Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52997 * 115.55267 * 245.03888 * 3 2 1 5 5 S 1.81402 * 109.46873 * 34.41724 * 4 3 2 6 6 O 1.42097 * 110.54303 * 68.37811 * 5 4 3 7 7 O 1.42100 * 110.54629 * 291.62360 * 5 4 3 8 8 N 1.65606 * 104.45107 * 180.02562 * 5 4 3 9 9 C 1.36928 * 120.00222 * 89.99911 * 8 5 4 10 10 H 1.08005 * 120.00396 * 308.05400 * 9 8 5 11 11 C 1.38816 * 120.00037 * 128.04964 * 9 8 5 12 12 N 1.31614 * 119.99543 * 347.47969 * 11 9 8 13 13 Si 1.86797 * 119.99813 * 167.48174 * 11 9 8 14 14 H 1.48501 * 109.47586 * 90.00136 * 13 11 9 15 15 H 1.48506 * 109.47037 * 210.00020 * 13 11 9 16 16 H 1.48506 * 109.47457 * 329.99537 * 13 11 9 17 17 C 1.46504 * 119.99430 * 269.72993 * 8 5 4 18 18 C 1.52999 * 117.49438 * 181.47992 * 17 8 5 19 19 C 1.52997 * 60.00091 * 252.50994 * 18 17 8 20 20 C 1.52999 * 117.49847 * 30.71525 * 3 2 1 21 21 C 1.53000 * 117.49709 * 99.37228 * 3 2 1 22 22 H 1.09000 * 109.46963 * 274.42350 * 4 3 2 23 23 H 1.09000 * 109.47413 * 154.41783 * 4 3 2 24 24 H 0.97002 * 119.99471 * 175.37403 * 12 11 9 25 25 H 1.08992 * 115.55248 * 327.17990 * 17 8 5 26 26 H 1.09003 * 117.50067 * 359.97438 * 18 17 8 27 27 H 1.08999 * 117.50101 * 145.01952 * 18 17 8 28 28 H 1.09005 * 117.49457 * 252.51413 * 19 18 17 29 29 H 1.08995 * 117.52043 * 107.48193 * 19 18 17 30 30 H 1.09009 * 117.49285 * 215.00323 * 20 3 2 31 31 H 1.08994 * 117.50099 * 0.02562 * 20 3 2 32 32 H 1.09003 * 117.50143 * 359.97169 * 21 3 2 33 33 H 1.09000 * 117.49762 * 144.97299 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2677 0.5835 1.2514 5 16 2.2557 0.1936 2.7056 6 8 2.2879 -1.2010 2.9761 7 8 1.0253 0.9032 2.6617 8 7 3.0744 0.8752 3.9735 9 6 2.8075 2.1653 4.3467 10 1 2.8263 2.9553 3.6106 11 6 2.5126 2.4578 5.6713 12 7 2.2467 1.4846 6.5166 13 14 2.4931 4.2325 6.2538 14 1 1.1286 4.7939 6.0855 15 1 2.8775 4.2872 7.6872 16 1 3.4578 5.0274 5.4521 17 6 4.0802 0.0957 4.6997 18 6 4.7772 0.7699 5.8831 19 6 5.5399 0.5374 4.5773 20 6 3.3149 -1.1658 -0.6932 21 6 3.3143 0.2220 -1.3390 22 1 3.3524 1.6651 1.1472 23 1 4.2608 0.1512 1.3734 24 1 2.1068 1.6828 7.4558 25 1 3.8825 -0.9735 4.7743 26 1 4.4878 1.7935 6.1212 27 1 5.0381 0.1442 6.7366 28 1 6.3026 -0.2413 4.5718 29 1 5.7520 1.4076 3.9563 30 1 4.2500 -1.5180 -0.2575 31 1 2.6901 -1.9334 -1.1496 32 1 2.6890 0.3666 -2.2201 33 1 4.2487 0.7831 -1.3285 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547327426.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = 5.457843 kcal Electronic energy + Delta-G solvation = -19281.370710 eV Core-core repulsion = 16243.252993 eV Total energy + Delta-G solvation = -3038.117717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.71010 -38.82198 -37.78310 -36.87470 -36.53411 -34.54230 -32.73639 -30.36861 -26.68696 -24.55823 -23.42375 -22.79380 -22.39261 -20.35221 -19.05867 -18.38320 -18.34141 -16.97902 -16.51098 -16.40634 -16.09575 -15.47124 -15.31779 -15.02670 -14.88909 -14.16789 -14.02241 -13.93783 -13.51959 -13.21491 -13.14300 -12.84023 -12.73868 -12.68482 -12.45997 -12.34811 -12.19391 -12.04295 -11.93502 -11.56187 -11.36026 -10.95287 -10.77461 -10.36647 -9.23831 -8.15617 -6.07263 -0.41544 1.32068 1.42424 1.45287 1.48552 1.57264 2.13757 2.48957 2.57852 2.78845 3.01404 3.13700 3.40429 3.56424 3.58007 3.69623 3.93703 4.36706 4.43475 4.55085 4.56792 4.63513 4.76858 4.81309 4.94353 5.02375 5.09762 5.24438 5.40697 5.54240 5.76949 5.94762 6.26725 6.52831 7.10680 7.51710 8.85772 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024631 B = 0.007443 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.491402 B = 3761.263486 C = 4173.301183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.212 3.788 3 C -0.091 4.091 4 C -0.553 4.553 5 S 2.529 3.471 6 O -1.024 7.024 7 O -1.011 7.011 8 N -0.827 5.827 9 C -0.308 4.308 10 H 0.090 0.910 11 C 0.009 3.991 12 N -0.878 5.878 13 Si 0.962 3.038 14 H -0.289 1.289 15 H -0.277 1.277 16 H -0.245 1.245 17 C 0.080 3.920 18 C -0.152 4.152 19 C -0.178 4.178 20 C -0.129 4.129 21 C -0.094 4.094 22 H 0.160 0.840 23 H 0.186 0.814 24 H 0.266 0.734 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.148 0.852 31 H 0.113 0.887 32 H 0.118 0.882 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.873 -0.844 -12.068 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.106 4.106 3 C -0.097 4.097 4 C -0.685 4.685 5 S 2.637 3.363 6 O -1.014 7.014 7 O -1.000 7.000 8 N -0.655 5.655 9 C -0.445 4.445 10 H 0.108 0.892 11 C -0.198 4.198 12 N -0.516 5.516 13 Si 0.786 3.214 14 H -0.215 1.215 15 H -0.202 1.202 16 H -0.169 1.169 17 C -0.028 4.028 18 C -0.192 4.192 19 C -0.218 4.218 20 C -0.167 4.167 21 C -0.133 4.133 22 H 0.177 0.823 23 H 0.203 0.797 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.166 0.834 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.132 -1.453 -11.904 15.699 hybrid contribution -0.251 0.952 0.876 1.318 sum 9.881 -0.501 -11.027 14.816 Atomic orbital electron populations 1.81193 1.13983 1.09884 1.07296 1.28829 0.94855 0.92648 0.94232 1.18071 0.79360 1.13743 0.98518 1.29915 1.15518 1.12886 1.10168 1.08032 0.76370 0.73215 0.78673 1.93370 1.87927 1.35709 1.84379 1.93442 1.44555 1.74641 1.87407 1.52055 1.48152 1.19936 1.45372 1.19217 1.46772 0.83270 0.95195 0.89213 1.26363 0.93655 1.01683 0.98097 1.70247 1.43157 1.34138 1.04009 0.85442 0.78568 0.79262 0.78169 1.21509 1.20162 1.16856 1.21115 0.86718 0.93355 1.01636 1.22905 1.02664 1.02238 0.91347 1.23529 0.93649 1.03972 1.00665 1.23726 1.02224 0.91525 0.99177 1.23563 1.02030 0.98310 0.89435 0.82251 0.79659 0.92466 0.88810 0.89192 0.90347 0.86751 0.87935 0.83424 0.86859 0.86372 0.82837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.34 18.47 20.01 0.37 -18.97 16 2 C 0.21 7.68 12.73 89.44 1.14 8.81 16 3 C -0.09 -2.28 2.37 -53.99 -0.13 -2.40 16 4 C -0.55 -15.01 6.33 71.98 0.46 -14.55 16 5 S 2.53 115.61 4.60 -56.49 -0.26 115.35 16 6 O -1.02 -51.55 16.81 -127.65 -2.15 -53.69 16 7 O -1.01 -56.50 15.90 -127.65 -2.03 -58.53 16 8 N -0.83 -39.35 2.95 -322.94 -0.95 -40.31 16 9 C -0.31 -15.58 8.15 84.04 0.68 -14.90 16 10 H 0.09 4.26 7.86 -2.91 -0.02 4.24 16 11 C 0.01 0.45 3.19 84.86 0.27 0.72 16 12 N -0.88 -48.82 11.38 21.65 0.25 -48.58 16 13 Si 0.96 40.63 29.51 68.60 2.02 42.65 16 14 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 15 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 17 C 0.08 3.45 5.73 44.99 0.26 3.71 16 18 C -0.15 -6.24 8.26 30.59 0.25 -5.98 16 19 C -0.18 -5.73 10.38 30.59 0.32 -5.41 16 20 C -0.13 -1.95 9.86 30.62 0.30 -1.64 16 21 C -0.09 -1.18 9.93 30.62 0.30 -0.87 16 22 H 0.16 3.74 8.14 -2.39 -0.02 3.72 16 23 H 0.19 3.40 7.90 -2.39 -0.02 3.38 16 24 H 0.27 14.01 8.32 -92.71 -0.77 13.24 16 25 H 0.09 4.25 7.40 -2.39 -0.02 4.23 16 26 H 0.09 4.08 5.16 -2.39 -0.01 4.07 16 27 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 29 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.15 1.45 8.05 -2.38 -0.02 1.43 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -81.24 299.57 2.23 -79.01 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.12 Total: 15.58 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.86 Total: -32.52 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -0.34 Total: -107.85 kcal Atomic # 8 Polarization: -108.04 SS G_CDS: -4.18 Total: -112.22 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.02 Total: 42.65 kcal Atomic # 16 Polarization: 115.61 SS G_CDS: -0.26 Total: 115.35 kcal Total: -81.24 2.23 -79.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547327426.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.463 kcal (2) G-P(sol) polarization free energy of solvation -81.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds