Wall clock time and date at job start Mon Mar 30 2020 00:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38263 * 119.99073 * 2 1 4 4 C 1.38224 * 120.02464 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.01313 * 0.23958 * 4 3 2 6 6 C 1.38328 * 119.98312 * 359.46435 * 5 4 3 7 7 Cl 1.73603 * 120.01182 * 180.28262 * 6 5 4 8 8 C 1.38190 * 119.99252 * 179.97438 * 2 1 3 9 9 C 1.50695 * 120.00881 * 359.97438 * 8 2 1 10 10 S 1.81397 * 109.47094 * 90.00186 * 9 8 2 11 11 C 1.81403 * 103.00173 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47023 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46781 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00228 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99682 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00129 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99853 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46882 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47377 * 119.99531 * 17 15 13 20 20 H 1.48501 * 109.47113 * 239.99665 * 17 15 13 21 21 H 1.08996 * 109.46574 * 89.99966 * 1 2 3 22 22 H 1.08997 * 109.46993 * 209.99756 * 1 2 3 23 23 H 1.08993 * 109.47306 * 330.00150 * 1 2 3 24 24 H 1.07996 * 119.98722 * 359.97438 * 3 2 1 25 25 H 1.08002 * 119.99032 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.00970 * 179.74649 * 5 4 3 27 27 H 1.08997 * 109.47571 * 210.00166 * 9 8 2 28 28 H 1.09004 * 109.47412 * 330.00083 * 9 8 2 29 29 H 1.09001 * 109.46852 * 300.00155 * 11 10 9 30 30 H 1.08997 * 109.47160 * 59.99859 * 11 10 9 31 31 H 1.08996 * 109.46823 * 299.99462 * 12 11 10 32 32 H 1.08997 * 109.47473 * 59.99799 * 12 11 10 33 33 H 0.96998 * 119.99966 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 -0.0005 5 6 4.2726 0.0017 -0.0061 6 6 3.5816 -1.1966 0.0001 7 17 4.4502 -2.6997 0.0006 8 6 2.1979 -1.1969 0.0005 9 6 1.4444 -2.5019 0.0017 10 16 1.1415 -3.0267 -1.7081 11 6 0.2397 -4.5872 -1.5023 12 6 -0.0949 -5.1681 -2.8776 13 6 -0.8447 -6.4641 -2.7066 14 1 -1.0605 -6.8365 -1.7161 15 6 -1.2542 -7.1750 -3.8148 16 7 -0.9909 -6.7218 -5.0209 17 14 -2.1841 -8.7812 -3.6028 18 1 -2.3523 -9.0685 -2.1556 19 1 -3.5189 -8.6687 -4.2439 20 1 -1.4200 -9.8834 -4.2404 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8899 0.5138 24 1 1.6578 2.1326 -0.0004 25 1 4.1197 2.1341 -0.0010 26 1 5.3526 0.0025 -0.0106 27 1 2.0336 -3.2612 0.5158 28 1 0.4921 -2.3713 0.5158 29 1 0.8587 -5.2945 -0.9504 30 1 -0.6824 -4.4040 -0.9507 31 1 -0.7138 -4.4609 -3.4298 32 1 0.8273 -5.3514 -3.4288 33 1 -1.2793 -7.2218 -5.8005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419510371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:51 Heat of formation + Delta-G solvation = -21.707751 kcal Electronic energy + Delta-G solvation = -15388.820066 eV Core-core repulsion = 12757.940774 eV Total energy + Delta-G solvation = -2630.879292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60408 -37.46317 -35.78312 -34.49006 -32.91144 -32.83541 -28.73041 -27.65743 -27.13080 -23.41968 -22.93172 -21.84370 -18.68186 -17.68316 -17.18689 -17.00669 -16.51974 -16.23177 -15.59083 -15.49983 -14.65080 -14.48973 -14.21702 -14.05531 -13.78205 -13.64533 -13.45243 -13.25392 -12.94933 -12.45405 -12.28670 -12.26460 -12.19890 -12.09437 -11.80823 -11.61207 -11.37946 -10.83291 -10.62113 -9.63104 -9.58646 -8.60585 -8.23732 -6.37457 -0.06255 0.23179 1.02879 1.18035 1.40610 1.41008 1.54546 1.76002 2.39951 2.69721 3.09518 3.55334 3.67416 3.97149 4.03025 4.25217 4.28807 4.37646 4.43414 4.49543 4.58447 4.78054 4.84445 4.86665 4.89146 5.24916 5.27512 5.37344 5.38955 5.48870 5.54435 5.73130 5.88117 6.10433 6.76917 7.32154 8.88288 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.030981 B = 0.003959 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.552152 B = 7071.322759 C = 7581.196449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.065 4.065 3 C -0.118 4.118 4 C -0.095 4.095 5 C -0.126 4.126 6 C -0.035 4.035 7 Cl -0.075 7.075 8 C -0.083 4.083 9 C -0.044 4.044 10 S -0.292 6.292 11 C -0.052 4.052 12 C 0.046 3.954 13 C -0.542 4.542 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.972 3.028 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.278 1.278 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.158 0.842 25 H 0.166 0.834 26 H 0.149 0.851 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.078 0.922 31 H -0.002 1.002 32 H -0.006 1.006 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.760 17.149 13.985 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.114 4.114 5 C -0.144 4.144 6 C -0.063 4.063 7 Cl -0.046 7.046 8 C -0.086 4.086 9 C -0.191 4.191 10 S -0.062 6.062 11 C -0.200 4.200 12 C 0.007 3.993 13 C -0.581 4.581 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.796 3.204 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.204 1.204 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.112 0.888 24 H 0.176 0.824 25 H 0.183 0.817 26 H 0.167 0.833 27 H 0.106 0.894 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.089 17.440 12.871 23.135 hybrid contribution -0.554 -1.884 0.635 2.064 sum 7.535 15.556 13.506 21.935 Atomic orbital electron populations 1.20922 0.89547 1.03848 1.03150 1.20011 0.97382 0.91743 0.97586 1.21491 0.94707 0.97975 0.99385 1.21523 0.94299 0.98265 0.97325 1.21306 1.01418 0.90394 1.01331 1.21046 0.91772 0.88015 1.05488 1.98372 1.76169 1.33255 1.96802 1.19059 0.91638 0.94186 1.03668 1.22312 1.03741 0.97429 0.95584 1.87138 1.75634 1.30389 1.13026 1.23340 1.00410 0.93795 1.02417 1.18660 0.95219 0.94875 0.90496 1.21578 1.36487 1.06678 0.93377 0.91509 1.26021 0.96913 1.02019 0.94693 1.70123 1.47602 1.40775 0.98637 0.85298 0.78018 0.78236 0.78874 1.18288 1.20158 1.20371 0.90943 0.91533 0.88780 0.82395 0.81675 0.83348 0.89360 0.87619 0.91066 0.90338 0.98386 0.98796 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.61 71.24 0.68 -1.55 16 2 C -0.06 -1.40 5.88 -19.87 -0.12 -1.52 16 3 C -0.12 -1.93 9.70 22.27 0.22 -1.71 16 4 C -0.10 -1.45 10.05 22.27 0.22 -1.22 16 5 C -0.13 -2.45 9.83 22.29 0.22 -2.23 16 6 C -0.03 -0.88 6.31 22.32 0.14 -0.74 16 7 Cl -0.07 -2.03 27.30 -2.72 -0.07 -2.11 16 8 C -0.08 -2.18 5.14 -19.84 -0.10 -2.29 16 9 C -0.04 -1.27 5.26 71.23 0.37 -0.90 16 10 S -0.29 -11.23 21.72 -56.49 -1.23 -12.45 16 11 C -0.05 -2.24 5.88 71.98 0.42 -1.82 16 12 C 0.05 2.52 4.98 29.85 0.15 2.67 16 13 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 14 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 15 C 0.00 0.11 5.46 84.65 0.46 0.57 16 16 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 17 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.07 1.31 5.94 -2.39 -0.01 1.29 16 23 H 0.09 1.23 8.08 -2.39 -0.02 1.21 16 24 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 25 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 26 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 27 H 0.09 2.58 6.90 -2.39 -0.02 2.56 16 28 H 0.11 2.72 5.95 -2.39 -0.01 2.71 16 29 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -67.58 308.19 5.01 -62.57 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.10 Total: 4.56 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 2.91 Total: -41.60 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.28 Total: -57.23 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -11.23 SS G_CDS: -1.23 Total: -12.45 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.07 Total: -2.11 kcal Total: -67.58 5.01 -62.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419510371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.859 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds