Wall clock time and date at job start Mon Mar 30 2020 01:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47145 * 179.97438 * 10 9 7 12 12 O 1.42109 * 110.54012 * 291.61993 * 11 10 9 13 13 O 1.42095 * 110.54467 * 68.37106 * 11 10 9 14 14 C 1.76198 * 104.45082 * 179.97438 * 11 10 9 15 15 N 1.30417 * 125.64693 * 90.01747 * 14 11 10 16 16 C 1.34494 * 109.29916 * 180.02562 * 15 14 11 17 17 C 1.34431 * 107.86085 * 359.97438 * 16 15 14 18 18 N 1.34990 * 125.64764 * 269.72072 * 14 11 10 19 19 H 0.96995 * 126.41957 * 359.97411 * 18 14 11 20 20 C 1.51173 * 110.52966 * 180.02562 * 17 16 15 21 21 C 1.54481 * 104.94249 * 16.82927 * 20 17 16 22 22 C 1.51373 * 141.86224 * 179.97438 * 16 15 14 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 25 25 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 26 26 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 27 27 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 28 28 H 1.09000 * 110.34474 * 135.69362 * 20 17 16 29 29 H 1.09007 * 110.35178 * 257.85419 * 20 17 16 30 30 H 1.09001 * 110.94570 * 92.62097 * 21 20 17 31 31 H 1.09005 * 110.94394 * 216.28676 * 21 20 17 32 32 H 1.08997 * 110.33454 * 282.02833 * 22 16 15 33 33 H 1.08998 * 110.33634 * 44.27283 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.6648 -5.4193 1.2387 13 8 0.6638 -5.4201 -1.2353 14 6 2.5961 -6.4670 0.0005 15 7 3.1392 -6.9994 1.0599 16 6 4.0607 -7.9027 0.6807 17 6 4.0852 -7.9275 -0.6631 18 7 3.1531 -7.0218 -1.0968 19 1 2.9359 -6.8162 -2.0195 20 6 5.1051 -8.9284 -1.1564 21 6 5.4045 -9.8266 0.0643 22 6 5.0649 -8.8866 1.2420 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 -0.8895 27 1 2.8719 -3.6043 0.8905 28 1 4.6904 -9.5220 -1.9711 29 1 6.0105 -8.4170 -1.4837 30 1 4.7598 -10.7055 0.0688 31 1 6.4551 -10.1162 0.0867 32 1 5.9595 -8.3635 1.5798 33 1 4.6232 -9.4522 2.0624 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427065673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:28 Heat of formation + Delta-G solvation = -44.037892 kcal Electronic energy + Delta-G solvation = -18179.744189 eV Core-core repulsion = 15139.480176 eV Total energy + Delta-G solvation = -3040.264013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.57878 -38.35960 -37.44835 -37.20648 -35.94107 -33.89305 -33.19635 -29.33926 -28.62785 -27.63836 -24.41076 -23.24622 -22.25390 -21.13713 -20.16497 -19.36711 -18.60080 -17.45022 -17.35596 -17.00731 -16.79904 -16.49720 -15.40516 -15.27716 -14.80237 -14.48621 -13.96315 -13.78893 -13.77903 -13.44427 -13.37442 -13.28911 -12.94459 -12.84911 -12.61847 -12.28790 -12.17230 -12.10785 -11.88843 -11.77185 -11.31797 -11.26280 -11.14622 -10.63899 -9.59259 -8.25979 -6.39983 -1.19007 0.32904 1.42591 1.44354 1.46464 1.54000 1.55594 1.79124 2.38754 2.69577 2.99614 3.08098 3.24215 3.52480 3.91162 3.94882 4.06698 4.17192 4.23234 4.45404 4.66255 4.76812 4.78235 4.93674 4.98746 5.14154 5.23236 5.24982 5.34483 5.45288 5.67772 5.97968 6.03708 6.53492 6.72758 7.30061 8.86281 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.032235 B = 0.004312 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.412824 B = 6492.530813 C = 6862.218365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.549 4.549 11 S 2.529 3.471 12 O -0.954 6.954 13 O -0.957 6.957 14 C -0.342 4.342 15 N -0.421 5.421 16 C -0.062 4.062 17 C 0.001 3.999 18 N -0.492 5.492 19 H 0.441 0.559 20 C -0.036 4.036 21 C -0.101 4.101 22 C -0.039 4.039 23 H 0.268 0.732 24 H 0.020 0.980 25 H 0.013 0.987 26 H 0.154 0.846 27 H 0.144 0.856 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.978 -18.734 -4.368 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.683 4.683 11 S 2.707 3.293 12 O -0.951 6.951 13 O -0.954 6.954 14 C -0.680 4.680 15 N -0.142 5.142 16 C -0.197 4.197 17 C -0.123 4.123 18 N -0.096 5.096 19 H 0.283 0.717 20 C -0.074 4.074 21 C -0.140 4.140 22 C -0.078 4.078 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.172 0.828 27 H 0.162 0.838 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.115 0.885 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.675 -18.635 -3.540 23.384 hybrid contribution 0.354 1.098 -0.961 1.502 sum 14.029 -17.537 -4.501 22.904 Atomic orbital electron populations 1.70092 1.07984 1.28421 1.50600 1.26076 0.95856 1.03730 0.94280 0.85307 0.78575 0.77663 0.78681 1.19409 1.20870 1.18376 1.21462 0.94043 0.90465 1.51936 0.90520 1.18949 0.93580 0.92244 0.97369 1.30010 1.12498 1.12603 1.13186 1.05097 0.74296 0.76275 0.73606 1.93512 1.70483 1.85593 1.45494 1.93504 1.70558 1.86105 1.45185 1.36325 1.23116 1.22226 0.86351 1.69574 1.07348 1.08301 1.28995 1.22819 1.00807 1.01859 0.94220 1.23304 0.95365 0.96476 0.97162 1.42235 1.27851 1.29683 1.09833 0.71700 1.21005 0.93954 0.92365 1.00110 1.22494 1.04809 0.96514 0.90136 1.20715 0.94446 0.93100 0.99502 0.92289 0.96216 0.96869 0.82809 0.83757 0.87910 0.86702 0.89621 0.85872 0.88541 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 42.82 29.54 68.60 2.03 44.85 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.54 -29.52 9.11 25.60 0.23 -29.29 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 0.91 4.98 29.85 0.15 1.05 16 10 C -0.55 -21.11 5.92 71.98 0.43 -20.69 16 11 S 2.53 97.48 5.33 -56.49 -0.30 97.18 16 12 O -0.95 -44.26 17.93 -127.65 -2.29 -46.55 16 13 O -0.96 -38.71 17.94 -127.65 -2.29 -41.00 16 14 C -0.34 -11.63 7.74 180.30 1.40 -10.24 16 15 N -0.42 -15.30 11.23 -185.12 -2.08 -17.38 16 16 C -0.06 -1.71 7.98 41.49 0.33 -1.38 16 17 C 0.00 0.01 8.09 41.03 0.33 0.34 16 18 N -0.49 -12.74 6.15 -183.68 -1.13 -13.87 16 19 H 0.44 8.71 8.96 -92.71 -0.83 7.88 16 20 C -0.04 -0.36 6.79 30.50 0.21 -0.16 16 21 C -0.10 -0.80 7.14 31.60 0.23 -0.57 16 22 C -0.04 -0.64 6.79 30.56 0.21 -0.43 16 23 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.15 4.88 8.14 -2.39 -0.02 4.86 16 27 H 0.14 5.16 8.14 -2.39 -0.02 5.14 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -81.70 299.14 -1.51 -83.20 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.30 Total: 10.13 kcal Atomic # 6 Polarization: -64.90 SS G_CDS: 3.97 Total: -60.93 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.92 Total: -86.87 kcal Atomic # 8 Polarization: -82.97 SS G_CDS: -4.58 Total: -87.55 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 97.48 SS G_CDS: -0.30 Total: 97.18 kcal Total: -81.70 -1.51 -83.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427065673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.164 kcal (2) G-P(sol) polarization free energy of solvation -81.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds