Wall clock time and date at job start Mon Mar 30 2020 01:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47003 * 2 1 4 4 H 1.08998 * 109.47468 * 54.89309 * 3 2 1 5 5 S 1.81398 * 109.47172 * 174.89964 * 3 2 1 6 6 C 1.81402 * 103.00037 * 292.00860 * 5 3 2 7 7 C 1.50701 * 109.47418 * 176.79270 * 6 5 3 8 8 H 1.08001 * 119.99601 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99729 * 180.02562 * 7 6 5 10 10 N 1.31503 * 120.00493 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99561 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47222 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47236 * 119.99897 * 11 9 7 14 14 H 1.48505 * 109.47331 * 239.99956 * 11 9 7 15 15 C 1.50707 * 109.47010 * 294.89611 * 3 2 1 16 16 C 1.38247 * 119.98309 * 120.00323 * 15 3 2 17 17 C 1.38212 * 120.00863 * 179.97438 * 16 15 3 18 18 C 1.38351 * 119.99128 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 120.01523 * 180.02562 * 18 17 16 20 20 C 1.38353 * 119.96984 * 0.27561 * 18 17 16 21 21 C 1.38216 * 119.98622 * 359.40344 * 20 18 17 22 22 H 1.09001 * 109.47436 * 305.96130 * 1 2 3 23 23 H 1.09002 * 109.47023 * 65.95451 * 1 2 3 24 24 H 1.08998 * 109.47023 * 185.95285 * 1 2 3 25 25 H 1.09004 * 109.47302 * 240.00100 * 2 1 3 26 26 H 1.09001 * 109.47321 * 119.99723 * 2 1 3 27 27 H 1.09000 * 109.46932 * 296.79547 * 6 5 3 28 28 H 1.09001 * 109.47107 * 56.79164 * 6 5 3 29 29 H 0.97003 * 120.00445 * 180.02562 * 10 9 7 30 30 H 1.07999 * 119.99363 * 359.97438 * 16 15 3 31 31 H 1.08002 * 120.00518 * 180.02562 * 17 16 15 32 32 H 1.08005 * 120.00780 * 179.72505 * 20 18 17 33 33 H 1.08003 * 119.99227 * 180.32151 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6039 1.9821 0.8407 5 16 3.8475 1.4448 0.1520 6 6 4.1160 0.8318 1.8381 7 6 5.5951 0.7000 2.0952 8 1 6.3028 0.9595 1.3218 9 6 6.0446 0.2482 3.3178 10 7 5.1829 -0.0683 4.2593 11 14 7.8780 0.0855 3.6366 12 1 8.6300 0.5024 2.4259 13 1 8.2606 0.9532 4.7794 14 1 8.2011 -1.3278 3.9584 15 6 1.6434 2.1155 -1.2888 16 6 0.8422 3.2418 -1.2621 17 6 0.4787 3.8597 -2.4437 18 6 0.9163 3.3506 -3.6535 19 17 0.4606 4.1266 -5.1380 20 6 1.7129 2.2198 -3.6798 21 6 2.0813 1.6066 -2.4972 22 1 -0.3634 0.6035 0.8318 23 1 -0.3633 0.4187 -0.9385 24 1 -0.3633 -1.0221 0.1066 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.6840 1.5326 2.5525 28 1 3.6394 -0.1420 1.9509 29 1 5.4992 -0.3858 5.1196 30 1 0.5003 3.6388 -0.3177 31 1 -0.1469 4.7398 -2.4228 32 1 2.0513 1.8193 -4.6241 33 1 2.7075 0.7268 -2.5174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:40 Heat of formation + Delta-G solvation = -10.038272 kcal Electronic energy + Delta-G solvation = -15576.403253 eV Core-core repulsion = 12946.029987 eV Total energy + Delta-G solvation = -2630.373266 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.51464 -36.68689 -34.88356 -33.17460 -31.09501 -30.51364 -28.54497 -26.53544 -23.17695 -23.07256 -22.24349 -20.40023 -17.26627 -16.57260 -15.84097 -15.62924 -14.93969 -14.64939 -14.38050 -13.85525 -13.51351 -13.28252 -12.95275 -12.93481 -12.44080 -12.18323 -11.81522 -11.75443 -11.52790 -11.40520 -11.00359 -10.92644 -10.82049 -10.66075 -10.53255 -9.92507 -9.59557 -9.05500 -8.85649 -8.64185 -8.43838 -6.74271 -6.21869 -4.25965 1.07222 1.29856 2.06955 2.60171 3.23375 3.30859 3.36975 3.70125 3.81377 4.33724 4.69968 4.79976 4.85981 5.09121 5.15448 5.30208 5.35971 5.40306 5.55312 5.64805 5.74532 5.92695 5.97224 6.13606 6.18306 6.22050 6.32310 6.44102 6.62926 6.79072 7.07600 7.09375 7.72905 7.98910 8.76211 9.37365 10.89327 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.003906 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.779851 B = 7167.336335 C = 7649.748927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.025 4.025 4 H 0.087 0.913 5 S -0.293 6.293 6 C 0.089 3.911 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.905 3.095 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.281 1.281 15 C -0.038 4.038 16 C -0.099 4.099 17 C -0.111 4.111 18 C -0.041 4.041 19 Cl -0.082 7.082 20 C -0.110 4.110 21 C -0.089 4.089 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.347 4.149 -12.880 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.153 4.153 4 H 0.105 0.895 5 S -0.061 6.061 6 C -0.058 4.058 7 C -0.551 4.551 8 H 0.085 0.915 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.732 3.268 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.039 4.039 16 C -0.119 4.119 17 C -0.129 4.129 18 C -0.068 4.068 19 Cl -0.053 7.053 20 C -0.128 4.128 21 C -0.108 4.108 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.593 4.463 -13.551 17.770 hybrid contribution 0.021 -0.345 1.146 1.198 sum -10.572 4.117 -12.405 16.811 Atomic orbital electron populations 1.21809 0.95832 1.01474 1.01563 1.21859 0.95477 0.94369 1.03595 1.22081 0.97833 0.98552 0.96806 0.89455 1.86795 1.02418 1.88318 1.28588 1.21097 1.00995 0.98188 0.85478 1.20717 0.89889 1.45214 0.99271 0.91460 1.24954 0.98576 0.94801 0.95497 1.69954 1.34131 1.44098 1.04902 0.86314 0.84176 0.77851 0.78443 1.19413 1.20732 1.20718 1.19527 0.95557 0.94818 0.94034 1.21007 0.97978 0.95055 0.97875 1.20950 1.00864 1.00511 0.90617 1.20881 1.02154 0.96762 0.86990 1.98351 1.91641 1.80766 1.34568 1.21011 0.97941 0.94689 0.99186 1.21055 0.98639 1.00325 0.90808 0.92828 0.92893 0.92716 0.91003 0.90690 0.94728 0.94433 0.92553 0.85150 0.85159 0.85091 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.63 37.16 0.36 -1.45 16 2 C -0.11 -1.69 5.27 -26.73 -0.14 -1.83 16 3 C -0.02 -0.40 2.47 -27.88 -0.07 -0.46 16 4 H 0.09 1.41 7.88 -51.92 -0.41 1.00 16 5 S -0.29 -6.13 20.66 -107.50 -2.22 -8.36 16 6 C 0.09 2.25 5.50 36.01 0.20 2.45 16 7 C -0.51 -14.23 9.13 -34.44 -0.31 -14.54 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.48 16 9 C 0.07 1.81 5.46 -17.83 -0.10 1.72 16 10 N -0.89 -25.62 13.28 55.43 0.74 -24.88 16 11 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 C -0.04 -0.54 3.87 -104.62 -0.41 -0.94 16 16 C -0.10 -1.24 9.67 -39.59 -0.38 -1.63 16 17 C -0.11 -1.28 9.83 -39.55 -0.39 -1.67 16 18 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 19 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 20 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 21 C -0.09 -1.20 8.72 -39.59 -0.35 -1.54 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.62 7.58 -51.93 -0.39 0.22 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.03 7.22 -51.93 -0.38 0.66 16 26 H 0.07 1.27 6.84 -51.93 -0.36 0.91 16 27 H 0.03 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.04 0.98 7.02 -51.92 -0.36 0.61 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.13 1.44 7.94 -52.49 -0.42 1.02 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.14 1.84 7.55 -52.48 -0.40 1.44 16 LS Contribution 308.04 15.07 4.64 4.64 Total: -1.00 -28.44 308.04 -9.95 -38.40 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.36 Total: -1.24 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.23 Total: -22.34 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.74 Total: -24.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -6.13 SS G_CDS: -2.22 Total: -8.36 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.44 -9.95 -38.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.360 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds