Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48504 * 109.47371 * 269.99931 * 3 2 1 5 5 H 1.48498 * 109.47401 * 30.00182 * 3 2 1 6 6 H 1.48504 * 109.46949 * 150.00168 * 3 2 1 7 7 C 1.37879 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00089 * 0.02562 * 7 2 1 10 10 S 1.81006 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.76203 * 100.00049 * 179.97438 * 10 9 7 12 12 N 1.31704 * 127.50917 * 179.97438 * 11 10 9 13 13 C 1.31252 * 116.78202 * 180.02562 * 12 11 10 14 14 C 1.50706 * 121.05894 * 180.02562 * 13 12 11 15 15 C 1.54265 * 110.03364 * 237.17004 * 14 13 12 16 16 C 1.54885 * 104.19397 * 217.10582 * 15 14 13 17 17 C 1.54889 * 102.75352 * 37.94434 * 16 15 14 18 18 C 1.53877 * 110.03022 * 120.00294 * 14 13 12 19 19 N 1.30136 * 117.88790 * 0.02562 * 13 12 11 20 20 S 1.69948 * 105.77213 * 359.97438 * 19 13 12 21 21 H 0.97000 * 119.99780 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47568 * 59.99826 * 9 7 2 23 23 H 1.09004 * 109.47054 * 299.99806 * 9 7 2 24 24 H 1.08996 * 110.01603 * 358.61885 * 14 13 12 25 25 H 1.08997 * 110.48437 * 335.78450 * 15 14 13 26 26 H 1.09001 * 110.48579 * 98.42781 * 15 14 13 27 27 H 1.09000 * 110.75703 * 279.62531 * 16 15 14 28 28 H 1.09006 * 110.75461 * 156.26234 * 16 15 14 29 29 H 1.08994 * 110.49128 * 203.37938 * 17 16 15 30 30 H 1.08997 * 110.59815 * 80.78475 * 17 16 15 31 31 H 1.08993 * 110.03362 * 238.57128 * 18 14 13 32 32 H 1.08999 * 110.03510 * 359.95884 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 16 2.4272 -3.8750 -0.0014 11 6 1.3071 -5.2351 -0.0021 12 7 1.6037 -6.5183 -0.0026 13 6 0.5954 -7.3585 -0.0036 14 6 0.8244 -8.8480 -0.0037 15 6 0.1291 -9.4895 -1.2223 16 6 -0.4043 -10.8415 -0.6869 17 6 -0.8703 -10.4821 0.7458 18 6 0.1890 -9.4791 1.2476 19 7 -0.6086 -6.8644 -0.0045 20 16 -0.4150 -5.1760 -0.0033 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8920 23 1 0.6240 -2.5575 0.8880 24 1 1.8931 -9.0612 -0.0276 25 1 -0.6945 -8.8632 -1.5649 26 1 0.8453 -9.6538 -2.0274 27 1 0.3907 -11.5867 -0.6590 28 1 -1.2425 -11.1918 -1.2893 29 1 -0.8835 -11.3706 1.3769 30 1 -1.8557 -10.0167 0.7231 31 1 0.9491 -9.9992 1.8304 32 1 -0.2844 -8.7079 1.8553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420637611.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = 25.292433 kcal Electronic energy + Delta-G solvation = -15509.799632 eV Core-core repulsion = 12915.294878 eV Total energy + Delta-G solvation = -2594.504754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.16256 -37.52101 -33.41296 -32.01503 -29.32578 -28.95665 -28.80258 -25.58990 -23.43760 -21.26839 -20.77796 -19.08325 -18.65594 -17.03734 -16.35149 -15.90169 -15.34363 -14.93709 -14.78527 -13.84285 -13.43619 -13.39188 -12.76547 -12.62395 -11.95651 -11.84181 -11.59693 -11.30360 -11.22205 -11.18060 -11.04338 -10.98872 -10.77687 -10.61855 -10.49796 -10.34200 -9.84409 -9.63635 -9.17675 -9.04797 -8.75668 -7.18180 -6.39793 -4.48903 0.67668 1.38321 1.65519 2.12301 2.82268 3.15939 3.22619 3.23704 3.31690 4.17899 4.21278 4.49890 4.55171 4.88416 4.97716 5.32145 5.40143 5.43697 5.52097 5.56497 5.67909 5.77713 5.80184 5.94618 6.09035 6.10577 6.24508 6.30152 6.67072 6.72725 7.48420 7.67892 7.85800 8.51880 9.17009 10.70916 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.057451 B = 0.003831 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.253347 B = 7306.629451 C = 7556.874813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.039 3.961 10 S 0.028 5.972 11 C 0.061 3.939 12 N -0.519 5.519 13 C 0.280 3.720 14 C -0.004 4.004 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.112 4.112 19 N -0.498 5.498 20 S 0.232 5.768 21 H 0.270 0.730 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 -15.623 -0.015 15.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.738 3.262 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.091 0.909 9 C -0.109 4.109 10 S 0.260 5.740 11 C -0.331 4.331 12 N -0.247 5.247 13 C -0.012 4.012 14 C -0.027 4.027 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.151 4.151 19 N -0.330 5.330 20 S 0.369 5.631 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.696 -15.396 -0.006 15.412 hybrid contribution -0.137 0.610 0.008 0.625 sum -0.832 -14.786 0.003 14.809 Atomic orbital electron populations 1.69943 1.06185 1.27958 1.47780 1.24949 0.95038 0.99400 0.93942 0.86268 0.79721 0.81665 0.78579 1.20098 1.20748 1.19333 1.20461 0.93468 0.87890 1.54819 0.90919 1.21807 0.95144 0.91709 1.02287 1.85783 1.11331 0.91873 1.85037 1.31095 1.02628 1.00454 0.98902 1.67645 1.33447 0.99105 1.24537 1.23477 0.83292 0.98752 0.95707 1.20434 1.01775 0.83872 0.96667 1.22459 1.00216 0.96412 0.96242 1.22472 1.00451 0.96733 0.96243 1.22331 0.99032 0.98343 0.96138 1.22166 0.98182 0.98494 0.96235 1.77159 1.24187 1.01620 1.30068 1.85300 1.03693 1.07423 1.66636 0.92002 0.92671 0.92668 0.88301 0.90613 0.91247 0.91364 0.91408 0.91686 0.91308 0.91181 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.93 13.29 55.43 0.74 -23.20 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 19.88 29.54 -169.99 -5.02 14.85 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.53 -13.51 9.13 -34.44 -0.31 -13.82 16 8 H 0.07 1.82 7.71 -52.48 -0.40 1.41 16 9 C 0.04 0.92 4.53 36.00 0.16 1.08 16 10 S 0.03 0.58 22.23 -107.50 -2.39 -1.81 16 11 C 0.06 1.22 7.93 52.71 0.42 1.64 16 12 N -0.52 -9.97 10.61 -14.07 -0.15 -10.12 16 13 C 0.28 4.82 6.01 -159.06 -0.96 3.87 16 14 C 0.00 -0.05 3.35 -90.65 -0.30 -0.35 16 15 C -0.11 -1.32 6.33 -25.07 -0.16 -1.48 16 16 C -0.12 -1.11 6.91 -24.74 -0.17 -1.28 16 17 C -0.12 -1.18 6.83 -25.07 -0.17 -1.35 16 18 C -0.11 -1.29 6.39 -25.61 -0.16 -1.46 16 19 N -0.50 -9.00 11.42 29.55 0.34 -8.66 16 20 S 0.23 4.42 22.62 -107.50 -2.43 1.99 16 21 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 22 H 0.06 1.35 8.10 -51.91 -0.42 0.93 16 23 H 0.06 1.35 8.10 -51.91 -0.42 0.93 16 24 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.08 1.00 7.47 -51.93 -0.39 0.62 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.91 7.57 -51.93 -0.39 0.52 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -27.07 298.13 -10.30 -37.37 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -4.12 Total: -3.56 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.75 Total: -11.36 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.92 Total: -41.97 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -4.82 Total: 0.18 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.07 -10.30 -37.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420637611.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.660 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds