Wall clock time and date at job start Mon Mar 30 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.81405 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46754 * 180.02562 * 12 11 10 14 14 N 1.29413 * 125.69831 * 90.02286 * 13 12 11 15 15 N 1.26396 * 116.47662 * 179.97438 * 14 13 12 16 16 C 1.29412 * 116.47463 * 0.02562 * 15 14 13 17 17 C 1.50707 * 125.69611 * 180.02562 * 16 15 14 18 18 C 1.53002 * 117.49470 * 8.72894 * 17 16 15 19 19 C 1.53001 * 117.50022 * 300.06673 * 17 16 15 20 20 S 1.71213 * 125.69426 * 269.71697 * 13 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47318 * 60.00517 * 9 7 2 23 23 H 1.08996 * 109.47240 * 299.99401 * 9 7 2 24 24 H 1.09004 * 109.46930 * 60.00099 * 10 9 7 25 25 H 1.09004 * 109.47059 * 300.00497 * 10 9 7 26 26 H 1.09000 * 109.47133 * 299.99843 * 12 11 10 27 27 H 1.08998 * 109.47280 * 60.00592 * 12 11 10 28 28 H 1.08993 * 115.55020 * 154.38921 * 17 16 15 29 29 H 1.08996 * 117.50118 * 359.97438 * 18 17 16 30 30 H 1.09005 * 117.49965 * 145.02001 * 18 17 16 31 31 H 1.08997 * 117.49648 * 214.97800 * 19 17 16 32 32 H 1.08996 * 117.50051 * 359.97189 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 6 2.6650 -6.4702 -0.0038 13 6 2.0634 -7.8519 -0.0050 14 7 1.7626 -8.5437 -1.0565 15 7 1.2649 -9.6879 -0.8550 16 6 1.1107 -10.0405 0.3806 17 6 0.5406 -11.3519 0.8563 18 6 0.2945 -12.4374 -0.1936 19 6 -0.8890 -11.6958 0.4332 20 16 1.6704 -8.7715 1.3847 21 1 -0.4849 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8920 23 1 0.6241 -2.5575 0.8880 24 1 2.8719 -3.6051 0.8873 25 1 2.8720 -3.6035 -0.8927 26 1 3.2812 -6.3418 -0.8937 27 1 3.2811 -6.3426 0.8863 28 1 0.8636 -11.6734 1.8464 29 1 0.5445 -12.2029 -1.2282 30 1 0.4550 -13.4731 0.1061 31 1 -1.5064 -12.2438 1.1449 32 1 -1.4173 -10.9733 -0.1888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419602158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:06 Heat of formation + Delta-G solvation = 73.127792 kcal Electronic energy + Delta-G solvation = -14851.599376 eV Core-core repulsion = 12259.168918 eV Total energy + Delta-G solvation = -2592.430457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.45325 -37.62852 -33.73859 -33.01702 -30.92683 -29.21539 -26.06648 -25.20986 -23.13590 -22.75821 -21.22970 -19.54944 -19.27217 -16.61626 -16.55466 -16.30430 -15.46246 -15.16495 -14.53098 -14.37121 -13.95367 -13.51732 -13.26723 -13.16331 -12.53409 -12.16076 -11.88586 -11.63313 -11.43804 -11.07520 -11.06846 -10.65921 -10.55772 -10.30410 -10.22818 -9.98639 -9.76024 -9.70005 -9.30503 -9.11520 -8.46011 -7.30248 -6.09518 -4.14480 0.15916 0.69617 1.22037 1.85477 2.58988 3.02045 3.26406 3.34128 3.37566 3.44586 3.67837 4.20044 4.39033 4.39266 4.45360 4.58883 4.74426 5.22987 5.23550 5.26306 5.28475 5.40427 5.46482 5.67970 5.80829 5.90637 6.08536 6.64168 7.51770 7.59214 7.86189 8.22410 8.43812 8.90604 9.49772 11.01308 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.058024 B = 0.002966 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.443192 B = 9437.097746 C = 9569.605984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.037 3.963 10 C -0.060 4.060 11 S -0.254 6.254 12 C -0.021 4.021 13 C 0.006 3.994 14 N -0.246 5.246 15 N -0.259 5.259 16 C 0.004 3.996 17 C -0.095 4.095 18 C -0.149 4.149 19 C -0.153 4.153 20 S 0.195 5.805 21 H 0.263 0.737 22 H 0.028 0.972 23 H 0.027 0.973 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -22.945 4.717 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.208 4.208 11 S -0.028 6.028 12 C -0.172 4.172 13 C -0.273 4.273 14 N -0.085 5.085 15 N -0.097 5.097 16 C -0.274 4.274 17 C -0.117 4.117 18 C -0.188 4.188 19 C -0.192 4.192 20 S 0.441 5.559 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.148 0.852 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.804 -23.027 4.373 23.508 hybrid contribution 1.731 1.247 -0.083 2.135 sum 3.536 -21.780 4.290 22.478 Atomic orbital electron populations 1.69980 1.06095 1.26846 1.49913 1.25021 0.94908 0.99367 0.94994 0.86452 0.79983 0.83359 0.77710 1.19669 1.20860 1.20868 1.21107 0.93048 0.90086 1.51868 0.92302 1.18922 0.93421 0.89124 0.98699 1.23801 1.01594 0.91797 1.03589 1.87306 1.14970 1.02404 1.98086 1.21704 0.99943 0.88509 1.07092 1.28357 1.04451 1.02354 0.92141 1.71463 1.11353 0.99305 1.26362 1.71396 1.13449 1.07904 1.16974 1.28244 1.04358 1.01913 0.92895 1.20374 1.00866 0.89958 1.00504 1.23072 1.01224 0.95833 0.98704 1.23112 0.89545 1.03193 1.03399 1.83644 1.54131 1.07126 1.11027 0.92768 0.95392 0.95440 0.90979 0.90876 0.86938 0.87866 0.85163 0.87284 0.87735 0.87489 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.95 4.98 -27.88 -0.14 0.81 16 10 C -0.06 -1.21 5.88 37.16 0.22 -0.99 16 11 S -0.25 -4.67 21.72 -107.50 -2.33 -7.00 16 12 C -0.02 -0.29 6.54 36.01 0.24 -0.06 16 13 C 0.01 0.08 6.79 -13.29 -0.09 -0.01 16 14 N -0.25 -4.01 11.66 32.58 0.38 -3.63 16 15 N -0.26 -3.87 11.21 32.58 0.37 -3.50 16 16 C 0.00 0.05 7.08 -13.29 -0.09 -0.04 16 17 C -0.09 -0.78 6.30 -91.77 -0.58 -1.36 16 18 C -0.15 -1.09 10.14 -26.69 -0.27 -1.36 16 19 C -0.15 -1.13 10.24 -26.69 -0.27 -1.40 16 20 S 0.19 2.18 23.04 -107.50 -2.48 -0.30 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 25 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 26 H 0.11 1.50 8.14 -51.92 -0.42 1.07 16 27 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 28 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.11 0.98 7.88 -51.93 -0.41 0.57 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 309.64 15.07 4.67 4.67 Total: -1.00 -31.66 309.64 -9.27 -40.93 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -4.18 Total: -4.12 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -1.40 Total: -17.50 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 1.48 Total: -32.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -4.81 Total: -7.30 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.66 -9.27 -40.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419602158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.056 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds