Wall clock time and date at job start Mon Mar 30 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48505 * 109.47052 * 239.99722 * 3 2 1 5 5 H 1.48496 * 109.47493 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46972 * 119.99953 * 3 2 1 7 7 C 1.37874 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99974 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00179 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.81400 * 103.00225 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47583 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 C 1.38239 * 120.00487 * 100.00100 * 14 13 12 16 16 C 1.38220 * 120.01336 * 179.97438 * 15 14 13 17 17 C 1.38259 * 120.02394 * 0.03851 * 16 15 14 18 18 C 1.38197 * 120.01707 * 359.97438 * 17 16 15 19 19 C 1.38331 * 120.00622 * 279.72913 * 14 13 12 20 20 Cl 1.73596 * 120.01445 * 359.97409 * 19 14 13 21 21 H 0.96996 * 119.99966 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47444 * 59.99722 * 9 7 2 23 23 H 1.09001 * 109.46716 * 299.99370 * 9 7 2 24 24 H 1.09002 * 109.47172 * 59.99682 * 11 10 9 25 25 H 1.09001 * 109.46713 * 299.99934 * 11 10 9 26 26 H 1.09002 * 109.47103 * 59.99669 * 12 11 10 27 27 H 1.08998 * 109.46862 * 300.00481 * 12 11 10 28 28 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 29 29 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 30 30 H 1.08002 * 119.99356 * 359.97438 * 15 14 13 31 31 H 1.08000 * 119.98661 * 180.02562 * 16 15 14 32 32 H 1.07999 * 119.99473 * 179.97438 * 17 16 15 33 33 H 1.07998 * 120.00665 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8779 0.0005 11 6 1.3518 -5.3367 0.0013 12 6 2.2086 -6.6042 0.0008 13 6 1.2992 -7.8346 0.0021 14 6 2.1432 -9.0831 0.0009 15 6 2.3598 -9.7722 1.1795 16 6 3.1335 -10.9176 1.1785 17 6 3.6918 -11.3743 -0.0010 18 6 3.4762 -10.6861 -1.1799 19 6 2.6967 -9.5428 -1.1806 20 17 2.4187 -8.6823 -2.6624 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 0.7223 -5.3237 -0.8884 25 1 0.7230 -5.3232 0.8916 26 1 2.8384 -6.6174 0.8903 27 1 2.8372 -6.6174 -0.8896 28 1 0.6690 -7.8216 -0.8872 29 1 0.6710 -7.8211 0.8927 30 1 1.9245 -9.4155 2.1013 31 1 3.3021 -11.4559 2.0995 32 1 4.2965 -12.2691 -0.0012 33 1 3.9120 -11.0433 -2.1012 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:29 Heat of formation + Delta-G solvation = -27.208671 kcal Electronic energy + Delta-G solvation = -15028.164732 eV Core-core repulsion = 12397.046902 eV Total energy + Delta-G solvation = -2631.117830 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.40872 -37.36452 -36.17990 -35.30292 -32.16147 -31.58450 -30.68537 -27.57535 -25.28627 -23.62500 -23.26411 -21.82791 -18.65751 -17.97322 -17.15997 -16.97170 -16.50315 -16.08353 -15.81013 -15.11052 -14.80917 -14.64231 -14.42253 -14.40038 -14.10764 -13.41292 -13.32148 -12.90177 -12.72719 -12.61293 -12.45757 -12.37867 -12.24552 -11.87064 -11.67570 -11.61499 -11.38123 -10.75295 -10.70202 -9.82449 -9.57932 -8.48751 -8.34336 -6.47944 0.21264 0.33017 1.03927 1.23038 1.39329 1.42707 1.51763 2.04698 2.36204 2.70320 2.99943 3.61664 3.79432 3.97646 4.09881 4.22803 4.32626 4.36800 4.45621 4.58834 4.63465 4.71306 4.87752 4.92610 4.92673 5.00861 5.07943 5.25900 5.33562 5.48930 5.53152 5.55684 5.87719 5.91771 6.59214 7.20093 8.77673 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.039278 B = 0.003167 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.696405 B = 8839.033683 C = 9090.674321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.096 3.904 10 S -0.327 6.327 11 C -0.073 4.073 12 C -0.081 4.081 13 C -0.074 4.074 14 C -0.084 4.084 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.053 4.053 20 Cl -0.080 7.080 21 H 0.271 0.729 22 H 0.012 0.988 23 H 0.015 0.985 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -24.576 0.867 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.052 4.052 10 S -0.100 6.100 11 C -0.221 4.221 12 C -0.120 4.120 13 C -0.113 4.113 14 C -0.085 4.085 15 C -0.130 4.130 16 C -0.132 4.132 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.079 4.079 20 Cl -0.051 7.051 21 H 0.080 0.920 22 H 0.030 0.970 23 H 0.033 0.967 24 H 0.092 0.908 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.164 0.836 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.574 -24.336 0.728 24.977 hybrid contribution -1.289 1.144 -0.378 1.765 sum 4.285 -23.192 0.350 23.587 Atomic orbital electron populations 1.70054 1.07716 1.28683 1.50031 1.25942 0.95911 1.03122 0.93713 0.85314 0.78217 0.77075 0.79365 1.19151 1.19957 1.18985 1.20994 0.93442 0.90308 1.53015 0.92028 1.20697 0.93959 0.92755 0.97768 1.86449 1.22068 1.03429 1.98061 1.23312 0.99984 0.94217 1.04562 1.21165 0.97406 0.90410 1.03017 1.20608 0.96719 0.89690 1.04290 1.19859 0.98988 0.97277 0.92421 1.21361 0.98944 0.95506 0.97221 1.21623 0.96072 0.95922 0.99555 1.21480 0.99686 1.00519 0.91433 1.21318 0.98061 0.93823 1.00626 1.21102 1.02998 0.96520 0.87301 1.98378 1.95311 1.76969 1.34484 0.92021 0.96993 0.96710 0.90804 0.89985 0.91121 0.91832 0.90566 0.88896 0.83555 0.82733 0.82490 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.29 21.45 0.28 -55.21 16 2 C 0.01 0.79 5.46 84.65 0.46 1.26 16 3 Si 0.98 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.76 9.13 25.60 0.23 -31.53 16 8 H 0.06 3.61 7.71 -2.91 -0.02 3.58 16 9 C 0.10 5.28 5.70 71.24 0.41 5.69 16 10 S -0.33 -14.89 21.66 -56.49 -1.22 -16.12 16 11 C -0.07 -2.47 5.94 71.98 0.43 -2.04 16 12 C -0.08 -2.25 5.16 30.59 0.16 -2.09 16 13 C -0.07 -1.63 4.80 29.85 0.14 -1.48 16 14 C -0.08 -1.74 5.14 -19.84 -0.10 -1.84 16 15 C -0.11 -1.84 9.67 22.27 0.22 -1.62 16 16 C -0.11 -1.48 10.05 22.27 0.22 -1.26 16 17 C -0.11 -1.48 10.05 22.27 0.22 -1.25 16 18 C -0.12 -2.03 9.83 22.29 0.22 -1.81 16 19 C -0.05 -1.12 6.31 22.32 0.14 -0.98 16 20 Cl -0.08 -1.89 26.66 -2.72 -0.07 -1.97 16 21 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 22 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.01 0.84 8.14 -2.39 -0.02 0.83 16 24 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 1.90 7.30 -2.39 -0.02 1.89 16 28 H 0.08 1.73 7.34 -2.39 -0.02 1.71 16 29 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 30 H 0.15 1.88 8.04 -2.91 -0.02 1.85 16 31 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -66.08 311.27 4.85 -61.23 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.08 Total: 4.58 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 2.75 Total: -38.97 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.28 Total: -55.21 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: -14.89 SS G_CDS: -1.22 Total: -16.12 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.97 kcal Total: -66.08 4.85 -61.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.024 kcal (2) G-P(sol) polarization free energy of solvation -66.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds