Wall clock time and date at job start Mon Mar 30 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99907 * 2 1 4 4 H 1.48508 * 109.47104 * 269.99551 * 3 2 1 5 5 H 1.48499 * 109.47593 * 29.99383 * 3 2 1 6 6 H 1.48497 * 109.47386 * 149.99953 * 3 2 1 7 7 C 1.37873 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47181 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.81395 * 103.00218 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47291 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47104 * 180.02562 * 13 12 11 15 15 C 1.38239 * 119.98824 * 270.29704 * 14 13 12 16 16 C 1.38212 * 120.01553 * 180.25745 * 15 14 13 17 17 C 1.38361 * 119.98341 * 359.46433 * 16 15 14 18 18 Cl 1.73597 * 120.00859 * 180.27890 * 17 16 15 19 19 C 1.38346 * 119.97306 * 0.25744 * 17 16 15 20 20 C 1.38210 * 119.98768 * 0.02562 * 19 17 16 21 21 H 0.96997 * 120.00257 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47057 * 59.99813 * 9 7 2 23 23 H 1.09007 * 109.47204 * 299.99986 * 9 7 2 24 24 H 1.09000 * 109.47084 * 60.00066 * 10 9 7 25 25 H 1.08994 * 109.47267 * 299.99943 * 10 9 7 26 26 H 1.09004 * 109.47170 * 60.00103 * 12 11 10 27 27 H 1.09000 * 109.47471 * 300.00730 * 12 11 10 28 28 H 1.08993 * 109.47106 * 60.00187 * 13 12 11 29 29 H 1.08996 * 109.46854 * 299.99845 * 13 12 11 30 30 H 1.08004 * 119.99430 * 359.97438 * 15 14 13 31 31 H 1.08002 * 120.01126 * 179.75014 * 16 15 14 32 32 H 1.08002 * 120.00348 * 180.02562 * 19 17 16 33 33 H 1.08002 * 119.99295 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2331 0.0013 12 6 2.6650 -6.4702 0.0004 13 6 2.0542 -7.8730 0.0003 14 6 3.1564 -8.9008 0.0002 15 6 3.6659 -9.3673 -1.1971 16 6 4.6731 -10.3138 -1.1979 17 6 5.1790 -10.7862 0.0001 18 17 6.4490 -11.9697 -0.0001 19 6 4.6726 -10.3146 1.1981 20 6 3.6614 -9.3725 1.1975 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 3.2818 -6.3422 0.8900 27 1 3.2806 -6.3422 -0.8899 28 1 1.4377 -8.0008 -0.8894 29 1 1.4385 -8.0012 0.8905 30 1 3.2738 -8.9955 -2.1323 31 1 5.0683 -10.6813 -2.1334 32 1 5.0674 -10.6827 2.1336 33 1 3.2657 -9.0046 2.1327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419608058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:36 Heat of formation + Delta-G solvation = -12.550560 kcal Electronic energy + Delta-G solvation = -14717.829773 eV Core-core repulsion = 12087.347567 eV Total energy + Delta-G solvation = -2630.482207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72514 -36.86346 -34.16307 -33.69076 -31.37308 -30.87324 -29.43427 -25.39562 -24.15429 -23.15057 -21.50006 -20.75070 -17.40890 -16.52581 -16.02811 -15.95468 -15.29987 -14.51563 -14.46202 -14.09654 -13.89864 -13.81412 -13.45764 -13.03204 -12.80853 -12.19288 -11.98783 -11.62450 -11.46052 -11.28667 -11.26542 -11.08151 -11.01024 -10.57764 -10.20332 -9.67718 -9.50468 -9.35178 -9.09228 -8.82954 -8.43267 -7.17738 -6.07182 -4.11835 0.81006 0.98513 1.82809 2.16272 3.21601 3.28255 3.31632 3.34842 3.37980 4.40748 4.44547 4.57052 4.62765 4.87698 5.00822 5.07157 5.14104 5.28357 5.33542 5.57297 5.57394 5.73375 5.91656 5.92473 5.96587 5.97974 6.17035 6.30232 6.49953 6.71396 7.55332 7.63991 7.89114 8.26269 8.93182 9.52132 11.03623 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.042204 B = 0.002578 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.285421 B =10858.840444 C =11201.501195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.037 3.963 10 C -0.056 4.056 11 S -0.290 6.290 12 C -0.084 4.084 13 C -0.065 4.065 14 C -0.069 4.069 15 C -0.102 4.102 16 C -0.109 4.109 17 C -0.041 4.041 18 Cl -0.077 7.077 19 C -0.109 4.109 20 C -0.102 4.102 21 H 0.263 0.737 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -22.663 0.001 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.204 4.204 11 S -0.062 6.062 12 C -0.232 4.232 13 C -0.103 4.103 14 C -0.070 4.070 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.067 4.067 18 Cl -0.048 7.048 19 C -0.128 4.128 20 C -0.121 4.121 21 H 0.072 0.928 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.963 -22.821 0.007 24.171 hybrid contribution 1.953 1.030 -0.012 2.208 sum 9.916 -21.791 -0.005 23.941 Atomic orbital electron populations 1.69971 1.06069 1.26882 1.49989 1.25015 0.94906 0.99317 0.95045 0.86518 0.79758 0.83099 0.78184 1.20542 1.21081 1.19826 1.21096 0.92996 0.90291 1.51778 0.92479 1.18908 0.93400 0.89265 0.98550 1.23671 1.01305 0.92336 1.03103 1.86909 1.17473 1.03694 1.98098 1.23251 0.99794 0.95509 1.04662 1.20360 0.95175 0.90161 1.04597 1.20040 0.97207 0.96717 0.93080 1.21097 0.96170 0.96444 0.98370 1.21059 0.97207 0.97607 0.96889 1.20943 0.94413 0.96044 0.95349 1.98369 1.50664 1.56769 1.98975 1.21054 0.97156 0.97660 0.96890 1.21098 0.96140 0.96477 0.98366 0.92765 0.95535 0.95517 0.91418 0.91415 0.90485 0.90489 0.89744 0.89752 0.84826 0.84953 0.84954 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C -0.06 -1.17 5.88 37.16 0.22 -0.95 16 11 S -0.29 -5.19 21.74 -107.50 -2.34 -7.53 16 12 C -0.08 -1.09 5.92 37.16 0.22 -0.87 16 13 C -0.06 -0.69 5.35 -27.88 -0.15 -0.84 16 14 C -0.07 -0.67 5.13 -104.62 -0.54 -1.20 16 15 C -0.10 -0.93 9.70 -39.59 -0.38 -1.31 16 16 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 17 C -0.04 -0.38 6.32 -39.50 -0.25 -0.63 16 18 Cl -0.08 -0.67 28.96 -51.86 -1.50 -2.18 16 19 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 20 C -0.10 -0.93 9.70 -39.59 -0.38 -1.31 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 25 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 27 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 29 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 315.36 15.07 4.75 4.75 Total: -1.00 -29.69 315.36 -10.57 -40.26 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -4.61 Total: -3.47 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.59 Total: -22.31 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -5.19 SS G_CDS: -2.34 Total: -7.53 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.69 -10.57 -40.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419608058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.709 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds