Wall clock time and date at job start Mon Mar 30 2020 00:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48509 * 109.47102 * 239.99992 * 3 2 1 5 5 H 1.48502 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47361 * 120.00202 * 3 2 1 7 7 C 1.37877 * 120.00340 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99536 * 0.02562 * 7 2 1 10 10 S 1.81407 * 109.47127 * 179.97438 * 9 7 2 11 11 C 1.81393 * 102.99998 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47035 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47270 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47104 * 179.97438 * 13 12 11 15 15 C 1.38239 * 119.98824 * 270.29704 * 14 13 12 16 16 C 1.38212 * 120.01553 * 180.25745 * 15 14 13 17 17 C 1.38361 * 119.98341 * 359.46433 * 16 15 14 18 18 Cl 1.73597 * 120.00859 * 180.27890 * 17 16 15 19 19 C 1.38346 * 119.97306 * 0.25744 * 17 16 15 20 20 C 1.38210 * 119.98768 * 0.02562 * 19 17 16 21 21 H 0.97002 * 119.99886 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47485 * 59.99900 * 9 7 2 23 23 H 1.09004 * 109.46998 * 299.99662 * 9 7 2 24 24 H 1.08993 * 109.47225 * 60.00041 * 11 10 9 25 25 H 1.09001 * 109.47405 * 299.99721 * 11 10 9 26 26 H 1.09004 * 109.47434 * 59.99563 * 12 11 10 27 27 H 1.09000 * 109.47226 * 300.00178 * 12 11 10 28 28 H 1.08993 * 109.47106 * 59.99875 * 13 12 11 29 29 H 1.08996 * 109.46854 * 299.99533 * 13 12 11 30 30 H 1.08004 * 119.99430 * 359.97438 * 15 14 13 31 31 H 1.08002 * 120.01126 * 179.75014 * 16 15 14 32 32 H 1.08002 * 120.00348 * 180.02562 * 19 17 16 33 33 H 1.08002 * 119.99295 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8780 0.0005 11 6 1.3516 -5.3366 0.0013 12 6 2.2084 -6.6042 0.0020 13 6 1.2990 -7.8346 0.0034 14 6 2.1430 -9.0831 0.0034 15 6 2.5342 -9.6527 -1.1938 16 6 3.3038 -10.8007 -1.1945 17 6 3.6919 -11.3736 0.0037 18 17 4.6646 -12.8115 0.0036 19 6 3.3049 -10.7999 1.2016 20 6 2.5304 -9.6551 1.2008 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5566 0.8904 24 1 0.7222 -5.3236 -0.8884 25 1 0.7227 -5.3232 0.8915 26 1 2.8377 -6.6170 0.8920 27 1 2.8377 -6.6180 -0.8879 28 1 0.6695 -7.8220 -0.8863 29 1 0.6702 -7.8206 0.8936 30 1 2.2346 -9.2031 -2.1290 31 1 3.6061 -11.2479 -2.1299 32 1 3.6079 -11.2464 2.1371 33 1 2.2279 -9.2074 2.1360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413011360.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:30 Heat of formation + Delta-G solvation = -28.615223 kcal Electronic energy + Delta-G solvation = -14716.210244 eV Core-core repulsion = 12085.031421 eV Total energy + Delta-G solvation = -2631.178823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39663 -37.57533 -35.92938 -35.29230 -31.99915 -31.89984 -30.67006 -27.44849 -25.26542 -23.78341 -23.20178 -21.75651 -18.64594 -18.06594 -17.17183 -16.84730 -16.50821 -16.02202 -15.83669 -14.98989 -14.77880 -14.48566 -14.45730 -14.34004 -14.31496 -13.62927 -13.29217 -13.00868 -12.72585 -12.61582 -12.44330 -12.25916 -12.08677 -11.81958 -11.79892 -11.60277 -11.38417 -10.74479 -10.67900 -9.98483 -9.50175 -8.47045 -8.33598 -6.46896 0.15203 0.35130 1.06459 1.17079 1.40222 1.43159 1.52286 2.06892 2.36775 2.66085 3.00774 3.69322 3.80640 3.98268 3.99978 4.28256 4.33836 4.37926 4.43196 4.62288 4.67179 4.75002 4.93283 4.94339 4.94379 5.00203 5.13739 5.28086 5.28649 5.31548 5.56509 5.64664 5.87274 5.88969 6.60244 7.21103 8.78164 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.058402 B = 0.002476 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.320869 B =11304.523530 C =11463.218827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.014 3.986 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.095 3.905 10 S -0.332 6.332 11 C -0.075 4.075 12 C -0.082 4.082 13 C -0.070 4.070 14 C -0.079 4.079 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.053 4.053 18 Cl -0.077 7.077 19 C -0.115 4.115 20 C -0.110 4.110 21 H 0.271 0.729 22 H 0.014 0.986 23 H 0.014 0.986 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 -23.666 0.012 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.079 0.921 9 C -0.052 4.052 10 S -0.104 6.104 11 C -0.223 4.223 12 C -0.121 4.121 13 C -0.109 4.109 14 C -0.080 4.080 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.080 4.080 18 Cl -0.048 7.048 19 C -0.134 4.134 20 C -0.128 4.128 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.032 0.968 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.065 -23.638 0.011 24.174 hybrid contribution -1.029 0.769 -0.001 1.284 sum 4.036 -22.869 0.010 23.222 Atomic orbital electron populations 1.70048 1.07664 1.28646 1.50044 1.25927 0.95913 1.03086 0.93782 0.85329 0.78221 0.77180 0.79330 1.19123 1.20027 1.19111 1.20993 0.93412 0.90364 1.52942 0.92093 1.20696 0.93939 0.92744 0.97816 1.86475 1.22218 1.03681 1.98075 1.23360 1.00025 0.94123 1.04767 1.21209 0.97381 0.90361 1.03159 1.20600 0.96463 0.89243 1.04635 1.20117 0.97934 0.96490 0.93419 1.21292 0.97534 0.95098 0.98862 1.21258 0.98465 0.96320 0.97350 1.21116 0.99588 0.91471 0.95821 1.98364 1.69858 1.37618 1.98989 1.21254 0.98426 0.96360 0.97353 1.21294 0.97500 0.95132 0.98858 0.92049 0.96800 0.96788 0.90231 0.90236 0.91397 0.91391 0.89478 0.89469 0.83647 0.83764 0.83764 0.83642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.58 13.29 21.45 0.28 -54.30 16 2 C 0.01 0.77 5.46 84.65 0.46 1.24 16 3 Si 0.98 43.79 29.54 68.60 2.03 45.82 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.14 9.13 25.60 0.23 -30.91 16 8 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 9 C 0.10 5.13 5.70 71.24 0.41 5.53 16 10 S -0.33 -14.44 21.66 -56.49 -1.22 -15.66 16 11 C -0.07 -2.31 5.94 71.98 0.43 -1.88 16 12 C -0.08 -1.96 5.20 30.59 0.16 -1.80 16 13 C -0.07 -1.23 5.34 29.85 0.16 -1.07 16 14 C -0.08 -1.39 5.13 -19.86 -0.10 -1.49 16 15 C -0.11 -1.83 9.70 22.26 0.22 -1.62 16 16 C -0.12 -1.93 9.83 22.29 0.22 -1.71 16 17 C -0.05 -0.95 6.32 22.32 0.14 -0.81 16 18 Cl -0.08 -1.30 28.96 -2.72 -0.08 -1.38 16 19 C -0.12 -1.93 9.83 22.29 0.22 -1.71 16 20 C -0.11 -1.83 9.70 22.26 0.22 -1.61 16 21 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 22 H 0.01 0.77 8.14 -2.39 -0.02 0.76 16 23 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 29 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 30 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 31 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -63.49 315.32 4.85 -58.64 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.08 Total: 4.72 kcal Atomic # 6 Polarization: -40.59 SS G_CDS: 2.76 Total: -37.84 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.28 Total: -54.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -14.44 SS G_CDS: -1.22 Total: -15.66 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.38 kcal Total: -63.49 4.85 -58.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413011360.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.029 kcal (2) G-P(sol) polarization free energy of solvation -63.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds