Wall clock time and date at job start Mon Mar 30 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47364 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.81405 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46754 * 180.02562 * 12 11 10 14 14 N 1.29413 * 125.69831 * 90.02286 * 13 12 11 15 15 N 1.26396 * 116.47662 * 179.97438 * 14 13 12 16 16 C 1.29412 * 116.47463 * 0.02562 * 15 14 13 17 17 C 1.50707 * 125.69611 * 180.02562 * 16 15 14 18 18 C 1.53002 * 117.49470 * 8.72894 * 17 16 15 19 19 C 1.53001 * 117.50022 * 300.06673 * 17 16 15 20 20 S 1.71213 * 125.69426 * 269.71697 * 13 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47318 * 60.00517 * 9 7 2 23 23 H 1.08996 * 109.47240 * 299.99401 * 9 7 2 24 24 H 1.09004 * 109.46930 * 60.00099 * 10 9 7 25 25 H 1.09004 * 109.47059 * 300.00497 * 10 9 7 26 26 H 1.09000 * 109.47133 * 299.99843 * 12 11 10 27 27 H 1.08998 * 109.47280 * 60.00592 * 12 11 10 28 28 H 1.08993 * 115.55020 * 154.38921 * 17 16 15 29 29 H 1.08996 * 117.50118 * 359.97438 * 18 17 16 30 30 H 1.09005 * 117.49965 * 145.02001 * 18 17 16 31 31 H 1.08997 * 117.49648 * 214.97800 * 19 17 16 32 32 H 1.08996 * 117.50051 * 359.97189 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 6 2.6650 -6.4702 -0.0038 13 6 2.0634 -7.8519 -0.0050 14 7 1.7626 -8.5437 -1.0565 15 7 1.2649 -9.6879 -0.8550 16 6 1.1107 -10.0405 0.3806 17 6 0.5406 -11.3519 0.8563 18 6 0.2945 -12.4374 -0.1936 19 6 -0.8890 -11.6958 0.4332 20 16 1.6704 -8.7715 1.3847 21 1 -0.4849 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8920 23 1 0.6241 -2.5575 0.8880 24 1 2.8719 -3.6051 0.8873 25 1 2.8720 -3.6035 -0.8927 26 1 3.2812 -6.3418 -0.8937 27 1 3.2811 -6.3426 0.8863 28 1 0.8636 -11.6734 1.8464 29 1 0.5445 -12.2029 -1.2282 30 1 0.4550 -13.4731 0.1061 31 1 -1.5064 -12.2438 1.1449 32 1 -1.4173 -10.9733 -0.1888 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419602158.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:06 Heat of formation + Delta-G solvation = 54.409581 kcal Electronic energy + Delta-G solvation = -14852.411058 eV Core-core repulsion = 12259.168918 eV Total energy + Delta-G solvation = -2593.242140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.48152 -38.27519 -35.78697 -34.05099 -32.92386 -30.22436 -27.47619 -26.81675 -24.04013 -23.32073 -23.10279 -20.51308 -20.23401 -18.68170 -17.54987 -17.36967 -16.62246 -16.48912 -16.08079 -15.73416 -15.06613 -14.98437 -14.48026 -14.28122 -13.93708 -13.54849 -13.28523 -12.94637 -12.52039 -12.43642 -12.23411 -12.19021 -11.82320 -11.71332 -11.52850 -11.45699 -11.13443 -10.96110 -10.69194 -10.61832 -10.36260 -8.76925 -8.23585 -6.36998 -0.84943 -0.23356 0.24232 0.59688 1.40824 1.42131 1.46207 1.55771 1.63786 2.40539 2.71177 2.85190 3.10317 3.31285 3.64235 3.80424 3.86991 4.00078 4.21230 4.26475 4.33605 4.35870 4.47317 4.76169 4.85907 4.91480 5.08305 5.24105 5.38326 5.48343 5.73566 6.09772 6.78013 7.32802 7.41991 8.88536 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.058024 B = 0.002966 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.443192 B = 9437.097746 C = 9569.605984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.043 3.957 10 C -0.046 4.046 11 S -0.293 6.293 12 C -0.003 4.003 13 C -0.024 4.024 14 N -0.279 5.279 15 N -0.294 5.294 16 C 0.005 3.995 17 C -0.107 4.107 18 C -0.145 4.145 19 C -0.149 4.149 20 S 0.258 5.742 21 H 0.265 0.735 22 H -0.007 1.007 23 H -0.001 1.001 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.134 0.866 28 H 0.163 0.837 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -24.228 6.212 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.089 0.911 9 C 0.004 3.996 10 C -0.194 4.194 11 S -0.067 6.067 12 C -0.154 4.154 13 C -0.303 4.303 14 N -0.118 5.118 15 N -0.132 5.132 16 C -0.273 4.273 17 C -0.129 4.129 18 C -0.184 4.184 19 C -0.188 4.188 20 S 0.504 5.496 21 H 0.074 0.926 22 H 0.012 0.988 23 H 0.017 0.983 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.152 0.848 28 H 0.180 0.820 29 H 0.104 0.896 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.270 -24.309 5.871 25.221 hybrid contribution 1.218 1.462 -0.512 1.970 sum 4.488 -22.847 5.359 23.893 Atomic orbital electron populations 1.70124 1.08032 1.27995 1.51121 1.26039 0.95771 1.03617 0.94436 0.85290 0.79154 0.78212 0.77718 1.18070 1.20590 1.20314 1.21572 0.93826 0.91116 1.51299 0.91098 1.18692 0.93782 0.91450 0.95655 1.23420 1.00145 0.91013 1.04818 1.87366 1.17859 1.03246 1.98258 1.21706 0.98011 0.86656 1.09006 1.28394 1.05599 1.02744 0.93572 1.71422 1.12101 1.00190 1.28100 1.71373 1.15156 1.07990 1.18718 1.28922 1.02620 1.03292 0.92451 1.20780 1.01462 0.88596 1.02109 1.23133 1.00845 0.97049 0.97369 1.23185 0.89299 1.02761 1.03541 1.83343 1.52544 1.05261 1.08426 0.92602 0.98817 0.98253 0.89208 0.90032 0.86355 0.84759 0.81972 0.89561 0.84779 0.84538 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.04 2.26 4.98 29.85 0.15 2.41 16 10 C -0.05 -1.85 5.88 71.98 0.42 -1.42 16 11 S -0.29 -10.79 21.72 -56.49 -1.23 -12.02 16 12 C 0.00 -0.07 6.54 71.24 0.47 0.39 16 13 C -0.02 -0.67 6.79 88.47 0.60 -0.07 16 14 N -0.28 -9.10 11.66 -50.85 -0.59 -9.69 16 15 N -0.29 -8.77 11.21 -50.84 -0.57 -9.34 16 16 C 0.01 0.11 7.08 88.47 0.63 0.74 16 17 C -0.11 -1.51 6.30 -11.54 -0.07 -1.58 16 18 C -0.14 -1.83 10.14 30.62 0.31 -1.52 16 19 C -0.15 -1.88 10.24 30.62 0.31 -1.56 16 20 S 0.26 5.23 23.04 -56.49 -1.30 3.93 16 21 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 22 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 23 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 24 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 25 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 26 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.52 7.88 -2.39 -0.02 1.50 16 30 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -70.99 309.64 3.25 -67.74 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.11 Total: 2.29 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.51 Total: -31.82 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -0.88 Total: -75.56 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -2.53 Total: -8.09 kcal Total: -70.99 3.25 -67.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419602158.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.150 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds