Wall clock time and date at job start Mon Mar 30 2020 01:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47003 * 2 1 4 4 H 1.08998 * 109.47468 * 54.89309 * 3 2 1 5 5 S 1.81398 * 109.47172 * 174.89964 * 3 2 1 6 6 C 1.81402 * 103.00037 * 292.00860 * 5 3 2 7 7 C 1.50701 * 109.47418 * 176.79270 * 6 5 3 8 8 H 1.08001 * 119.99601 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99729 * 180.02562 * 7 6 5 10 10 N 1.31503 * 120.00493 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99561 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47222 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47236 * 119.99897 * 11 9 7 14 14 H 1.48505 * 109.47331 * 239.99956 * 11 9 7 15 15 C 1.50707 * 109.47010 * 294.89611 * 3 2 1 16 16 C 1.38247 * 119.98309 * 120.00323 * 15 3 2 17 17 C 1.38212 * 120.00863 * 179.97438 * 16 15 3 18 18 C 1.38351 * 119.99128 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 120.01523 * 180.02562 * 18 17 16 20 20 C 1.38353 * 119.96984 * 0.27561 * 18 17 16 21 21 C 1.38216 * 119.98622 * 359.40344 * 20 18 17 22 22 H 1.09001 * 109.47436 * 305.96130 * 1 2 3 23 23 H 1.09002 * 109.47023 * 65.95451 * 1 2 3 24 24 H 1.08998 * 109.47023 * 185.95285 * 1 2 3 25 25 H 1.09004 * 109.47302 * 240.00100 * 2 1 3 26 26 H 1.09001 * 109.47321 * 119.99723 * 2 1 3 27 27 H 1.09000 * 109.46932 * 296.79547 * 6 5 3 28 28 H 1.09001 * 109.47107 * 56.79164 * 6 5 3 29 29 H 0.97003 * 120.00445 * 180.02562 * 10 9 7 30 30 H 1.07999 * 119.99363 * 359.97438 * 16 15 3 31 31 H 1.08002 * 120.00518 * 180.02562 * 17 16 15 32 32 H 1.08005 * 120.00780 * 179.72505 * 20 18 17 33 33 H 1.08003 * 119.99227 * 180.32151 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6039 1.9821 0.8407 5 16 3.8475 1.4448 0.1520 6 6 4.1160 0.8318 1.8381 7 6 5.5951 0.7000 2.0952 8 1 6.3028 0.9595 1.3218 9 6 6.0446 0.2482 3.3178 10 7 5.1829 -0.0683 4.2593 11 14 7.8780 0.0855 3.6366 12 1 8.6300 0.5024 2.4259 13 1 8.2606 0.9532 4.7794 14 1 8.2011 -1.3278 3.9584 15 6 1.6434 2.1155 -1.2888 16 6 0.8422 3.2418 -1.2621 17 6 0.4787 3.8597 -2.4437 18 6 0.9163 3.3506 -3.6535 19 17 0.4606 4.1266 -5.1380 20 6 1.7129 2.2198 -3.6798 21 6 2.0813 1.6066 -2.4972 22 1 -0.3634 0.6035 0.8318 23 1 -0.3633 0.4187 -0.9385 24 1 -0.3633 -1.0221 0.1066 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.6840 1.5326 2.5525 28 1 3.6394 -0.1420 1.9509 29 1 5.4992 -0.3858 5.1196 30 1 0.5003 3.6388 -0.3177 31 1 -0.1469 4.7398 -2.4228 32 1 2.0513 1.8193 -4.6241 33 1 2.7075 0.7268 -2.5174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:39 Heat of formation + Delta-G solvation = -22.619220 kcal Electronic energy + Delta-G solvation = -15576.948803 eV Core-core repulsion = 12946.029987 eV Total energy + Delta-G solvation = -2630.918817 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52716 -37.61868 -36.01218 -35.28877 -32.06061 -31.57641 -30.61277 -27.69371 -25.18784 -24.09860 -23.33579 -21.54615 -18.76868 -18.12220 -17.30503 -16.88641 -16.46611 -15.97359 -15.46219 -15.21278 -14.65887 -14.51337 -14.40832 -14.23889 -14.17687 -13.73137 -13.22157 -12.89386 -12.76527 -12.62550 -12.49229 -12.41152 -12.05894 -11.86549 -11.71583 -11.68138 -11.46208 -10.75269 -10.61642 -9.99282 -9.50684 -8.47525 -8.33528 -6.46513 0.00804 0.33582 1.11857 1.15221 1.39075 1.39968 1.54339 2.00955 2.36266 2.69874 3.00948 3.55247 3.71488 3.94568 3.98995 4.13182 4.35456 4.42013 4.45622 4.60038 4.70712 4.80955 4.95625 4.96698 5.01313 5.10167 5.14344 5.24300 5.25281 5.34914 5.56814 5.57883 5.79849 5.89667 6.61069 7.21552 8.78321 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.003906 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.779851 B = 7167.336335 C = 7649.748927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.008 4.008 4 H 0.086 0.914 5 S -0.305 6.305 6 C 0.094 3.906 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.974 3.026 12 H -0.266 1.266 13 H -0.273 1.273 14 H -0.272 1.272 15 C -0.055 4.055 16 C -0.099 4.099 17 C -0.107 4.107 18 C -0.043 4.043 19 Cl -0.069 7.069 20 C -0.110 4.110 21 C -0.097 4.097 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.010 0.990 28 H 0.019 0.981 29 H 0.270 0.730 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.921 4.867 -14.209 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.136 4.136 4 H 0.104 0.896 5 S -0.073 6.073 6 C -0.054 4.054 7 C -0.574 4.574 8 H 0.078 0.922 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.798 3.202 12 H -0.190 1.190 13 H -0.198 1.198 14 H -0.197 1.197 15 C -0.057 4.057 16 C -0.119 4.119 17 C -0.125 4.125 18 C -0.070 4.070 19 Cl -0.040 7.040 20 C -0.128 4.128 21 C -0.117 4.117 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.028 0.972 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.169 5.181 -14.885 19.317 hybrid contribution 0.076 -0.508 1.435 1.524 sum -11.093 4.673 -13.450 18.050 Atomic orbital electron populations 1.21732 0.93232 1.02494 1.02277 1.21804 0.97614 0.93238 1.02378 1.22105 0.93373 0.99815 0.98300 0.89580 1.86582 1.08052 1.87843 1.24833 1.20741 0.99746 0.96725 0.88150 1.21026 0.91017 1.45759 0.99623 0.92184 1.25876 1.03438 0.94065 0.95124 1.70053 1.36325 1.44522 1.05410 0.85259 0.78288 0.78262 0.78427 1.19030 1.19826 1.19721 1.19391 0.97375 0.96019 0.92909 1.21177 0.97413 0.94216 0.99076 1.21203 1.00506 1.00876 0.89958 1.21048 1.01607 0.96571 0.87745 1.98361 1.91451 1.80447 1.33773 1.21172 0.97649 0.94649 0.99342 1.21066 0.98914 1.00490 0.91208 0.92514 0.91772 0.91498 0.90666 0.93454 0.97175 0.96304 0.92096 0.83762 0.82817 0.83398 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.63 71.98 0.69 -2.51 16 2 C -0.11 -3.32 5.27 30.59 0.16 -3.16 16 3 C -0.01 -0.25 2.47 29.85 0.07 -0.18 16 4 H 0.09 2.80 7.88 -2.39 -0.02 2.78 16 5 S -0.31 -13.11 20.66 -56.49 -1.17 -14.28 16 6 C 0.09 4.96 5.50 71.24 0.39 5.36 16 7 C -0.54 -30.68 9.13 25.60 0.23 -30.45 16 8 H 0.06 3.45 7.71 -2.91 -0.02 3.43 16 9 C 0.02 0.89 5.46 84.66 0.46 1.35 16 10 N -0.92 -54.17 13.28 21.44 0.28 -53.89 16 11 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 15 C -0.06 -1.50 3.87 -19.86 -0.08 -1.58 16 16 C -0.10 -2.27 9.67 22.27 0.22 -2.05 16 17 C -0.11 -2.16 9.83 22.29 0.22 -1.94 16 18 C -0.04 -0.90 6.32 22.32 0.14 -0.76 16 19 Cl -0.07 -1.31 28.96 -2.72 -0.08 -1.39 16 20 C -0.11 -2.42 9.83 22.29 0.22 -2.20 16 21 C -0.10 -2.50 8.72 22.26 0.19 -2.31 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.36 7.58 -2.39 -0.02 1.34 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 25 H 0.07 2.17 7.22 -2.39 -0.02 2.16 16 26 H 0.05 1.67 6.84 -2.39 -0.02 1.65 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.02 1.04 7.02 -2.39 -0.02 1.02 16 29 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.14 2.85 7.94 -2.91 -0.02 2.83 16 31 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.13 3.47 7.55 -2.91 -0.02 3.45 16 Total: -1.00 -61.66 308.04 5.08 -56.58 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 1.09 Total: 7.66 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 2.93 Total: -40.43 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.28 Total: -53.89 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -13.11 SS G_CDS: -1.17 Total: -14.28 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -61.66 5.08 -56.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.959 kcal (2) G-P(sol) polarization free energy of solvation -61.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds