Wall clock time and date at job start Mon Mar 30 2020 01:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.50706 * 109.46783 * 239.99845 * 2 1 3 5 5 H 1.07996 * 119.99928 * 239.99923 * 4 2 1 6 6 C 1.37880 * 119.99611 * 60.00217 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00025 * 8 6 4 11 11 H 1.48498 * 109.46942 * 239.99938 * 8 6 4 12 12 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 13 13 S 1.81404 * 109.46946 * 299.99763 * 12 2 1 14 14 C 1.76192 * 102.99967 * 180.02562 * 13 12 2 15 15 C 1.39006 * 120.07421 * 359.72391 * 14 13 12 16 16 C 1.38070 * 119.94347 * 179.72254 * 15 14 13 17 17 C 1.38306 * 120.09685 * 0.55220 * 16 15 14 18 18 C 1.38396 * 120.14365 * 359.72441 * 17 16 15 19 19 Cl 1.73597 * 119.97495 * 180.02562 * 18 17 16 20 20 C 1.38218 * 120.05477 * 359.97438 * 18 17 16 21 21 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 22 22 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 23 23 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 26 26 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 27 27 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 28 28 H 1.09002 * 109.47398 * 59.99826 * 12 2 1 29 29 H 1.09001 * 109.47194 * 180.02562 * 12 2 1 30 30 H 1.07997 * 120.02790 * 359.97438 * 15 14 13 31 31 H 1.08008 * 119.95264 * 180.25427 * 16 15 14 32 32 H 1.07997 * 119.92828 * 179.74105 * 17 16 15 33 33 H 1.08003 * 120.04707 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1471 -2.2864 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1470 -0.1858 -4.8161 12 6 2.0401 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 6 2.1132 -0.8235 4.0451 15 6 2.8948 -1.9382 3.7641 16 6 3.4293 -2.6831 4.7964 17 6 3.1789 -2.3285 6.1096 18 6 2.3965 -1.2228 6.3938 19 17 2.0855 -0.7813 8.0436 20 6 1.8635 -0.4691 5.3651 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 0.7080 1.1609 -3.4844 28 1 1.6767 -1.7490 1.2492 29 1 3.1301 -0.7209 1.2494 30 1 3.0871 -2.2189 2.7391 31 1 4.0400 -3.5468 4.5782 32 1 3.5949 -2.9156 6.9149 33 1 1.2533 0.3939 5.5870 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564350452.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:35 Heat of formation + Delta-G solvation = -8.788015 kcal Electronic energy + Delta-G solvation = -15797.345864 eV Core-core repulsion = 13167.026813 eV Total energy + Delta-G solvation = -2630.319051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05063 -37.90403 -37.44574 -33.57042 -32.10857 -31.82424 -28.04141 -27.59676 -27.16595 -23.94828 -23.57162 -20.90919 -18.94387 -17.95678 -17.18136 -16.75873 -16.38477 -15.91497 -15.44423 -15.20494 -14.70687 -14.54506 -14.44362 -13.99194 -13.32243 -13.22540 -12.87484 -12.82734 -12.58486 -12.57719 -12.38159 -12.25432 -12.07591 -11.87822 -11.47733 -11.38585 -11.21663 -10.68033 -10.48982 -10.38913 -9.84254 -8.33844 -8.01708 -6.19470 0.06250 0.19804 0.56705 1.15052 1.42764 1.46527 1.55306 1.61778 2.46161 2.54376 3.21989 3.82485 4.03839 4.11921 4.23590 4.27423 4.38199 4.51114 4.70522 4.76655 4.90894 5.03475 5.10423 5.17712 5.20012 5.21647 5.32479 5.43836 5.63464 5.66397 5.70801 6.07726 6.18285 6.39382 6.85646 7.48757 8.97573 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.042933 B = 0.003999 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.025405 B = 7000.929618 C = 7461.888651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.073 3.927 3 C -0.123 4.123 4 C -0.523 4.523 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.903 5.903 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.066 4.066 13 S -0.127 6.127 14 C -0.085 4.085 15 C -0.145 4.145 16 C -0.081 4.081 17 C -0.121 4.121 18 C -0.022 4.022 19 Cl -0.064 7.064 20 C -0.110 4.110 21 H 0.031 0.969 22 H 0.060 0.940 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.031 0.969 27 H 0.259 0.741 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 -5.488 16.097 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.071 3.929 3 C -0.181 4.181 4 C -0.563 4.563 5 H 0.073 0.927 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.776 3.224 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.214 4.214 13 S 0.120 5.880 14 C -0.199 4.199 15 C -0.169 4.169 16 C -0.101 4.101 17 C -0.143 4.143 18 C -0.051 4.051 19 Cl -0.035 7.035 20 C -0.135 4.135 21 H 0.050 0.950 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.040 -4.296 16.032 16.874 hybrid contribution 0.853 -1.206 -1.047 1.810 sum 3.892 -5.502 14.986 16.431 Atomic orbital electron populations 1.21732 0.97519 0.98853 1.00036 1.18001 0.92883 0.92557 0.89465 1.21731 0.98160 0.98216 1.00037 1.21345 1.31710 1.12246 0.90958 0.92740 1.25544 0.95127 0.95560 1.01271 1.69954 1.37113 1.23577 1.23563 0.85642 0.78048 0.78753 0.79973 1.19275 1.20991 1.20982 1.23869 1.02567 1.01324 0.93629 1.85642 1.65165 1.39451 0.97720 1.22087 1.01379 0.99369 0.97045 1.21556 0.98932 0.95303 1.01125 1.21362 0.98125 0.99569 0.91014 1.21345 0.98677 0.96091 0.98154 1.20883 1.01140 0.97777 0.85267 1.98363 1.94803 1.92641 1.17669 1.20666 1.02041 1.01099 0.89695 0.94989 0.92139 0.95698 0.95694 0.92148 0.94978 0.93095 0.90532 0.90541 0.85286 0.81875 0.82253 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.01 71.98 0.58 -5.21 16 2 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 3 C -0.12 -5.79 8.01 71.98 0.58 -5.21 16 4 C -0.52 -26.79 8.01 25.60 0.21 -26.58 16 5 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 6 C 0.02 1.28 5.15 84.66 0.44 1.72 16 7 N -0.90 -48.84 9.35 21.45 0.20 -48.64 16 8 Si 0.95 41.65 29.54 68.60 2.03 43.67 16 9 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 C -0.07 -2.57 3.27 71.98 0.24 -2.33 16 13 S -0.13 -4.48 18.98 -56.49 -1.07 -5.55 16 14 C -0.09 -2.57 6.11 22.62 0.14 -2.43 16 15 C -0.14 -3.87 9.36 22.41 0.21 -3.66 16 16 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 17 C -0.12 -2.37 9.83 22.32 0.22 -2.15 16 18 C -0.02 -0.51 6.32 22.30 0.14 -0.37 16 19 Cl -0.06 -1.29 28.95 -2.72 -0.08 -1.37 16 20 C -0.11 -2.98 9.57 22.43 0.21 -2.76 16 21 H 0.03 1.37 6.91 -2.39 -0.02 1.36 16 22 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 23 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 26 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 27 H 0.26 13.49 8.31 -92.71 -0.77 12.72 16 28 H 0.08 2.90 7.74 -2.39 -0.02 2.89 16 29 H 0.08 2.90 7.76 -2.39 -0.02 2.88 16 30 H 0.13 3.50 5.88 -2.91 -0.02 3.49 16 31 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -54.58 296.20 5.33 -49.25 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.10 Total: 9.72 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 3.15 Total: -47.08 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.20 Total: -48.64 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -1.07 Total: -5.55 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -54.58 5.33 -49.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564350452.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.467 kcal (2) G-P(sol) polarization free energy of solvation -54.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds