Wall clock time and date at job start Mon Mar 30 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 115.55267 * 245.03888 * 3 2 1 5 5 S 1.81402 * 109.46873 * 34.41724 * 4 3 2 6 6 O 1.42097 * 110.54303 * 68.37811 * 5 4 3 7 7 O 1.42100 * 110.54629 * 291.62360 * 5 4 3 8 8 N 1.65606 * 104.45107 * 180.02562 * 5 4 3 9 9 C 1.36928 * 120.00222 * 89.99911 * 8 5 4 10 10 H 1.08005 * 120.00396 * 308.05400 * 9 8 5 11 11 C 1.38816 * 120.00037 * 128.04964 * 9 8 5 12 12 N 1.31614 * 119.99543 * 347.47969 * 11 9 8 13 13 Si 1.86797 * 119.99813 * 167.48174 * 11 9 8 14 14 H 1.48501 * 109.47586 * 90.00136 * 13 11 9 15 15 H 1.48506 * 109.47037 * 210.00020 * 13 11 9 16 16 H 1.48506 * 109.47457 * 329.99537 * 13 11 9 17 17 C 1.46504 * 119.99430 * 269.72993 * 8 5 4 18 18 C 1.52999 * 117.49438 * 181.47992 * 17 8 5 19 19 C 1.52997 * 60.00091 * 252.50994 * 18 17 8 20 20 C 1.52999 * 117.49847 * 30.71525 * 3 2 1 21 21 C 1.53000 * 117.49709 * 99.37228 * 3 2 1 22 22 H 1.09000 * 109.46963 * 274.42350 * 4 3 2 23 23 H 1.09000 * 109.47413 * 154.41783 * 4 3 2 24 24 H 0.97002 * 119.99471 * 175.37403 * 12 11 9 25 25 H 1.08992 * 115.55248 * 327.17990 * 17 8 5 26 26 H 1.09003 * 117.50067 * 359.97438 * 18 17 8 27 27 H 1.08999 * 117.50101 * 145.01952 * 18 17 8 28 28 H 1.09005 * 117.49457 * 252.51413 * 19 18 17 29 29 H 1.08995 * 117.52043 * 107.48193 * 19 18 17 30 30 H 1.09009 * 117.49285 * 215.00323 * 20 3 2 31 31 H 1.08994 * 117.50099 * 0.02562 * 20 3 2 32 32 H 1.09003 * 117.50143 * 359.97169 * 21 3 2 33 33 H 1.09000 * 117.49762 * 144.97299 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2677 0.5835 1.2514 5 16 2.2557 0.1936 2.7056 6 8 2.2879 -1.2010 2.9761 7 8 1.0253 0.9032 2.6617 8 7 3.0744 0.8752 3.9735 9 6 2.8075 2.1653 4.3467 10 1 2.8263 2.9553 3.6106 11 6 2.5126 2.4578 5.6713 12 7 2.2467 1.4846 6.5166 13 14 2.4931 4.2325 6.2538 14 1 1.1286 4.7939 6.0855 15 1 2.8775 4.2872 7.6872 16 1 3.4578 5.0274 5.4521 17 6 4.0802 0.0957 4.6997 18 6 4.7772 0.7699 5.8831 19 6 5.5399 0.5374 4.5773 20 6 3.3149 -1.1658 -0.6932 21 6 3.3143 0.2220 -1.3390 22 1 3.3524 1.6651 1.1472 23 1 4.2608 0.1512 1.3734 24 1 2.1068 1.6828 7.4558 25 1 3.8825 -0.9735 4.7743 26 1 4.4878 1.7935 6.1212 27 1 5.0381 0.1442 6.7366 28 1 6.3026 -0.2413 4.5718 29 1 5.7520 1.4076 3.9563 30 1 4.2500 -1.5180 -0.2575 31 1 2.6901 -1.9334 -1.1496 32 1 2.6890 0.3666 -2.2201 33 1 4.2487 0.7831 -1.3285 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547327426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:53 Heat of formation + Delta-G solvation = 29.840805 kcal Electronic energy + Delta-G solvation = -19280.313386 eV Core-core repulsion = 16243.252993 eV Total energy + Delta-G solvation = -3037.060393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.66552 -37.17332 -35.93228 -35.49028 -34.67943 -32.79242 -30.93959 -29.17244 -24.83015 -23.35966 -22.72512 -21.30554 -20.69675 -18.59227 -17.62700 -16.77194 -16.61201 -15.47979 -15.02157 -14.73701 -14.67437 -14.04630 -13.86958 -13.54336 -13.45392 -12.82718 -12.66192 -12.29626 -11.98341 -11.71249 -11.68867 -11.35089 -11.11045 -11.06673 -10.92089 -10.81192 -10.69453 -10.38286 -10.34825 -10.31808 -9.89306 -9.63311 -9.16568 -8.56803 -7.49616 -6.29598 -4.15397 1.24280 2.54390 2.78028 3.17238 3.25174 3.25656 3.65170 3.75702 3.85237 4.22021 4.40259 4.63722 4.75791 4.85065 4.93322 5.11454 5.20957 5.40215 5.43427 5.65028 5.78762 5.87351 5.92675 5.99024 6.09546 6.20941 6.45276 6.62232 6.98183 7.26710 7.43246 7.60587 7.68207 8.36363 8.95604 9.36886 10.72075 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.007443 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.491402 B = 3761.263486 C = 4173.301183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C 0.198 3.802 3 C -0.036 4.036 4 C -0.599 4.599 5 S 2.547 3.453 6 O -0.989 6.989 7 O -0.951 6.951 8 N -0.814 5.814 9 C -0.292 4.292 10 H 0.083 0.917 11 C 0.053 3.947 12 N -0.834 5.834 13 Si 0.907 3.093 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.267 1.267 17 C 0.114 3.886 18 C -0.136 4.136 19 C -0.229 4.229 20 C -0.141 4.141 21 C -0.136 4.136 22 H 0.137 0.863 23 H 0.140 0.860 24 H 0.268 0.732 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -1.411 -9.465 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.054 5.054 2 C -0.120 4.120 3 C -0.041 4.041 4 C -0.723 4.723 5 S 2.647 3.353 6 O -0.979 6.979 7 O -0.940 6.940 8 N -0.642 5.642 9 C -0.430 4.430 10 H 0.101 0.899 11 C -0.158 4.158 12 N -0.470 5.470 13 Si 0.732 3.268 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.192 1.192 17 C 0.006 3.994 18 C -0.175 4.175 19 C -0.270 4.270 20 C -0.179 4.179 21 C -0.175 4.175 22 H 0.156 0.844 23 H 0.158 0.842 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.138 0.862 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.379 -2.025 -9.390 11.531 hybrid contribution 0.872 1.233 0.244 1.530 sum 7.252 -0.792 -9.146 11.699 Atomic orbital electron populations 1.81207 1.11725 1.07315 1.05156 1.27835 0.93613 0.94531 0.96036 1.17577 0.81763 1.08387 0.96382 1.30415 1.15969 1.10859 1.15095 1.08330 0.76194 0.74201 0.76526 1.93417 1.87312 1.34477 1.82661 1.93504 1.40525 1.74114 1.85847 1.52027 1.47463 1.20406 1.44293 1.18915 1.46899 0.82286 0.94931 0.89924 1.25621 0.93951 0.98412 0.97800 1.70133 1.40716 1.32242 1.03924 0.86289 0.79127 0.83171 0.78182 1.19950 1.20553 1.19160 1.21049 0.84401 0.94145 0.99854 1.22965 1.01094 1.03390 0.90065 1.23474 0.96127 1.03333 1.04020 1.23365 1.02188 0.91360 1.00975 1.23230 1.02025 0.99367 0.92880 0.84438 0.84219 0.92139 0.87184 0.87126 0.90815 0.90423 0.89322 0.86224 0.87369 0.87621 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -7.94 18.47 42.15 0.78 -7.16 16 2 C 0.20 3.65 12.73 -20.76 -0.26 3.39 16 3 C -0.04 -0.52 2.37 -157.30 -0.37 -0.89 16 4 C -0.60 -9.33 6.33 37.16 0.24 -9.09 16 5 S 2.55 58.02 4.60 -107.50 -0.49 57.52 16 6 O -0.99 -24.38 16.81 -57.54 -0.97 -25.34 16 7 O -0.95 -25.52 15.90 -57.54 -0.91 -26.44 16 8 N -0.81 -19.34 2.95 -53.43 -0.16 -19.50 16 9 C -0.29 -7.34 8.15 -15.06 -0.12 -7.46 16 10 H 0.08 1.97 7.86 -52.48 -0.41 1.56 16 11 C 0.05 1.35 3.19 -17.43 -0.06 1.29 16 12 N -0.83 -22.26 11.38 55.49 0.63 -21.63 16 13 Si 0.91 19.53 29.51 -169.99 -5.02 14.51 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 C 0.11 2.50 5.73 -67.93 -0.39 2.11 16 18 C -0.14 -2.82 8.26 -26.73 -0.22 -3.04 16 19 C -0.23 -4.07 10.38 -26.73 -0.28 -4.35 16 20 C -0.14 -1.44 9.86 -26.70 -0.26 -1.70 16 21 C -0.14 -1.27 9.93 -26.70 -0.27 -1.54 16 22 H 0.14 1.93 8.14 -51.92 -0.42 1.51 16 23 H 0.14 1.73 7.90 -51.92 -0.41 1.32 16 24 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 25 H 0.11 2.44 7.40 -51.93 -0.38 2.05 16 26 H 0.11 2.50 5.16 -51.93 -0.27 2.23 16 27 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.12 1.00 8.05 -51.92 -0.42 0.58 16 31 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 299.57 15.07 4.51 4.51 Total: -1.00 -33.55 299.57 -7.61 -41.16 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -3.99 Total: 3.64 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -2.00 Total: -21.28 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 1.25 Total: -48.29 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -1.88 Total: -51.78 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 58.02 SS G_CDS: -0.49 Total: 57.52 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.55 -7.61 -41.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547327426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.001 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds