Wall clock time and date at job start Mon Mar 30 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48498 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47033 * 300.00036 * 3 2 1 6 6 H 1.48494 * 109.46848 * 60.00260 * 3 2 1 7 7 C 1.37881 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00168 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00196 * 179.97438 * 10 9 7 12 12 C 1.50692 * 109.46859 * 178.74828 * 11 10 9 13 13 C 1.38256 * 120.00010 * 99.55523 * 12 11 10 14 14 C 1.38217 * 120.00338 * 179.97438 * 13 12 11 15 15 C 1.38264 * 119.99462 * 359.80746 * 14 13 12 16 16 C 1.38212 * 120.00033 * 0.41983 * 15 14 13 17 17 C 1.38216 * 120.00046 * 279.52227 * 12 11 10 18 18 S 1.76193 * 120.00037 * 0.02562 * 17 12 11 19 19 N 1.65607 * 107.21923 * 295.37015 * 18 17 12 20 20 O 1.42105 * 106.40544 * 48.90867 * 18 17 12 21 21 O 1.42101 * 106.40315 * 181.83417 * 18 17 12 22 22 H 0.96997 * 119.99618 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47194 * 60.00094 * 9 7 2 24 24 H 1.09002 * 109.47418 * 300.00391 * 9 7 2 25 25 H 1.00903 * 110.99672 * 56.04360 * 10 9 7 26 26 H 1.08995 * 109.46620 * 58.74632 * 11 10 9 27 27 H 1.08996 * 109.46892 * 298.74979 * 11 10 9 28 28 H 1.08002 * 120.00376 * 359.97438 * 13 12 11 29 29 H 1.08000 * 120.00565 * 180.02562 * 14 13 12 30 30 H 1.07999 * 119.99670 * 180.23799 * 15 14 13 31 31 H 1.08002 * 119.99940 * 179.81112 * 16 15 14 32 32 H 0.96998 * 120.00230 * 144.76532 * 19 18 17 33 33 H 0.96999 * 119.99575 * 324.77498 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9072 0.0001 12 6 2.5144 -6.0258 -0.0310 13 6 2.8528 -6.6841 1.1367 14 6 3.7781 -7.7105 1.1083 15 6 4.3622 -8.0816 -0.0888 16 6 4.0273 -7.4204 -1.2554 17 6 3.1011 -6.3942 -1.2269 18 16 2.6697 -5.5555 -2.7151 19 7 1.0701 -5.8687 -3.0083 20 8 2.7613 -4.1656 -2.4335 21 8 3.3998 -6.1870 -3.7579 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6246 -2.5571 0.8896 25 1 2.8404 -3.5487 0.7808 26 1 0.8631 -4.9725 -0.8782 27 1 0.8978 -4.9906 0.9013 28 1 2.3943 -6.3964 2.0713 29 1 4.0422 -8.2250 2.0203 30 1 5.0823 -8.8861 -0.1117 31 1 4.4858 -7.7082 -2.1899 32 1 0.5073 -5.1864 -3.4065 33 1 0.6961 -6.7345 -2.7818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569716181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:57 Heat of formation + Delta-G solvation = -37.191532 kcal Electronic energy + Delta-G solvation = -18787.964136 eV Core-core repulsion = 15747.997003 eV Total energy + Delta-G solvation = -3039.967133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.40791 -36.79762 -35.37927 -35.17794 -33.06198 -32.60657 -31.26750 -30.94647 -27.01806 -24.43432 -23.21049 -21.61721 -21.13370 -19.20339 -18.00110 -17.00474 -16.60247 -16.38630 -15.73437 -15.33954 -14.66314 -14.42125 -14.30790 -14.07533 -13.65813 -13.19510 -12.56461 -12.50695 -12.03322 -11.81774 -11.57439 -11.47853 -11.35906 -11.25583 -11.06005 -10.64961 -10.62616 -10.50124 -10.06960 -9.83665 -9.37388 -9.11433 -8.85364 -8.38561 -7.12957 -5.94371 -3.93323 0.67613 0.94591 1.26622 3.32063 3.37760 3.44759 3.51494 3.61241 4.05683 4.51998 4.63664 4.79795 4.81714 5.02042 5.19264 5.42220 5.44699 5.51021 5.65659 5.75042 5.88526 6.02239 6.10491 6.17507 6.28551 6.38306 6.81657 7.23075 7.27754 7.47861 7.88685 8.20085 8.48691 8.67912 9.15486 9.70074 11.17266 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.005737 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.895266 B = 4879.488601 C = 5442.677358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.052 3.948 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.500 4.500 8 H 0.064 0.936 9 C 0.200 3.800 10 N -0.654 5.654 11 C 0.063 3.937 12 C 0.032 3.968 13 C -0.140 4.140 14 C -0.066 4.066 15 C -0.151 4.151 16 C -0.027 4.027 17 C -0.658 4.658 18 S 2.681 3.319 19 N -1.251 6.251 20 O -0.889 6.889 21 O -0.982 6.982 22 H 0.259 0.741 23 H 0.032 0.968 24 H -0.018 1.018 25 H 0.326 0.674 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.422 0.578 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.136 -18.079 -0.566 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.284 5.284 11 C -0.067 4.067 12 C 0.031 3.969 13 C -0.160 4.160 14 C -0.085 4.085 15 C -0.170 4.170 16 C -0.046 4.046 17 C -0.744 4.744 18 S 2.767 3.233 19 N -0.924 5.924 20 O -0.878 6.878 21 O -0.972 6.972 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.000 1.000 25 H 0.143 0.857 26 H 0.099 0.901 27 H 0.056 0.944 28 H 0.147 0.853 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.158 0.842 32 H 0.252 0.748 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.821 -17.351 -1.739 17.852 hybrid contribution -0.461 0.245 1.606 1.689 sum 3.360 -17.106 -0.133 17.434 Atomic orbital electron populations 1.69973 1.06014 1.26452 1.51886 1.24967 0.94875 0.99258 0.95689 0.86435 0.80172 0.83438 0.77317 1.19667 1.21064 1.21307 1.21209 0.93697 0.90015 1.48932 0.91802 1.19535 0.90406 0.87161 0.95485 1.60791 1.20322 0.98994 1.48296 1.21327 0.93589 0.89925 1.01891 1.19793 0.92923 0.92616 0.91618 1.21247 0.99379 0.97194 0.98145 1.21408 0.93948 0.95142 0.97973 1.21219 1.01623 1.01346 0.92816 1.20992 0.92860 0.91364 0.99364 1.30723 1.11028 1.13246 1.19416 1.02488 0.72658 0.74685 0.73473 1.53335 1.31966 1.25658 1.81428 1.93917 1.83760 1.26796 1.83315 1.93550 1.70849 1.78610 1.54183 0.93168 0.95012 1.00022 0.85726 0.90073 0.94368 0.85291 0.85565 0.85441 0.84179 0.74777 0.76436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.50 -14.61 9.32 -34.44 -0.32 -14.93 16 8 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.20 5.31 5.44 -4.98 -0.03 5.28 16 10 N -0.65 -14.26 4.46 -116.34 -0.52 -14.78 16 11 C 0.06 1.07 4.88 -4.98 -0.02 1.04 16 12 C 0.03 0.48 5.40 -104.63 -0.56 -0.09 16 13 C -0.14 -1.75 9.67 -39.58 -0.38 -2.13 16 14 C -0.07 -0.70 10.05 -39.58 -0.40 -1.10 16 15 C -0.15 -1.61 10.05 -39.58 -0.40 -2.01 16 16 C -0.03 -0.33 9.55 -39.58 -0.38 -0.71 16 17 C -0.66 -9.43 5.91 -39.58 -0.23 -9.67 16 18 S 2.68 41.10 5.50 -107.50 -0.59 40.50 16 19 N -1.25 -13.97 8.11 60.35 0.49 -13.48 16 20 O -0.89 -18.19 15.09 -57.17 -0.86 -19.05 16 21 O -0.98 -16.72 16.97 -57.17 -0.97 -17.69 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 24 H -0.02 -0.49 8.14 -51.93 -0.42 -0.91 16 25 H 0.33 6.88 8.73 -39.29 -0.34 6.53 16 26 H 0.08 1.31 5.93 -51.93 -0.31 1.00 16 27 H 0.04 0.62 8.01 -51.93 -0.42 0.20 16 28 H 0.13 1.41 8.04 -52.49 -0.42 0.99 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.14 1.59 7.34 -52.49 -0.38 1.21 16 32 H 0.42 4.40 8.96 -34.48 -0.31 4.09 16 33 H 0.41 3.30 8.96 -34.47 -0.31 2.99 16 LS Contribution 294.47 15.07 4.44 4.44 Total: -1.00 -36.65 294.47 -8.85 -45.50 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.73 Total: 6.64 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -2.82 Total: -22.88 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.71 Total: -54.84 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.83 Total: -36.74 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 41.10 SS G_CDS: -0.59 Total: 40.50 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -36.65 -8.85 -45.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569716181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.307 kcal (2) G-P(sol) polarization free energy of solvation -36.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds