Wall clock time and date at job start Mon Mar 30 2020 01:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46675 * 2 1 4 4 H 1.08997 * 109.46998 * 54.39098 * 3 2 1 5 5 S 1.81400 * 109.47525 * 294.38304 * 3 2 1 6 6 C 1.81399 * 103.00205 * 173.33270 * 5 3 2 7 7 C 1.50698 * 109.47152 * 175.12685 * 6 5 3 8 8 H 1.08002 * 119.99989 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99935 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99944 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99948 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47148 * 90.00146 * 11 9 7 13 13 H 1.48500 * 109.46912 * 210.00190 * 11 9 7 14 14 H 1.48498 * 109.47424 * 330.00190 * 11 9 7 15 15 C 1.50700 * 109.46830 * 174.38439 * 3 2 1 16 16 C 1.38249 * 119.98446 * 59.73228 * 15 3 2 17 17 C 1.38223 * 120.00735 * 179.72596 * 16 15 3 18 18 C 1.38344 * 119.98877 * 0.54513 * 17 16 15 19 19 Cl 1.73600 * 120.01396 * 179.75021 * 18 17 16 20 20 C 1.38356 * 119.97634 * 359.72605 * 18 17 16 21 21 C 1.38215 * 119.98279 * 359.97438 * 20 18 17 22 22 H 1.08998 * 109.46841 * 295.32045 * 1 2 3 23 23 H 1.08998 * 109.47470 * 55.32117 * 1 2 3 24 24 H 1.08999 * 109.46935 * 175.32611 * 1 2 3 25 25 H 1.09001 * 109.46800 * 240.00683 * 2 1 3 26 26 H 1.08989 * 109.47583 * 120.00293 * 2 1 3 27 27 H 1.08991 * 109.47140 * 55.11849 * 6 5 3 28 28 H 1.09000 * 109.46949 * 295.12223 * 6 5 3 29 29 H 0.97002 * 119.99766 * 179.97438 * 10 9 7 30 30 H 1.07995 * 119.99400 * 359.97438 * 16 15 3 31 31 H 1.08004 * 120.00088 * 180.26996 * 17 16 15 32 32 H 1.07997 * 120.00949 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.99051 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 0.8355 5 16 1.5758 2.2481 -1.5577 6 6 2.0745 3.9715 -1.2903 7 6 1.8602 4.7588 -2.5573 8 1 1.4640 4.2710 -3.4357 9 6 2.1709 6.1016 -2.5954 10 7 1.9843 6.7885 -3.7013 11 14 2.8569 6.9450 -1.0764 12 1 4.3392 6.8559 -1.0875 13 1 2.4468 8.3723 -1.0750 14 1 2.3300 6.2775 0.1410 15 6 3.5405 1.4449 0.1390 16 6 4.3230 0.8089 -0.8068 17 6 5.6996 0.8156 -0.6828 18 6 6.2938 1.4491 0.3940 19 17 8.0224 1.4523 0.5539 20 6 5.5099 2.0805 1.3433 21 6 4.1338 2.0785 1.2149 22 1 -0.3633 0.4395 0.9289 23 1 -0.3634 0.5847 -0.8451 24 1 -0.3633 -1.0243 -0.0837 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 3.1285 4.0062 -1.0148 28 1 1.4751 4.4030 -0.4887 29 1 2.2026 7.7333 -3.7280 30 1 3.8587 0.3104 -1.6448 31 1 6.3110 0.3225 -1.4241 32 1 5.9732 2.5749 2.1843 33 1 3.5218 2.5717 1.9556 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:41 Heat of formation + Delta-G solvation = -5.040877 kcal Electronic energy + Delta-G solvation = -15917.530024 eV Core-core repulsion = 13287.373462 eV Total energy + Delta-G solvation = -2630.156563 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41868 -36.59998 -34.87928 -33.05371 -31.07222 -30.85546 -29.29583 -26.31864 -23.08067 -22.56877 -22.00762 -20.72013 -17.18688 -16.92158 -16.12600 -15.53303 -15.08997 -14.56733 -14.07271 -13.99475 -13.58005 -13.44790 -12.98111 -12.87382 -12.57656 -12.30216 -12.21906 -11.57808 -11.49241 -11.27650 -10.98280 -10.96388 -10.81889 -10.76877 -10.32546 -10.01075 -9.66674 -9.05571 -8.97253 -8.72328 -8.39961 -6.83479 -6.19374 -4.21216 1.13795 1.36810 2.14571 2.45101 3.20364 3.27396 3.28354 3.53665 3.83563 4.29956 4.61958 4.80585 4.91607 5.04381 5.12440 5.20587 5.39074 5.40787 5.52187 5.68622 5.73388 5.86752 6.00438 6.02054 6.18877 6.25164 6.30110 6.45787 6.59246 6.62822 6.69354 6.84675 7.42004 8.28638 8.82985 9.36910 10.92747 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.007285 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.458707 B = 3842.540417 C = 5383.276470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.094 4.094 3 C -0.034 4.034 4 H 0.087 0.913 5 S -0.246 6.246 6 C 0.046 3.954 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.081 3.919 10 N -0.891 5.891 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.266 1.266 15 C -0.065 4.065 16 C -0.081 4.081 17 C -0.109 4.109 18 C -0.039 4.039 19 Cl -0.081 7.081 20 C -0.111 4.111 21 C -0.105 4.105 22 H 0.051 0.949 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.268 0.732 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -13.200 11.128 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.132 4.132 3 C -0.162 4.162 4 H 0.106 0.894 5 S -0.015 6.015 6 C -0.102 4.102 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.124 4.124 10 N -0.529 5.529 11 Si 0.701 3.299 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.067 4.067 16 C -0.100 4.100 17 C -0.128 4.128 18 C -0.066 4.066 19 Cl -0.052 7.052 20 C -0.130 4.130 21 C -0.125 4.125 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.976 -13.460 10.133 17.567 hybrid contribution 1.197 1.357 1.793 2.548 sum 6.173 -12.103 11.926 18.078 Atomic orbital electron populations 1.21857 0.94882 1.01579 1.03000 1.21311 0.96657 0.92928 1.02345 1.22237 0.92763 1.00135 1.01110 0.89419 1.86691 1.81969 1.11984 1.20875 1.21414 0.98238 0.89115 1.01391 1.20469 1.44792 0.93679 0.96252 0.89882 1.24838 0.94759 0.96732 0.96026 1.69863 1.47706 1.08767 1.26530 0.86854 0.79990 0.79214 0.83820 1.19846 1.20785 1.19071 1.20060 0.95290 0.96833 0.94527 1.20994 0.92276 0.98279 0.98439 1.21016 0.95037 0.99857 0.96864 1.20882 0.84038 1.03351 0.98314 1.98350 1.11586 1.97610 1.97697 1.20944 0.93406 0.99731 0.98883 1.21005 0.93963 0.99492 0.98055 0.92941 0.90710 0.92887 0.91071 0.91419 0.95192 0.94917 0.92242 0.84472 0.84986 0.85207 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.82 37.16 0.36 -1.47 16 2 C -0.09 -1.15 5.12 -26.73 -0.14 -1.29 16 3 C -0.03 -0.51 2.44 -27.88 -0.07 -0.58 16 4 H 0.09 1.29 7.88 -51.93 -0.41 0.88 16 5 S -0.25 -4.90 19.45 -107.50 -2.09 -6.99 16 6 C 0.05 1.11 4.61 36.00 0.17 1.27 16 7 C -0.51 -14.60 9.68 -34.44 -0.33 -14.93 16 8 H 0.08 2.59 7.96 -52.49 -0.42 2.17 16 9 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 10 N -0.89 -27.02 13.96 55.43 0.77 -26.24 16 11 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 15 C -0.06 -0.96 4.41 -104.62 -0.46 -1.42 16 16 C -0.08 -1.15 8.84 -39.58 -0.35 -1.50 16 17 C -0.11 -1.47 9.83 -39.55 -0.39 -1.86 16 18 C -0.04 -0.53 6.32 -39.50 -0.25 -0.78 16 19 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 20 C -0.11 -1.48 9.83 -39.55 -0.39 -1.87 16 21 C -0.10 -1.46 9.67 -39.59 -0.38 -1.85 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.03 7.02 -51.93 -0.36 0.66 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.87 7.58 -51.93 -0.39 0.48 16 26 H 0.07 0.73 8.14 -51.94 -0.42 0.30 16 27 H 0.03 0.72 7.36 -51.93 -0.38 0.34 16 28 H 0.03 0.78 7.20 -51.92 -0.37 0.40 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.14 1.86 7.63 -52.49 -0.40 1.46 16 31 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.57 7.95 -52.48 -0.42 1.16 16 LS Contribution 306.03 15.07 4.61 4.61 Total: -1.00 -29.78 306.03 -9.64 -39.42 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.44 Total: -0.80 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -2.33 Total: -24.05 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Atomic # 16 Polarization: -4.90 SS G_CDS: -2.09 Total: -6.99 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.78 -9.64 -39.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.380 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds