Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48504 * 109.47371 * 269.99931 * 3 2 1 5 5 H 1.48498 * 109.47401 * 30.00182 * 3 2 1 6 6 H 1.48504 * 109.46949 * 150.00168 * 3 2 1 7 7 C 1.37879 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00089 * 0.02562 * 7 2 1 10 10 S 1.81006 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.76203 * 100.00049 * 179.97438 * 10 9 7 12 12 N 1.31704 * 127.50917 * 179.97438 * 11 10 9 13 13 C 1.31252 * 116.78202 * 180.02562 * 12 11 10 14 14 C 1.50706 * 121.05894 * 180.02562 * 13 12 11 15 15 C 1.54265 * 110.03364 * 237.17004 * 14 13 12 16 16 C 1.54885 * 104.19397 * 217.10582 * 15 14 13 17 17 C 1.54889 * 102.75352 * 37.94434 * 16 15 14 18 18 C 1.53877 * 110.03022 * 120.00294 * 14 13 12 19 19 N 1.30136 * 117.88790 * 0.02562 * 13 12 11 20 20 S 1.69948 * 105.77213 * 359.97438 * 19 13 12 21 21 H 0.97000 * 119.99780 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47568 * 59.99826 * 9 7 2 23 23 H 1.09004 * 109.47054 * 299.99806 * 9 7 2 24 24 H 1.08996 * 110.01603 * 358.61885 * 14 13 12 25 25 H 1.08997 * 110.48437 * 335.78450 * 15 14 13 26 26 H 1.09001 * 110.48579 * 98.42781 * 15 14 13 27 27 H 1.09000 * 110.75703 * 279.62531 * 16 15 14 28 28 H 1.09006 * 110.75461 * 156.26234 * 16 15 14 29 29 H 1.08994 * 110.49128 * 203.37938 * 17 16 15 30 30 H 1.08997 * 110.59815 * 80.78475 * 17 16 15 31 31 H 1.08993 * 110.03362 * 238.57128 * 18 14 13 32 32 H 1.08999 * 110.03510 * 359.95884 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 16 2.4272 -3.8750 -0.0014 11 6 1.3071 -5.2351 -0.0021 12 7 1.6037 -6.5183 -0.0026 13 6 0.5954 -7.3585 -0.0036 14 6 0.8244 -8.8480 -0.0037 15 6 0.1291 -9.4895 -1.2223 16 6 -0.4043 -10.8415 -0.6869 17 6 -0.8703 -10.4821 0.7458 18 6 0.1890 -9.4791 1.2476 19 7 -0.6086 -6.8644 -0.0045 20 16 -0.4150 -5.1760 -0.0033 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5563 -0.8920 23 1 0.6240 -2.5575 0.8880 24 1 1.8931 -9.0612 -0.0276 25 1 -0.6945 -8.8632 -1.5649 26 1 0.8453 -9.6538 -2.0274 27 1 0.3907 -11.5867 -0.6590 28 1 -1.2425 -11.1918 -1.2893 29 1 -0.8835 -11.3706 1.3769 30 1 -1.8557 -10.0167 0.7231 31 1 0.9491 -9.9992 1.8304 32 1 -0.2844 -8.7079 1.8553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420637611.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = 11.323698 kcal Electronic energy + Delta-G solvation = -15510.405362 eV Core-core repulsion = 12915.294878 eV Total energy + Delta-G solvation = -2595.110484 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.54237 -38.53194 -35.37758 -33.45371 -30.91236 -30.38590 -29.66805 -27.06771 -25.29364 -22.55367 -21.57452 -20.31979 -20.14623 -18.80798 -18.11136 -16.96908 -16.71079 -16.38813 -16.18381 -15.24497 -14.78042 -14.62095 -14.44836 -14.27871 -13.47069 -13.24409 -12.81485 -12.77277 -12.61972 -12.42187 -12.26525 -12.07634 -11.95513 -11.87619 -11.68618 -11.63597 -11.42145 -11.34831 -10.80328 -10.79762 -10.46992 -8.82918 -8.36835 -6.53141 -0.86911 -0.18309 0.01868 0.64018 1.38285 1.45272 1.45571 1.50025 1.58991 2.35999 2.89775 2.99571 3.60645 3.66563 3.94683 4.34121 4.45124 4.48414 4.53957 4.59441 4.72470 4.75096 4.78424 4.80010 4.90502 5.04867 5.22779 5.23344 5.32866 5.48063 5.49947 5.72593 6.36665 6.54001 7.17173 8.74879 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.057451 B = 0.003831 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.253347 B = 7306.629451 C = 7556.874813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.041 3.959 10 S 0.053 5.947 11 C 0.049 3.951 12 N -0.523 5.523 13 C 0.279 3.721 14 C -0.009 4.009 15 C -0.114 4.114 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.111 4.111 19 N -0.497 5.497 20 S 0.220 5.780 21 H 0.273 0.727 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.110 0.890 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 -17.086 -0.034 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.584 4.584 8 H 0.094 0.906 9 C -0.108 4.108 10 S 0.284 5.716 11 C -0.344 4.344 12 N -0.251 5.251 13 C -0.013 4.013 14 C -0.032 4.032 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.149 4.149 19 N -0.329 5.329 20 S 0.357 5.643 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.128 0.872 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.218 -16.883 -0.026 16.885 hybrid contribution -0.450 0.923 0.017 1.027 sum -0.232 -15.960 -0.009 15.962 Atomic orbital electron populations 1.70047 1.07707 1.28965 1.48681 1.25850 0.95814 1.02898 0.93313 0.85255 0.78603 0.77306 0.78818 1.19433 1.20398 1.18485 1.20819 0.93874 0.88978 1.54722 0.90560 1.21523 0.95526 0.93020 1.00697 1.85503 1.09676 0.90649 1.85779 1.31057 1.02912 1.00783 0.99669 1.67716 1.34235 0.98865 1.24320 1.24232 0.82545 1.00375 0.94125 1.20773 1.02904 0.81100 0.98443 1.22473 0.99635 0.97330 0.95870 1.22469 1.01381 0.95609 0.95494 1.22333 0.97636 0.98553 0.97058 1.22196 0.99089 0.98331 0.95321 1.77244 1.24610 1.00600 1.30423 1.85355 1.03453 1.08720 1.66809 0.91772 0.94304 0.94311 0.87217 0.92809 0.90118 0.89257 0.90348 0.89386 0.92670 0.89083 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.47 13.29 21.45 0.28 -50.19 16 2 C 0.02 1.25 5.46 84.65 0.46 1.72 16 3 Si 0.98 40.45 29.54 68.60 2.03 42.47 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 7 C -0.54 -28.17 9.13 25.60 0.23 -27.94 16 8 H 0.08 3.80 7.71 -2.91 -0.02 3.78 16 9 C 0.04 1.99 4.53 71.23 0.32 2.31 16 10 S 0.05 2.17 22.23 -56.49 -1.26 0.91 16 11 C 0.05 1.95 7.93 130.26 1.03 2.98 16 12 N -0.52 -19.82 10.61 -198.41 -2.10 -21.93 16 13 C 0.28 9.44 6.01 139.40 0.84 10.28 16 14 C -0.01 -0.21 3.35 -10.81 -0.04 -0.25 16 15 C -0.11 -2.41 6.33 31.67 0.20 -2.21 16 16 C -0.11 -1.70 6.91 31.88 0.22 -1.48 16 17 C -0.12 -2.01 6.83 31.67 0.22 -1.79 16 18 C -0.11 -2.34 6.39 31.32 0.20 -2.14 16 19 N -0.50 -17.97 11.42 -60.42 -0.69 -18.66 16 20 S 0.22 8.53 22.62 -56.49 -1.28 7.25 16 21 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 22 H 0.04 1.98 8.10 -2.39 -0.02 1.96 16 23 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 24 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.05 1.37 7.47 -2.39 -0.02 1.36 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.14 7.57 -2.39 -0.02 1.12 16 Total: -1.00 -57.63 298.13 1.79 -55.83 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: 1.12 Total: 2.81 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.69 Total: -18.51 kcal Atomic # 7 Polarization: -88.26 SS G_CDS: -2.51 Total: -90.77 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 16 Polarization: 10.70 SS G_CDS: -2.53 Total: 8.17 kcal Total: -57.63 1.79 -55.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420637611.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.158 kcal (2) G-P(sol) polarization free energy of solvation -57.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds