Wall clock time and date at job start Mon Mar 30 2020 00:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48509 * 109.47102 * 239.99992 * 3 2 1 5 5 H 1.48502 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47361 * 120.00202 * 3 2 1 7 7 C 1.37877 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99536 * 0.02562 * 7 2 1 10 10 S 1.81407 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.81393 * 102.99998 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47035 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47270 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47104 * 179.97438 * 13 12 11 15 15 C 1.38239 * 119.98824 * 270.29704 * 14 13 12 16 16 C 1.38212 * 120.01553 * 180.25745 * 15 14 13 17 17 C 1.38361 * 119.98341 * 359.46433 * 16 15 14 18 18 Cl 1.73597 * 120.00859 * 180.27890 * 17 16 15 19 19 C 1.38346 * 119.97306 * 0.25744 * 17 16 15 20 20 C 1.38210 * 119.98768 * 0.02562 * 19 17 16 21 21 H 0.97002 * 119.99886 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47485 * 59.99900 * 9 7 2 23 23 H 1.09004 * 109.46998 * 299.99662 * 9 7 2 24 24 H 1.08993 * 109.47225 * 60.00041 * 11 10 9 25 25 H 1.09001 * 109.47405 * 299.99721 * 11 10 9 26 26 H 1.09004 * 109.47434 * 59.99563 * 12 11 10 27 27 H 1.09000 * 109.47226 * 300.00178 * 12 11 10 28 28 H 1.08993 * 109.47106 * 59.99875 * 13 12 11 29 29 H 1.08996 * 109.46854 * 299.99533 * 13 12 11 30 30 H 1.08004 * 119.99430 * 359.97438 * 15 14 13 31 31 H 1.08002 * 120.01126 * 179.75014 * 16 15 14 32 32 H 1.08002 * 120.00348 * 180.02562 * 19 17 16 33 33 H 1.08002 * 119.99295 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8780 0.0005 11 6 1.3516 -5.3366 0.0013 12 6 2.2084 -6.6042 0.0020 13 6 1.2990 -7.8346 0.0034 14 6 2.1430 -9.0831 0.0034 15 6 2.5342 -9.6527 -1.1938 16 6 3.3038 -10.8007 -1.1945 17 6 3.6919 -11.3736 0.0037 18 17 4.6646 -12.8115 0.0036 19 6 3.3049 -10.7999 1.2016 20 6 2.5304 -9.6551 1.2008 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8904 24 1 0.7222 -5.3236 -0.8884 25 1 0.7227 -5.3232 0.8915 26 1 2.8377 -6.6170 0.8920 27 1 2.8377 -6.6180 -0.8879 28 1 0.6695 -7.8220 -0.8863 29 1 0.6702 -7.8206 0.8936 30 1 2.2346 -9.2031 -2.1290 31 1 3.6061 -11.2479 -2.1299 32 1 3.6079 -11.2464 2.1371 33 1 2.2279 -9.2074 2.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413011360.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:31 Heat of formation + Delta-G solvation = -15.391934 kcal Electronic energy + Delta-G solvation = -14715.636839 eV Core-core repulsion = 12085.031421 eV Total energy + Delta-G solvation = -2630.605418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.69574 -36.85574 -34.98517 -33.14173 -31.32361 -30.98603 -28.52996 -26.47958 -23.27893 -23.10272 -22.11781 -20.89365 -17.37528 -16.50009 -16.03137 -15.71217 -15.13134 -14.77461 -14.55149 -14.02204 -13.77991 -13.77288 -13.22904 -12.67878 -12.53907 -12.26160 -12.03887 -11.90688 -11.63099 -11.35754 -11.22768 -11.08154 -10.86664 -10.64821 -10.63386 -9.90823 -9.55228 -9.30226 -8.85137 -8.75419 -8.60882 -6.68438 -6.19163 -4.23255 0.87890 1.03351 1.87204 2.66759 3.28312 3.31265 3.35594 3.37794 3.89543 4.35723 4.49041 4.54280 4.62765 4.93943 5.07602 5.17840 5.19175 5.26410 5.32524 5.51511 5.53042 5.70357 5.76868 5.93330 5.96219 6.00414 6.11765 6.35144 6.39317 6.55757 7.10086 7.11463 7.75356 8.02026 8.78403 9.39670 10.92157 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.058402 B = 0.002476 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.320869 B =11304.523530 C =11463.218827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.093 3.907 10 S -0.315 6.315 11 C -0.089 4.089 12 C -0.092 4.092 13 C -0.081 4.081 14 C -0.068 4.068 15 C -0.105 4.105 16 C -0.109 4.109 17 C -0.043 4.043 18 Cl -0.078 7.078 19 C -0.109 4.109 20 C -0.105 4.105 21 H 0.266 0.734 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -23.057 0.010 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.085 0.915 9 C -0.054 4.054 10 S -0.088 6.088 11 C -0.237 4.237 12 C -0.131 4.131 13 C -0.120 4.120 14 C -0.069 4.069 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.069 4.069 18 Cl -0.049 7.049 19 C -0.127 4.127 20 C -0.123 4.123 21 H 0.075 0.925 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.606 -23.020 0.009 23.476 hybrid contribution -0.876 0.722 0.000 1.135 sum 3.730 -22.297 0.009 22.607 Atomic orbital electron populations 1.69945 1.06144 1.27422 1.49712 1.24971 0.94982 0.99292 0.94679 0.86408 0.79397 0.81847 0.78973 1.19902 1.21066 1.19897 1.20662 0.93443 0.88817 1.52243 0.91537 1.21014 0.93557 0.90834 0.99945 1.86626 1.21621 1.02530 1.98065 1.23208 1.00478 0.96008 1.04001 1.21286 0.97454 0.90905 1.03440 1.20710 0.96951 0.90783 1.03531 1.20087 0.97449 0.96364 0.92975 1.21080 0.97759 0.95072 0.98367 1.21051 0.98569 0.96273 0.96841 1.20924 0.99391 0.91256 0.95355 1.98365 1.69883 1.37688 1.98978 1.21046 0.98530 0.96312 0.96844 1.21081 0.97727 0.95111 0.98363 0.92465 0.94719 0.94710 0.90983 0.90988 0.91081 0.91078 0.90514 0.90507 0.84925 0.85038 0.85039 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -14.57 9.13 -34.44 -0.31 -14.89 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.49 16 9 C 0.09 2.44 5.70 36.01 0.21 2.65 16 10 S -0.32 -6.86 21.66 -107.50 -2.33 -9.19 16 11 C -0.09 -1.43 5.94 37.16 0.22 -1.21 16 12 C -0.09 -1.18 5.20 -26.73 -0.14 -1.32 16 13 C -0.08 -0.81 5.34 -27.88 -0.15 -0.96 16 14 C -0.07 -0.67 5.13 -104.62 -0.54 -1.21 16 15 C -0.10 -0.97 9.70 -39.59 -0.38 -1.36 16 16 C -0.11 -1.00 9.83 -39.55 -0.39 -1.38 16 17 C -0.04 -0.41 6.32 -39.50 -0.25 -0.66 16 18 Cl -0.08 -0.71 28.96 -51.86 -1.50 -2.21 16 19 C -0.11 -1.00 9.83 -39.55 -0.39 -1.38 16 20 C -0.10 -0.97 9.70 -39.59 -0.38 -1.36 16 21 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 23 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -29.62 315.32 -10.58 -40.20 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.61 Total: -3.26 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.61 Total: -21.36 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -6.86 SS G_CDS: -2.33 Total: -9.19 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.62 -10.58 -40.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011360.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.803 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds