Wall clock time and date at job start Mon Mar 30 2020 00:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38263 * 119.99073 * 2 1 4 4 C 1.38224 * 120.02464 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.01313 * 0.23958 * 4 3 2 6 6 C 1.38328 * 119.98312 * 359.46435 * 5 4 3 7 7 Cl 1.73603 * 120.01182 * 180.28262 * 6 5 4 8 8 C 1.38190 * 119.99252 * 179.97438 * 2 1 3 9 9 C 1.50695 * 120.00881 * 359.97438 * 8 2 1 10 10 S 1.81397 * 109.47094 * 90.00186 * 9 8 2 11 11 C 1.81403 * 103.00173 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47023 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46781 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00228 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99682 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00129 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99853 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46882 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47377 * 119.99531 * 17 15 13 20 20 H 1.48501 * 109.47113 * 239.99665 * 17 15 13 21 21 H 1.08996 * 109.46574 * 89.99966 * 1 2 3 22 22 H 1.08997 * 109.46993 * 209.99756 * 1 2 3 23 23 H 1.08993 * 109.47306 * 330.00150 * 1 2 3 24 24 H 1.07996 * 119.98722 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.99032 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.00970 * 179.74649 * 5 4 3 27 27 H 1.08997 * 109.47571 * 210.00166 * 9 8 2 28 28 H 1.09004 * 109.47412 * 330.00083 * 9 8 2 29 29 H 1.09001 * 109.46852 * 300.00155 * 11 10 9 30 30 H 1.08997 * 109.47160 * 59.99859 * 11 10 9 31 31 H 1.08996 * 109.46823 * 299.99462 * 12 11 10 32 32 H 1.08997 * 109.47473 * 59.99799 * 12 11 10 33 33 H 0.96998 * 119.99966 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 -0.0005 5 6 4.2726 0.0017 -0.0061 6 6 3.5816 -1.1966 0.0001 7 17 4.4502 -2.6997 0.0006 8 6 2.1979 -1.1969 0.0005 9 6 1.4444 -2.5019 0.0017 10 16 1.1415 -3.0267 -1.7081 11 6 0.2397 -4.5872 -1.5023 12 6 -0.0949 -5.1681 -2.8776 13 6 -0.8447 -6.4641 -2.7066 14 1 -1.0605 -6.8365 -1.7161 15 6 -1.2542 -7.1750 -3.8148 16 7 -0.9909 -6.7218 -5.0209 17 14 -2.1841 -8.7812 -3.6028 18 1 -2.3523 -9.0685 -2.1556 19 1 -3.5189 -8.6687 -4.2439 20 1 -1.4200 -9.8834 -4.2404 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6578 2.1326 -0.0004 25 1 4.1197 2.1341 -0.0010 26 1 5.3526 0.0025 -0.0106 27 1 2.0336 -3.2612 0.5158 28 1 0.4921 -2.3713 0.5158 29 1 0.8587 -5.2945 -0.9504 30 1 -0.6824 -4.4040 -0.9507 31 1 -0.7138 -4.4609 -3.4298 32 1 0.8273 -5.3514 -3.4288 33 1 -1.2793 -7.2218 -5.8005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419510371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:52 Heat of formation + Delta-G solvation = -6.870033 kcal Electronic energy + Delta-G solvation = -15388.176654 eV Core-core repulsion = 12757.940774 eV Total energy + Delta-G solvation = -2630.235881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73950 -36.48167 -33.67487 -33.59797 -31.93950 -30.84415 -27.78404 -26.63617 -25.17576 -22.27869 -21.44000 -20.70336 -16.78290 -16.49430 -16.24847 -15.67436 -15.32288 -14.50365 -14.27940 -13.82307 -13.67910 -13.30063 -13.06501 -12.93189 -12.68401 -12.43013 -11.97828 -11.52038 -11.43058 -11.32324 -11.27795 -11.02746 -10.76827 -10.57082 -10.18171 -9.67858 -9.62576 -9.02883 -8.73276 -8.63729 -8.41502 -7.08412 -6.05098 -4.09563 0.92450 1.08080 2.13438 2.33951 3.24580 3.28726 3.36481 3.40238 3.56613 4.42551 4.51626 4.58058 4.76524 4.91009 5.10860 5.25455 5.30536 5.39256 5.50487 5.61788 5.64429 5.78892 6.01613 6.06214 6.08789 6.19446 6.20640 6.39207 6.67416 6.75042 7.58316 7.67090 7.91529 8.28731 8.95707 9.54328 11.05732 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.003959 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.552152 B = 7071.322759 C = 7581.196449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.119 4.119 4 C -0.106 4.106 5 C -0.120 4.120 6 C -0.018 4.018 7 Cl -0.059 7.059 8 C -0.056 4.056 9 C -0.063 4.063 10 S -0.264 6.264 11 C -0.062 4.062 12 C 0.038 3.962 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 15.799 12.400 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.046 4.046 7 Cl -0.030 7.030 8 C -0.058 4.058 9 C -0.210 4.210 10 S -0.034 6.034 11 C -0.210 4.210 12 C -0.001 4.001 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 H 0.102 0.898 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.146 0.854 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.045 0.955 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.215 16.095 11.278 21.301 hybrid contribution -0.675 -1.653 1.095 2.094 sum 7.540 14.442 12.372 20.457 Atomic orbital electron populations 1.20899 0.90272 1.02742 1.03597 1.19739 0.96641 0.91611 0.97869 1.21086 0.94218 0.97560 1.00858 1.21063 0.94240 0.97488 0.99747 1.20987 1.00344 0.90679 1.01826 1.20808 0.91714 0.87784 1.04312 1.98382 1.75922 1.32051 1.96647 1.19037 0.91336 0.94319 1.01084 1.22348 1.02717 0.96610 0.99357 1.87123 1.76051 1.32024 1.08215 1.23712 0.99362 0.92265 1.05628 1.18898 0.97497 0.95412 0.88268 1.21140 1.36271 1.05813 0.92789 0.92418 1.25010 0.96059 0.97997 0.95181 1.69983 1.46386 1.38936 0.97608 0.86478 0.79569 0.83365 0.78249 1.19695 1.20888 1.20895 0.89815 0.90985 0.91464 0.85404 0.85219 0.85023 0.89173 0.89059 0.91417 0.91438 0.95556 0.95522 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.61 36.01 0.35 -0.88 16 2 C -0.06 -0.67 5.88 -104.63 -0.62 -1.28 16 3 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.11 -1.00 10.05 -39.59 -0.40 -1.40 16 5 C -0.12 -1.30 9.83 -39.55 -0.39 -1.69 16 6 C -0.02 -0.23 6.31 -39.50 -0.25 -0.48 16 7 Cl -0.06 -0.80 27.30 -51.86 -1.42 -2.22 16 8 C -0.06 -0.76 5.14 -104.59 -0.54 -1.30 16 9 C -0.06 -0.93 5.26 36.00 0.19 -0.74 16 10 S -0.26 -4.98 21.72 -107.50 -2.33 -7.31 16 11 C -0.06 -1.31 5.88 37.16 0.22 -1.09 16 12 C 0.04 1.00 4.98 -27.88 -0.14 0.86 16 13 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16 23 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 24 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 25 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 26 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 27 H 0.09 1.32 6.90 -51.93 -0.36 0.96 16 28 H 0.09 1.21 5.95 -51.92 -0.31 0.90 16 29 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -30.54 308.19 -10.08 -40.62 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.32 Total: -3.19 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.37 Total: -22.95 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -2.33 Total: -7.31 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.22 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.54 -10.08 -40.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419510371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.752 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds