Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34895 * 116.99720 * 2 1 4 4 O 1.21620 * 120.00300 * 359.97438 * 3 2 1 5 5 C 1.46475 * 119.99853 * 180.02562 * 3 2 1 6 6 C 1.36634 * 125.99845 * 180.02562 * 5 3 2 7 7 C 1.40306 * 106.70207 * 179.80101 * 6 5 3 8 8 C 1.35163 * 107.12922 * 0.35295 * 7 6 5 9 9 C 1.50697 * 125.61258 * 179.90537 * 8 7 6 10 10 H 1.08998 * 109.46862 * 359.72180 * 9 8 7 11 11 C 1.52997 * 109.47466 * 239.71625 * 9 8 7 12 12 S 1.81399 * 109.47031 * 119.71439 * 9 8 7 13 13 C 1.81403 * 102.99945 * 185.00511 * 12 9 8 14 14 C 1.50704 * 109.47136 * 180.02562 * 13 12 9 15 15 H 1.08004 * 120.00053 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99795 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00425 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99870 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47232 * 89.99910 * 18 16 14 20 20 H 1.48494 * 109.47305 * 210.00564 * 18 16 14 21 21 H 1.48502 * 109.47108 * 330.00405 * 18 16 14 22 22 O 1.33918 * 108.77903 * 359.64097 * 8 7 6 23 23 H 1.09004 * 109.46683 * 299.99681 * 1 2 3 24 24 H 1.08996 * 109.47226 * 60.00033 * 1 2 3 25 25 H 1.09001 * 109.47062 * 180.02562 * 1 2 3 26 26 H 1.08008 * 126.64962 * 0.03679 * 6 5 3 27 27 H 1.08001 * 126.43454 * 180.21940 * 7 6 5 28 28 H 1.09002 * 109.47153 * 59.99773 * 11 9 8 29 29 H 1.09001 * 109.46832 * 299.99964 * 11 9 8 30 30 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 31 31 H 1.09005 * 109.46847 * 299.99667 * 13 12 9 32 32 H 1.08991 * 109.47517 * 59.99967 * 13 12 9 33 33 H 0.97000 * 120.00586 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5271 1.2786 -0.0006 6 6 4.2712 2.4246 -0.0001 7 6 5.6179 2.0309 0.0037 8 6 5.6376 0.6794 -0.0025 9 6 6.8754 -0.1801 -0.0033 10 1 7.7600 0.4568 -0.0031 11 6 6.8827 -1.0627 -1.2530 12 16 6.8847 -1.2282 1.4772 13 6 8.4938 -2.0599 1.3783 14 6 8.6556 -2.9828 2.5586 15 1 7.8693 -3.0609 3.2949 16 6 9.8075 -3.7275 2.6986 17 7 10.7652 -3.6321 1.8024 18 14 10.0084 -4.8710 4.1620 19 1 9.4780 -6.2145 3.8170 20 1 11.4478 -4.9814 4.5100 21 1 9.2590 -4.3261 5.3225 22 8 4.3762 0.2299 -0.0020 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.8956 3.4372 0.0012 27 1 6.4774 2.6850 0.0084 28 1 6.8771 -0.4329 -2.1427 29 1 5.9981 -1.6996 -1.2532 30 1 7.7783 -1.6841 -1.2538 31 1 8.5480 -2.6378 0.4556 32 1 9.2892 -1.3148 1.3876 33 1 11.5758 -4.1557 1.9010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = -79.230454 kcal Electronic energy + Delta-G solvation = -17614.975642 eV Core-core repulsion = 14540.892814 eV Total energy + Delta-G solvation = -3074.082829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.79161 -40.31043 -36.70064 -34.16012 -33.20872 -33.03940 -29.80759 -28.56640 -27.65473 -24.58992 -23.19659 -22.37856 -21.61958 -20.39024 -18.54850 -17.25662 -16.95956 -16.73800 -16.02270 -15.70935 -14.99640 -14.74030 -14.18953 -13.86449 -13.47376 -13.25573 -13.17855 -13.02946 -12.72233 -12.40871 -12.38084 -12.12098 -11.56200 -11.43902 -11.04247 -11.03729 -10.89431 -10.72394 -10.14729 -9.99887 -9.66414 -8.97481 -8.66066 -8.56130 -6.83276 -6.24546 -4.28950 0.70888 1.93153 2.18081 2.66095 2.79678 2.88954 3.24023 3.29893 3.35085 3.68887 4.31848 4.41754 4.74573 4.77960 4.88158 4.96464 5.11707 5.13047 5.28458 5.29862 5.45681 5.63808 5.69524 5.83670 5.98230 6.02744 6.21425 6.33509 6.82452 7.01068 7.03365 7.48285 7.70095 7.94508 8.72762 9.34597 10.86612 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.003819 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.544858 B = 7330.408233 C = 7857.096834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.345 6.345 3 C 0.558 3.442 4 O -0.495 6.495 5 C -0.081 4.081 6 C -0.096 4.096 7 C -0.222 4.222 8 C 0.083 3.917 9 C 0.000 4.000 10 H 0.115 0.885 11 C -0.146 4.146 12 S -0.278 6.278 13 C 0.089 3.911 14 C -0.514 4.514 15 H 0.068 0.932 16 C 0.067 3.933 17 N -0.892 5.892 18 Si 0.907 3.093 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 O -0.134 6.134 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.164 0.836 27 H 0.162 0.838 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.251 9.180 -6.544 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.261 6.261 3 C 0.403 3.597 4 O -0.385 6.385 5 C -0.132 4.132 6 C -0.115 4.115 7 C -0.243 4.243 8 C 0.028 3.972 9 C -0.128 4.128 10 H 0.133 0.867 11 C -0.205 4.205 12 S -0.049 6.049 13 C -0.057 4.057 14 C -0.553 4.553 15 H 0.086 0.914 16 C -0.137 4.137 17 N -0.530 5.530 18 Si 0.734 3.266 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.195 1.195 22 O -0.029 6.029 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.124 0.876 26 H 0.181 0.819 27 H 0.180 0.820 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.189 8.960 -5.810 17.758 hybrid contribution 1.048 -0.269 -0.149 1.092 sum -13.141 8.691 -5.959 16.844 Atomic orbital electron populations 1.23353 0.75513 1.04157 1.02684 1.86712 1.23837 1.31708 1.83872 1.19175 0.85537 0.82048 0.72908 1.90924 1.64492 1.35927 1.47152 1.20575 0.87863 0.86410 1.18338 1.21915 0.92266 0.98598 0.98756 1.21566 0.97753 0.93904 1.11107 1.22308 0.83307 0.93268 0.98306 1.21683 0.92645 0.98444 0.99983 0.86744 1.22097 1.04436 0.99331 0.94633 1.87091 1.34254 1.53936 1.29600 1.21156 0.86333 0.96920 1.01331 1.20649 1.03124 1.23822 1.07716 0.91433 1.24943 0.95154 0.96744 0.96872 1.69939 1.07189 1.41006 1.34901 0.86343 0.77388 0.80727 0.82176 1.20294 1.20943 1.19519 1.84149 1.15046 1.34167 1.69539 0.91580 0.91654 0.87649 0.81855 0.82015 0.92182 0.90991 0.90460 0.94127 0.94423 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.57 10.58 -42.47 -0.45 -5.02 16 3 C 0.56 7.97 7.93 34.05 0.27 8.24 16 4 O -0.49 -7.42 16.66 -19.36 -0.32 -7.75 16 5 C -0.08 -1.20 7.18 -36.85 -0.26 -1.46 16 6 C -0.10 -1.22 10.62 -39.38 -0.42 -1.64 16 7 C -0.22 -2.88 10.74 -39.90 -0.43 -3.30 16 8 C 0.08 1.28 5.83 -35.40 -0.21 1.07 16 9 C 0.00 0.01 3.25 -27.89 -0.09 -0.08 16 10 H 0.11 1.69 8.10 -51.93 -0.42 1.27 16 11 C -0.15 -2.18 9.08 37.16 0.34 -1.84 16 12 S -0.28 -5.91 21.05 -107.50 -2.26 -8.17 16 13 C 0.09 2.22 5.39 36.01 0.19 2.41 16 14 C -0.51 -14.15 9.13 -34.44 -0.31 -14.47 16 15 H 0.07 1.88 7.71 -52.48 -0.40 1.47 16 16 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 17 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 18 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 O -0.13 -2.22 10.67 4.73 0.05 -2.17 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 27 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.22 6.92 -51.93 -0.36 0.86 16 31 H 0.04 1.03 7.14 -51.92 -0.37 0.66 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -30.62 311.43 -6.60 -37.21 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.07 Total: -2.33 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 0.05 Total: -7.96 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.74 Total: -24.52 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.72 Total: -14.94 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -2.26 Total: -8.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.62 -6.60 -37.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.016 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds