Wall clock time and date at job start Mon Mar 30 2020 01:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46675 * 2 1 4 4 H 1.08997 * 109.46998 * 54.39098 * 3 2 1 5 5 S 1.81400 * 109.47525 * 294.38304 * 3 2 1 6 6 C 1.81399 * 103.00205 * 173.33270 * 5 3 2 7 7 C 1.50698 * 109.47152 * 175.12685 * 6 5 3 8 8 H 1.08002 * 119.99989 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99935 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99944 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99948 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47148 * 90.00146 * 11 9 7 13 13 H 1.48500 * 109.46912 * 210.00190 * 11 9 7 14 14 H 1.48498 * 109.47424 * 330.00190 * 11 9 7 15 15 C 1.50700 * 109.46830 * 174.38439 * 3 2 1 16 16 C 1.38249 * 119.98446 * 59.73228 * 15 3 2 17 17 C 1.38223 * 120.00735 * 179.72596 * 16 15 3 18 18 C 1.38344 * 119.98877 * 0.54513 * 17 16 15 19 19 Cl 1.73600 * 120.01396 * 179.75021 * 18 17 16 20 20 C 1.38356 * 119.97634 * 359.72605 * 18 17 16 21 21 C 1.38215 * 119.98279 * 359.97438 * 20 18 17 22 22 H 1.08998 * 109.46841 * 295.32045 * 1 2 3 23 23 H 1.08998 * 109.47470 * 55.32117 * 1 2 3 24 24 H 1.08999 * 109.46935 * 175.32611 * 1 2 3 25 25 H 1.09001 * 109.46800 * 240.00683 * 2 1 3 26 26 H 1.08989 * 109.47583 * 120.00293 * 2 1 3 27 27 H 1.08991 * 109.47140 * 55.11849 * 6 5 3 28 28 H 1.09000 * 109.46949 * 295.12223 * 6 5 3 29 29 H 0.97002 * 119.99766 * 179.97438 * 10 9 7 30 30 H 1.07995 * 119.99400 * 359.97438 * 16 15 3 31 31 H 1.08004 * 120.00088 * 180.26996 * 17 16 15 32 32 H 1.07997 * 120.00949 * 179.97438 * 20 18 17 33 33 H 1.08003 * 119.99051 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5968 1.9845 0.8355 5 16 1.5758 2.2481 -1.5577 6 6 2.0745 3.9715 -1.2903 7 6 1.8602 4.7588 -2.5573 8 1 1.4640 4.2710 -3.4357 9 6 2.1709 6.1016 -2.5954 10 7 1.9843 6.7885 -3.7013 11 14 2.8569 6.9450 -1.0764 12 1 4.3392 6.8559 -1.0875 13 1 2.4468 8.3723 -1.0750 14 1 2.3300 6.2775 0.1410 15 6 3.5405 1.4449 0.1390 16 6 4.3230 0.8089 -0.8068 17 6 5.6996 0.8156 -0.6828 18 6 6.2938 1.4491 0.3940 19 17 8.0224 1.4523 0.5539 20 6 5.5099 2.0805 1.3433 21 6 4.1338 2.0785 1.2149 22 1 -0.3633 0.4395 0.9289 23 1 -0.3634 0.5847 -0.8451 24 1 -0.3633 -1.0243 -0.0837 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 3.1285 4.0062 -1.0148 28 1 1.4751 4.4030 -0.4887 29 1 2.2026 7.7333 -3.7280 30 1 3.8587 0.3104 -1.6448 31 1 6.3110 0.3225 -1.4241 32 1 5.9732 2.5749 2.1843 33 1 3.5218 2.5717 1.9556 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013425.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:41 Heat of formation + Delta-G solvation = -19.564910 kcal Electronic energy + Delta-G solvation = -15918.159834 eV Core-core repulsion = 13287.373462 eV Total energy + Delta-G solvation = -2630.786372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46535 -37.60604 -35.92183 -35.20931 -32.13867 -31.92395 -31.29245 -27.40191 -24.74323 -23.94953 -23.06591 -21.85757 -19.08669 -18.20036 -17.42810 -16.73235 -16.53634 -15.96169 -15.60506 -15.13110 -14.81336 -14.58841 -14.54120 -14.41578 -14.06401 -13.74499 -13.27695 -12.87496 -12.64368 -12.51785 -12.36635 -12.20183 -12.08654 -11.91355 -11.81530 -11.73024 -11.53450 -10.91107 -10.61416 -10.01108 -9.52360 -8.42345 -8.39016 -6.47474 0.04348 0.33229 1.01073 1.13240 1.30531 1.31499 1.41807 1.97282 2.26471 2.70761 2.94337 3.52940 3.75283 3.93044 4.01407 4.16361 4.38355 4.40589 4.53366 4.63300 4.65747 4.71215 4.76660 4.91891 4.99677 5.10979 5.20201 5.22606 5.26697 5.33906 5.50039 5.55678 5.80668 6.05889 6.56460 7.14944 8.76891 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.007285 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.458707 B = 3842.540417 C = 5383.276470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.016 4.016 4 H 0.096 0.904 5 S -0.272 6.272 6 C 0.050 3.950 7 C -0.525 4.525 8 H 0.037 0.963 9 C 0.021 3.979 10 N -0.939 5.939 11 Si 0.945 3.055 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.244 1.244 15 C -0.082 4.082 16 C -0.090 4.090 17 C -0.115 4.115 18 C -0.047 4.047 19 Cl -0.072 7.072 20 C -0.114 4.114 21 C -0.110 4.110 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.037 0.963 29 H 0.272 0.728 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 -13.942 13.864 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.128 4.128 3 C -0.144 4.144 4 H 0.114 0.886 5 S -0.041 6.041 6 C -0.098 4.098 7 C -0.564 4.564 8 H 0.055 0.945 9 C -0.179 4.179 10 N -0.578 5.578 11 Si 0.767 3.233 12 H -0.191 1.191 13 H -0.201 1.201 14 H -0.167 1.167 15 C -0.084 4.084 16 C -0.110 4.110 17 C -0.133 4.133 18 C -0.074 4.074 19 Cl -0.043 7.043 20 C -0.132 4.132 21 C -0.130 4.130 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.909 -14.218 12.866 20.066 hybrid contribution 0.924 1.460 0.898 1.948 sum 6.833 -12.758 13.765 19.973 Atomic orbital electron populations 1.21838 0.94533 1.02475 1.02332 1.21347 0.96888 0.91108 1.03480 1.22316 0.93409 1.01014 0.97651 0.88604 1.86693 1.82218 1.09739 1.25464 1.21123 0.98242 0.91499 0.98891 1.20689 1.44416 0.94501 0.96786 0.94475 1.25837 0.94954 0.97502 0.99577 1.70016 1.49234 1.09378 1.29206 0.85735 0.79374 0.78120 0.80031 1.19082 1.20095 1.16726 1.20114 0.94943 0.97925 0.95448 1.21093 0.92785 0.98574 0.98530 1.21217 0.94954 0.99849 0.97302 1.21066 0.84717 1.03202 0.98394 1.98354 1.10742 1.97557 1.97656 1.21214 0.93289 0.99394 0.99323 1.21243 0.94506 0.99115 0.98133 0.92078 0.93186 0.90939 0.91207 0.88819 0.95094 0.94511 0.91922 0.84499 0.83565 0.83222 0.83726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.82 71.98 0.71 -2.61 16 2 C -0.09 -1.99 5.12 30.60 0.16 -1.83 16 3 C -0.02 -0.44 2.44 29.85 0.07 -0.37 16 4 H 0.10 2.56 7.88 -2.39 -0.02 2.54 16 5 S -0.27 -10.81 19.45 -56.49 -1.10 -11.91 16 6 C 0.05 2.40 4.61 71.24 0.33 2.73 16 7 C -0.53 -30.73 9.68 25.60 0.25 -30.48 16 8 H 0.04 2.44 7.96 -2.91 -0.02 2.42 16 9 C 0.02 1.24 5.47 84.65 0.46 1.70 16 10 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 11 Si 0.95 43.34 27.47 68.60 1.88 45.22 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 15 C -0.08 -2.26 4.41 -19.86 -0.09 -2.35 16 16 C -0.09 -2.46 8.84 22.27 0.20 -2.26 16 17 C -0.11 -2.89 9.83 22.29 0.22 -2.67 16 18 C -0.05 -1.16 6.32 22.32 0.14 -1.02 16 19 Cl -0.07 -1.62 28.96 -2.72 -0.08 -1.70 16 20 C -0.11 -2.70 9.83 22.29 0.22 -2.48 16 21 C -0.11 -2.75 9.67 22.26 0.22 -2.53 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.33 7.02 -2.39 -0.02 1.31 16 24 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.03 1.45 7.36 -2.39 -0.02 1.43 16 28 H 0.04 1.70 7.20 -2.39 -0.02 1.68 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.14 3.62 7.63 -2.91 -0.02 3.59 16 31 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.15 3.05 7.95 -2.91 -0.02 3.03 16 Total: -1.00 -65.43 306.03 4.92 -60.52 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.03 Total: 10.25 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 2.88 Total: -44.17 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.30 Total: -58.20 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Atomic # 16 Polarization: -10.81 SS G_CDS: -1.10 Total: -11.91 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -0.08 Total: -1.70 kcal Total: -65.43 4.92 -60.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013425.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.950 kcal (2) G-P(sol) polarization free energy of solvation -65.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds