0.092 0.908 4 C -0.007 4.007 5 C -0.635 4.635 6 H 0.074 0.926 7 C -0.236 4.236 8 N -0.580 5.580 9 Si 0.935 3.065 10 H -0.210 1.210 11 H -0.191 1.191 12 H -0.199 1.199 13 S -0.033 6.033 14 C -0.199 4.199 15 C -0.079 4.079 16 C -0.123 4.123 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.137 4.137 20 C -0.068 4.068 21 Cl -0.044 7.044 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.008 0.992 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.155 0.845 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.194 2.803 20.853 21.154 hybrid contribution -2.501 1.319 0.100 2.829 sum -4.695 4.122 20.953 21.864 Atomic orbital electron populations 1.22027 0.92668 1.02360 1.02403 1.23017 0.98053 1.00360 0.94761 0.90779 1.18968 0.96430 0.93827 0.91483 1.22357 0.92710 1.37732 1.10725 0.92649 1.27312 1.11134 0.92804 0.92371 1.70923 1.09529 1.41857 1.35685 0.82982 0.69499 0.77538 0.76473 1.21027 1.19123 1.19869 1.87475 1.76114 1.39123 1.00541 1.22347 1.04270 1.00677 0.92617 1.19224 0.95720 0.98465 0.94447 1.21286 0.94228 1.00336 0.96498 1.21604 1.00987 0.96375 0.94161 1.21551 0.92648 0.96821 1.01036 1.21341 0.98312 1.00365 0.93665 1.21034 0.88921 1.00275 0.96531 1.98361 1.28864 1.91905 1.85312 0.91226 0.91436 0.92662 0.97621 0.99233 0.93720 0.88613 0.88815 0.84455 0.82433 0.81733 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.10 71.98 0.66 -3.97 16 2 C -0.03 -1.40 2.77 30.60 0.08 -1.31 16 3 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 4 C 0.03 1.63 3.76 29.85 0.11 1.74 16 5 C -0.60 -34.51 8.53 25.60 0.22 -34.29 16 6 H 0.06 3.16 7.60 -2.91 -0.02 3.13 16 7 C -0.04 -2.34 5.46 84.65 0.46 -1.87 16 8 N -0.94 -59.77 13.65 21.45 0.29 -59.48 16 9 Si 1.11 51.83 29.90 68.60 2.05 53.88 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 S -0.26 -10.56 20.44 -56.49 -1.15 -11.72 16 14 C -0.05 -1.54 5.37 71.24 0.38 -1.16 16 15 C -0.08 -2.06 5.14 -19.84 -0.10 -2.16 16 16 C -0.10 -2.37 9.70 22.27 0.22 -2.15 16 17 C -0.11 -1.97 10.05 22.27 0.22 -1.74 16 18 C -0.10 -1.61 10.05 22.27 0.22 -1.39 16 19 C -0.12 -2.33 9.83 22.29 0.22 -2.11 16 20 C -0.04 -0.99 6.31 22.32 0.14 -0.85 16 21 Cl -0.07 -1.92 27.29 -2.72 -0.07 -1.99 16 22 H 0.07 2.00 6.92 -2.39 -0.02 1.98 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.01 0.32 8.01 -2.39 -0.02 0.30 16 26 H -0.01 -0.62 8.00 -2.39 -0.02 -0.63 16 27 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 28 H 0.10 2.61 8.09 -2.39 -0.02 2.59 16 29 H 0.09 2.65 5.89 -2.39 -0.01 2.63 16 30 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 31 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 33 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -69.09 307.08 5.14 -63.95 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.19 Total: 6.64 kcal Atomic # 6 Polarization: -54.11 SS G_CDS: 2.84 Total: -51.27 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.29 Total: -59.48 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.88 kcal Atomic # 16 Polarization: -10.56 SS G_CDS: -1.15 Total: -11.72 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.07 Total: -1.99 kcal Total: -69.09 5.14 -63.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413005175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.401 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds