Wall clock time and date at job start Mon Mar 30 2020 00:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99907 * 2 1 4 4 H 1.48508 * 109.47104 * 269.99551 * 3 2 1 5 5 H 1.48499 * 109.47593 * 29.99383 * 3 2 1 6 6 H 1.48497 * 109.47386 * 149.99953 * 3 2 1 7 7 C 1.37873 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99914 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47181 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.81395 * 103.00218 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47291 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47104 * 180.02562 * 13 12 11 15 15 C 1.38239 * 119.98824 * 270.29704 * 14 13 12 16 16 C 1.38212 * 120.01553 * 180.25745 * 15 14 13 17 17 C 1.38361 * 119.98341 * 359.46433 * 16 15 14 18 18 Cl 1.73597 * 120.00859 * 180.27890 * 17 16 15 19 19 C 1.38346 * 119.97306 * 0.25744 * 17 16 15 20 20 C 1.38210 * 119.98768 * 0.02562 * 19 17 16 21 21 H 0.96997 * 120.00257 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47057 * 59.99813 * 9 7 2 23 23 H 1.09007 * 109.47204 * 299.99986 * 9 7 2 24 24 H 1.09000 * 109.47084 * 60.00066 * 10 9 7 25 25 H 1.08994 * 109.47267 * 299.99943 * 10 9 7 26 26 H 1.09004 * 109.47170 * 60.00103 * 12 11 10 27 27 H 1.09000 * 109.47471 * 300.00730 * 12 11 10 28 28 H 1.08993 * 109.47106 * 60.00187 * 13 12 11 29 29 H 1.08996 * 109.46854 * 299.99845 * 13 12 11 30 30 H 1.08004 * 119.99430 * 359.97438 * 15 14 13 31 31 H 1.08002 * 120.01126 * 179.75014 * 16 15 14 32 32 H 1.08002 * 120.00348 * 180.02562 * 19 17 16 33 33 H 1.08002 * 119.99295 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2331 0.0013 12 6 2.6650 -6.4702 0.0004 13 6 2.0542 -7.8730 0.0003 14 6 3.1564 -8.9008 0.0002 15 6 3.6659 -9.3673 -1.1971 16 6 4.6731 -10.3138 -1.1979 17 6 5.1790 -10.7862 0.0001 18 17 6.4490 -11.9697 -0.0001 19 6 4.6726 -10.3146 1.1981 20 6 3.6614 -9.3725 1.1975 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8903 24 1 2.8720 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 3.2818 -6.3422 0.8900 27 1 3.2806 -6.3422 -0.8899 28 1 1.4377 -8.0008 -0.8894 29 1 1.4385 -8.0012 0.8905 30 1 3.2738 -8.9955 -2.1323 31 1 5.0683 -10.6813 -2.1334 32 1 5.0674 -10.6827 2.1336 33 1 3.2657 -9.0046 2.1327 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419608058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:36 Heat of formation + Delta-G solvation = -25.909266 kcal Electronic energy + Delta-G solvation = -14718.409050 eV Core-core repulsion = 12087.347567 eV Total energy + Delta-G solvation = -2631.061484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.41256 -37.55085 -35.77834 -34.99475 -32.90406 -32.03123 -30.26247 -27.38011 -25.17007 -23.81360 -23.08991 -21.85591 -18.67368 -18.08703 -17.12260 -16.79474 -16.52904 -16.25858 -15.74836 -15.13523 -14.95277 -14.68599 -14.46676 -14.40458 -13.87961 -13.67898 -13.36650 -12.96588 -12.71876 -12.58252 -12.25688 -12.23789 -12.15828 -12.01367 -11.74184 -11.67777 -11.18627 -10.80511 -10.60842 -10.01329 -9.56342 -8.63028 -8.23381 -6.36976 0.08793 0.32364 0.81291 1.15247 1.41253 1.42623 1.53911 1.78419 2.40382 2.61981 3.09831 3.76269 3.84859 3.96022 4.02603 4.09009 4.26055 4.37544 4.38713 4.39194 4.54188 4.73388 4.80429 4.87752 5.03084 5.07409 5.23726 5.25491 5.38030 5.49912 5.58676 5.73695 5.82755 6.10997 6.77443 7.32574 8.88379 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.042204 B = 0.002578 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.285421 B =10858.840444 C =11201.501195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.044 3.956 10 C -0.048 4.048 11 S -0.317 6.317 12 C -0.065 4.065 13 C -0.056 4.056 14 C -0.077 4.077 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.050 4.050 18 Cl -0.075 7.075 19 C -0.114 4.114 20 C -0.106 4.106 21 H 0.266 0.734 22 H -0.004 1.004 23 H -0.003 1.003 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.769 -23.298 -0.004 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.006 3.994 10 C -0.196 4.196 11 S -0.089 6.089 12 C -0.213 4.213 13 C -0.095 4.095 14 C -0.079 4.079 15 C -0.124 4.124 16 C -0.133 4.133 17 C -0.077 4.077 18 Cl -0.047 7.047 19 C -0.133 4.133 20 C -0.124 4.124 21 H 0.074 0.926 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.639 -23.462 0.001 25.365 hybrid contribution 1.438 1.088 -0.011 1.803 sum 11.077 -22.375 -0.009 24.967 Atomic orbital electron populations 1.70112 1.07946 1.28069 1.50961 1.26027 0.95804 1.03548 0.94380 0.85349 0.78600 0.77910 0.78594 1.19632 1.20708 1.18498 1.21553 0.93677 0.91449 1.51562 0.91545 1.18681 0.93691 0.91453 0.95602 1.23299 1.00047 0.92509 1.03750 1.86937 1.20032 1.03727 1.98193 1.23332 0.97878 0.94674 1.05456 1.20264 0.95513 0.88766 1.04924 1.19958 0.97289 0.96972 0.93686 1.21280 0.96062 0.96345 0.98734 1.21258 0.97098 0.97465 0.97439 1.21134 0.94562 0.96182 0.95798 1.98369 1.50595 1.56705 1.98984 1.21253 0.97048 0.97520 0.97440 1.21281 0.96035 0.96371 0.98730 0.92550 0.98517 0.98501 0.90710 0.90683 0.89678 0.89675 0.89498 0.89506 0.83627 0.83592 0.83594 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.43 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.04 2.36 4.98 29.85 0.15 2.51 16 10 C -0.05 -2.00 5.88 71.98 0.42 -1.58 16 11 S -0.32 -11.23 21.74 -56.49 -1.23 -12.46 16 12 C -0.07 -1.58 5.92 71.98 0.43 -1.15 16 13 C -0.06 -1.08 5.35 29.85 0.16 -0.92 16 14 C -0.08 -1.33 5.13 -19.86 -0.10 -1.43 16 15 C -0.11 -1.70 9.70 22.26 0.22 -1.48 16 16 C -0.11 -1.79 9.83 22.29 0.22 -1.57 16 17 C -0.05 -0.84 6.32 22.32 0.14 -0.70 16 18 Cl -0.08 -1.21 28.96 -2.72 -0.08 -1.29 16 19 C -0.11 -1.79 9.83 22.29 0.22 -1.57 16 20 C -0.11 -1.69 9.70 22.26 0.22 -1.48 16 21 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 22 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 24 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 29 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 30 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -64.03 315.36 4.85 -59.19 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.08 Total: 4.65 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 2.76 Total: -39.29 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.28 Total: -56.50 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -11.23 SS G_CDS: -1.23 Total: -12.46 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.29 kcal Total: -64.03 4.85 -59.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419608058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.279 kcal (2) G-P(sol) polarization free energy of solvation -64.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds