Wall clock time and date at job start Mon Mar 30 2020 01:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34898 * 116.99474 * 2 1 4 4 O 1.21624 * 120.00122 * 359.71459 * 3 2 1 5 5 C 1.46476 * 119.99928 * 179.97438 * 3 2 1 6 6 O 1.34937 * 125.99062 * 359.40872 * 5 3 2 7 7 C 1.33919 * 109.37728 * 179.86427 * 6 5 3 8 8 C 1.50697 * 125.61193 * 180.15828 * 7 6 5 9 9 S 1.81395 * 109.47419 * 270.28765 * 8 7 6 10 10 C 1.81395 * 103.00228 * 179.97438 * 9 8 7 11 11 C 1.50694 * 109.47351 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99979 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00253 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99623 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00163 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47253 * 60.00278 * 15 13 11 17 17 H 1.48509 * 109.47034 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47430 * 299.99979 * 15 13 11 19 19 C 1.35166 * 108.78005 * 0.40781 * 7 6 5 20 20 C 1.36635 * 125.99700 * 179.72126 * 5 3 2 21 21 C 1.50702 * 126.64815 * 359.95847 * 20 5 3 22 22 H 1.08996 * 109.47621 * 300.00233 * 1 2 3 23 23 H 1.09001 * 109.47124 * 60.00685 * 1 2 3 24 24 H 1.09002 * 109.46831 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46662 * 30.28694 * 8 7 6 26 26 H 1.08999 * 109.47087 * 150.28466 * 8 7 6 27 27 H 1.09008 * 109.46898 * 299.99886 * 10 9 8 28 28 H 1.08996 * 109.47302 * 59.99543 * 10 9 8 29 29 H 0.97008 * 119.99786 * 179.97438 * 14 13 11 30 30 H 1.07999 * 126.43887 * 179.74068 * 19 7 6 31 31 H 1.09000 * 109.47202 * 89.99766 * 21 20 5 32 32 H 1.08998 * 109.46950 * 209.99918 * 21 20 5 33 33 H 1.09000 * 109.47215 * 329.99766 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2020 0.0000 4 8 1.4019 2.2220 -0.0052 5 6 3.5271 1.2788 0.0006 6 8 4.3762 0.2301 0.0124 7 6 5.6376 0.6797 0.0059 8 6 6.8755 -0.1797 0.0117 9 16 7.3705 -0.5156 1.7242 10 6 8.8508 -1.5452 1.5266 11 6 9.3913 -1.9136 2.8842 12 1 8.8943 -1.5630 3.7767 13 6 10.5204 -2.6982 2.9871 14 7 11.1259 -3.1247 1.9003 15 14 11.1908 -3.1542 4.6699 16 1 10.1592 -3.9092 5.4257 17 1 12.4026 -3.9973 4.5081 18 1 11.5438 -1.9184 5.4137 19 6 5.6179 2.0312 -0.0012 20 6 4.2711 2.4248 -0.0047 21 6 3.7468 3.8376 -0.0131 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 6.6669 -1.1207 -0.4974 26 1 7.6820 0.3414 -0.5041 27 1 8.5923 -2.4520 0.9797 28 1 9.6081 -0.9903 0.9728 29 1 11.9205 -3.6764 1.9726 30 1 6.4773 2.6853 -0.0036 31 1 3.6190 4.1839 1.0125 32 1 4.4554 4.4851 -0.5296 33 1 2.7867 3.8659 -0.5284 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413010113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:26 Heat of formation + Delta-G solvation = -82.497724 kcal Electronic energy + Delta-G solvation = -17437.974025 eV Core-core repulsion = 14363.749517 eV Total energy + Delta-G solvation = -3074.224508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.80680 -40.30490 -36.76902 -34.18385 -33.21186 -32.52106 -28.87918 -28.62073 -28.03681 -26.71773 -23.25193 -22.34119 -21.51380 -19.85232 -18.33656 -17.13574 -16.99197 -16.63682 -16.03098 -15.62310 -15.01098 -14.51012 -14.17787 -13.96885 -13.50420 -13.33696 -13.18038 -12.90333 -12.75578 -12.63027 -12.44683 -12.33439 -12.14917 -11.77869 -11.04763 -10.88989 -10.83223 -10.77974 -10.28332 -9.73593 -9.64423 -9.03772 -8.66343 -8.48487 -6.84808 -6.25044 -4.29928 0.67919 1.86841 2.19823 2.71722 2.79931 2.94209 3.25746 3.28936 3.33160 3.68436 4.31374 4.43370 4.63154 4.71319 4.86458 4.94983 5.12363 5.20892 5.25827 5.29986 5.42216 5.55725 5.59238 5.68145 5.86984 5.95277 6.12605 6.32032 6.84472 6.99485 7.01084 7.50042 7.69046 7.93070 8.71510 9.33643 10.86081 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.031805 B = 0.003437 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.147647 B = 8143.651342 C = 8546.192075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.348 6.348 3 C 0.557 3.443 4 O -0.492 6.492 5 C -0.087 4.087 6 O -0.143 6.143 7 C 0.079 3.921 8 C -0.031 4.031 9 S -0.279 6.279 10 C 0.089 3.911 11 C -0.515 4.515 12 H 0.068 0.932 13 C 0.067 3.933 14 N -0.892 5.892 15 Si 0.908 3.092 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.214 4.214 20 C -0.062 4.062 21 C -0.097 4.097 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.267 0.733 30 H 0.163 0.837 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.692 9.040 -6.622 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.264 6.264 3 C 0.403 3.597 4 O -0.383 6.383 5 C -0.138 4.138 6 O -0.038 6.038 7 C 0.025 3.975 8 C -0.177 4.177 9 S -0.051 6.051 10 C -0.058 4.058 11 C -0.555 4.555 12 H 0.086 0.914 13 C -0.137 4.137 14 N -0.530 5.530 15 Si 0.735 3.265 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.236 4.236 20 C -0.064 4.064 21 C -0.153 4.153 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.181 0.819 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.345 9.217 -5.764 19.630 hybrid contribution 0.947 -0.683 -0.275 1.199 sum -15.399 8.534 -6.040 18.612 Atomic orbital electron populations 1.23335 0.75581 1.04070 1.02682 1.86700 1.23785 1.31861 1.84040 1.19142 0.85457 0.82007 0.73045 1.90891 1.64434 1.35720 1.47230 1.20310 0.87677 0.85945 1.19837 1.84109 1.15127 1.34200 1.70412 1.22178 0.83226 0.93471 0.98639 1.21822 0.92544 1.01481 1.01902 1.87075 1.41619 1.70832 1.05559 1.21147 0.88386 0.94666 1.01563 1.20601 1.11201 1.32721 0.90935 0.91435 1.24953 0.95999 0.95192 0.97580 1.69940 1.20015 1.35086 1.27980 0.86384 0.78304 0.78668 0.83149 1.19841 1.21008 1.19848 1.21462 0.97150 0.94090 1.10865 1.20608 0.92413 0.95631 0.97760 1.20480 1.01998 0.89629 1.03213 0.91588 0.91678 0.87747 0.88327 0.87018 0.94275 0.94243 0.92337 0.81930 0.90349 0.90897 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.35 -4.53 10.58 -42.48 -0.45 -4.98 16 3 C 0.56 7.92 7.93 34.05 0.27 8.19 16 4 O -0.49 -7.12 14.53 -19.36 -0.28 -7.40 16 5 C -0.09 -1.32 7.18 -36.84 -0.26 -1.58 16 6 O -0.14 -2.36 10.67 4.72 0.05 -2.31 16 7 C 0.08 1.24 6.57 -35.40 -0.23 1.00 16 8 C -0.03 -0.50 6.47 36.00 0.23 -0.26 16 9 S -0.28 -5.91 21.64 -107.50 -2.33 -8.23 16 10 C 0.09 2.23 5.70 36.00 0.21 2.43 16 11 C -0.52 -14.22 9.13 -34.44 -0.31 -14.54 16 12 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 15 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 19 C -0.21 -2.95 10.72 -39.89 -0.43 -3.38 16 20 C -0.06 -0.85 6.20 -104.42 -0.65 -1.49 16 21 C -0.10 -1.04 9.81 36.01 0.35 -0.69 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 26 H 0.11 1.58 8.14 -51.92 -0.42 1.16 16 27 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.94 6.45 -51.93 -0.33 0.61 16 LS Contribution 311.11 15.07 4.69 4.69 Total: -1.00 -30.54 311.11 -6.56 -37.10 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -4.10 Total: -3.03 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 0.14 Total: -7.20 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.74 Total: -24.65 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.68 Total: -14.69 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -2.33 Total: -8.23 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.54 -6.56 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.399 kcal (2) G-P(sol) polarization free energy of solvation -30.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds