Wall clock time and date at job start Mon Mar 30 2020 01:17:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45202 * 1
3 3 C 1.34898 * 116.99474 * 2 1
4 4 O 1.21624 * 120.00122 * 359.71459 * 3 2 1
5 5 C 1.46476 * 119.99928 * 179.97438 * 3 2 1
6 6 O 1.34937 * 125.99062 * 359.40872 * 5 3 2
7 7 C 1.33919 * 109.37728 * 179.86427 * 6 5 3
8 8 C 1.50697 * 125.61193 * 180.15828 * 7 6 5
9 9 S 1.81395 * 109.47419 * 270.28765 * 8 7 6
10 10 C 1.81395 * 103.00228 * 179.97438 * 9 8 7
11 11 C 1.50694 * 109.47351 * 179.97438 * 10 9 8
12 12 H 1.08000 * 119.99979 * 359.97438 * 11 10 9
13 13 C 1.37878 * 120.00253 * 179.97438 * 11 10 9
14 14 N 1.31516 * 119.99623 * 0.02562 * 13 11 10
15 15 Si 1.86794 * 120.00163 * 179.97438 * 13 11 10
16 16 H 1.48504 * 109.47253 * 60.00278 * 15 13 11
17 17 H 1.48509 * 109.47034 * 180.02562 * 15 13 11
18 18 H 1.48498 * 109.47430 * 299.99979 * 15 13 11
19 19 C 1.35166 * 108.78005 * 0.40781 * 7 6 5
20 20 C 1.36635 * 125.99700 * 179.72126 * 5 3 2
21 21 C 1.50702 * 126.64815 * 359.95847 * 20 5 3
22 22 H 1.08996 * 109.47621 * 300.00233 * 1 2 3
23 23 H 1.09001 * 109.47124 * 60.00685 * 1 2 3
24 24 H 1.09002 * 109.46831 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.46662 * 30.28694 * 8 7 6
26 26 H 1.08999 * 109.47087 * 150.28466 * 8 7 6
27 27 H 1.09008 * 109.46898 * 299.99886 * 10 9 8
28 28 H 1.08996 * 109.47302 * 59.99543 * 10 9 8
29 29 H 0.97008 * 119.99786 * 179.97438 * 14 13 11
30 30 H 1.07999 * 126.43887 * 179.74068 * 19 7 6
31 31 H 1.09000 * 109.47202 * 89.99766 * 21 20 5
32 32 H 1.08998 * 109.46950 * 209.99918 * 21 20 5
33 33 H 1.09000 * 109.47215 * 329.99766 * 21 20 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0643 1.2020 0.0000
4 8 1.4019 2.2220 -0.0052
5 6 3.5271 1.2788 0.0006
6 8 4.3762 0.2301 0.0124
7 6 5.6376 0.6797 0.0059
8 6 6.8755 -0.1797 0.0117
9 16 7.3705 -0.5156 1.7242
10 6 8.8508 -1.5452 1.5266
11 6 9.3913 -1.9136 2.8842
12 1 8.8943 -1.5630 3.7767
13 6 10.5204 -2.6982 2.9871
14 7 11.1259 -3.1247 1.9003
15 14 11.1908 -3.1542 4.6699
16 1 10.1592 -3.9092 5.4257
17 1 12.4026 -3.9973 4.5081
18 1 11.5438 -1.9184 5.4137
19 6 5.6179 2.0312 -0.0012
20 6 4.2711 2.4248 -0.0047
21 6 3.7468 3.8376 -0.0131
22 1 -0.3634 0.5138 0.8899
23 1 -0.3633 0.5137 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 6.6669 -1.1207 -0.4974
26 1 7.6820 0.3414 -0.5041
27 1 8.5923 -2.4520 0.9797
28 1 9.6081 -0.9903 0.9728
29 1 11.9205 -3.6764 1.9726
30 1 6.4773 2.6853 -0.0036
31 1 3.6190 4.1839 1.0125
32 1 4.4554 4.4851 -0.5296
33 1 2.7867 3.8659 -0.5284
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000413010113.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:17:26
Heat of formation + Delta-G solvation = -82.497724 kcal
Electronic energy + Delta-G solvation = -17437.974025 eV
Core-core repulsion = 14363.749517 eV
Total energy + Delta-G solvation = -3074.224508 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.076 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-42.80680 -40.30490 -36.76902 -34.18385 -33.21186 -32.52106 -28.87918 -28.62073
-28.03681 -26.71773 -23.25193 -22.34119 -21.51380 -19.85232 -18.33656 -17.13574
-16.99197 -16.63682 -16.03098 -15.62310 -15.01098 -14.51012 -14.17787 -13.96885
-13.50420 -13.33696 -13.18038 -12.90333 -12.75578 -12.63027 -12.44683 -12.33439
-12.14917 -11.77869 -11.04763 -10.88989 -10.83223 -10.77974 -10.28332 -9.73593
-9.64423 -9.03772 -8.66343 -8.48487 -6.84808 -6.25044 -4.29928 0.67919
1.86841 2.19823 2.71722 2.79931 2.94209 3.25746 3.28936 3.33160
3.68436 4.31374 4.43370 4.63154 4.71319 4.86458 4.94983 5.12363
5.20892 5.25827 5.29986 5.42216 5.55725 5.59238 5.68145 5.86984
5.95277 6.12605 6.32032 6.84472 6.99485 7.01084 7.50042 7.69046
7.93070 8.71510 9.33643 10.86081
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.031805 B = 0.003437 C = 0.003276
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 880.147647 B = 8143.651342 C = 8546.192075
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.037 3.963
2 O -0.348 6.348
3 C 0.557 3.443
4 O -0.492 6.492
5 C -0.087 4.087
6 O -0.143 6.143
7 C 0.079 3.921
8 C -0.031 4.031
9 S -0.279 6.279
10 C 0.089 3.911
11 C -0.515 4.515
12 H 0.068 0.932
13 C 0.067 3.933
14 N -0.892 5.892
15 Si 0.908 3.092
16 H -0.273 1.273
17 H -0.285 1.285
18 H -0.273 1.273
19 C -0.214 4.214
20 C -0.062 4.062
21 C -0.097 4.097
22 H 0.065 0.935
23 H 0.064 0.936
24 H 0.104 0.896
25 H 0.098 0.902
26 H 0.112 0.888
27 H 0.039 0.961
28 H 0.039 0.961
29 H 0.267 0.733
30 H 0.163 0.837
31 H 0.078 0.922
32 H 0.072 0.928
33 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.692 9.040 -6.622 19.282
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.264 6.264
3 C 0.403 3.597
4 O -0.383 6.383
5 C -0.138 4.138
6 O -0.038 6.038
7 C 0.025 3.975
8 C -0.177 4.177
9 S -0.051 6.051
10 C -0.058 4.058
11 C -0.555 4.555
12 H 0.086 0.914
13 C -0.137 4.137
14 N -0.530 5.530
15 Si 0.735 3.265
16 H -0.198 1.198
17 H -0.210 1.210
18 H -0.198 1.198
19 C -0.236 4.236
20 C -0.064 4.064
21 C -0.153 4.153
22 H 0.084 0.916
23 H 0.083 0.917
24 H 0.123 0.877
25 H 0.117 0.883
26 H 0.130 0.870
27 H 0.057 0.943
28 H 0.058 0.942
29 H 0.077 0.923
30 H 0.181 0.819
31 H 0.097 0.903
32 H 0.091 0.909
33 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -16.345 9.217 -5.764 19.630
hybrid contribution 0.947 -0.683 -0.275 1.199
sum -15.399 8.534 -6.040 18.612
Atomic orbital electron populations
1.23335 0.75581 1.04070 1.02682 1.86700 1.23785 1.31861 1.84040
1.19142 0.85457 0.82007 0.73045 1.90891 1.64434 1.35720 1.47230
1.20310 0.87677 0.85945 1.19837 1.84109 1.15127 1.34200 1.70412
1.22178 0.83226 0.93471 0.98639 1.21822 0.92544 1.01481 1.01902
1.87075 1.41619 1.70832 1.05559 1.21147 0.88386 0.94666 1.01563
1.20601 1.11201 1.32721 0.90935 0.91435 1.24953 0.95999 0.95192
0.97580 1.69940 1.20015 1.35086 1.27980 0.86384 0.78304 0.78668
0.83149 1.19841 1.21008 1.19848 1.21462 0.97150 0.94090 1.10865
1.20608 0.92413 0.95631 0.97760 1.20480 1.01998 0.89629 1.03213
0.91588 0.91678 0.87747 0.88327 0.87018 0.94275 0.94243 0.92337
0.81930 0.90349 0.90897 0.89764
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.31 10.57 101.05 1.07 1.38 16
2 O -0.35 -4.53 10.58 -42.48 -0.45 -4.98 16
3 C 0.56 7.92 7.93 34.05 0.27 8.19 16
4 O -0.49 -7.12 14.53 -19.36 -0.28 -7.40 16
5 C -0.09 -1.32 7.18 -36.84 -0.26 -1.58 16
6 O -0.14 -2.36 10.67 4.72 0.05 -2.31 16
7 C 0.08 1.24 6.57 -35.40 -0.23 1.00 16
8 C -0.03 -0.50 6.47 36.00 0.23 -0.26 16
9 S -0.28 -5.91 21.64 -107.50 -2.33 -8.23 16
10 C 0.09 2.23 5.70 36.00 0.21 2.43 16
11 C -0.52 -14.22 9.13 -34.44 -0.31 -14.54 16
12 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16
13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16
14 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16
15 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16
16 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16
17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16
19 C -0.21 -2.95 10.72 -39.89 -0.43 -3.38 16
20 C -0.06 -0.85 6.20 -104.42 -0.65 -1.49 16
21 C -0.10 -1.04 9.81 36.01 0.35 -0.69 16
22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
25 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16
26 H 0.11 1.58 8.14 -51.92 -0.42 1.16 16
27 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16
28 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16
29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16
30 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16
31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
33 H 0.08 0.94 6.45 -51.93 -0.33 0.61 16
LS Contribution 311.11 15.07 4.69 4.69
Total: -1.00 -30.54 311.11 -6.56 -37.10
By element:
Atomic # 1 Polarization: 1.07 SS G_CDS: -4.10 Total: -3.03 kcal
Atomic # 6 Polarization: -7.34 SS G_CDS: 0.14 Total: -7.20 kcal
Atomic # 7 Polarization: -25.39 SS G_CDS: 0.74 Total: -24.65 kcal
Atomic # 8 Polarization: -14.01 SS G_CDS: -0.68 Total: -14.69 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal
Atomic # 16 Polarization: -5.91 SS G_CDS: -2.33 Total: -8.23 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -30.54 -6.56 -37.10 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000413010113.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.399 kcal
(2) G-P(sol) polarization free energy of solvation -30.539 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.099 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.498 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds