Wall clock time and date at job start Mon Mar 30 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48498 * 109.46983 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47033 * 300.00036 * 3 2 1 6 6 H 1.48494 * 109.46848 * 60.00260 * 3 2 1 7 7 C 1.37881 * 119.99608 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00168 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47162 * 180.02562 * 9 7 2 11 11 C 1.46904 * 111.00196 * 179.97438 * 10 9 7 12 12 C 1.50692 * 109.46859 * 178.74828 * 11 10 9 13 13 C 1.38256 * 120.00010 * 99.55523 * 12 11 10 14 14 C 1.38217 * 120.00338 * 179.97438 * 13 12 11 15 15 C 1.38264 * 119.99462 * 359.80746 * 14 13 12 16 16 C 1.38212 * 120.00033 * 0.41983 * 15 14 13 17 17 C 1.38216 * 120.00046 * 279.52227 * 12 11 10 18 18 S 1.76193 * 120.00037 * 0.02562 * 17 12 11 19 19 N 1.65607 * 107.21923 * 295.37015 * 18 17 12 20 20 O 1.42105 * 106.40544 * 48.90867 * 18 17 12 21 21 O 1.42101 * 106.40315 * 181.83417 * 18 17 12 22 22 H 0.96997 * 119.99618 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47194 * 60.00094 * 9 7 2 24 24 H 1.09002 * 109.47418 * 300.00391 * 9 7 2 25 25 H 1.00903 * 110.99672 * 56.04360 * 10 9 7 26 26 H 1.08995 * 109.46620 * 58.74632 * 11 10 9 27 27 H 1.08996 * 109.46892 * 298.74979 * 11 10 9 28 28 H 1.08002 * 120.00376 * 359.97438 * 13 12 11 29 29 H 1.08000 * 120.00565 * 180.02562 * 14 13 12 30 30 H 1.07999 * 119.99670 * 180.23799 * 15 14 13 31 31 H 1.08002 * 119.99940 * 179.81112 * 16 15 14 32 32 H 0.96998 * 120.00230 * 144.76532 * 19 18 17 33 33 H 0.96999 * 119.99575 * 324.77498 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9072 0.0001 12 6 2.5144 -6.0258 -0.0310 13 6 2.8528 -6.6841 1.1367 14 6 3.7781 -7.7105 1.1083 15 6 4.3622 -8.0816 -0.0888 16 6 4.0273 -7.4204 -1.2554 17 6 3.1011 -6.3942 -1.2269 18 16 2.6697 -5.5555 -2.7151 19 7 1.0701 -5.8687 -3.0083 20 8 2.7613 -4.1656 -2.4335 21 8 3.3998 -6.1870 -3.7579 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6246 -2.5571 0.8896 25 1 2.8404 -3.5487 0.7808 26 1 0.8631 -4.9725 -0.8782 27 1 0.8978 -4.9906 0.9013 28 1 2.3943 -6.3964 2.0713 29 1 4.0422 -8.2250 2.0203 30 1 5.0823 -8.8861 -0.1117 31 1 4.4858 -7.7082 -2.1899 32 1 0.5073 -5.1864 -3.4065 33 1 0.6961 -6.7345 -2.7818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569716181.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:57 Heat of formation + Delta-G solvation = -67.173042 kcal Electronic energy + Delta-G solvation = -18789.264232 eV Core-core repulsion = 15747.997003 eV Total energy + Delta-G solvation = -3041.267229 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.42004 -38.13401 -36.92224 -36.62968 -34.71428 -33.99574 -32.41276 -32.18607 -28.84136 -26.03551 -24.19138 -23.47292 -22.41851 -20.36645 -19.12908 -18.49567 -18.13539 -17.58885 -17.06399 -16.61680 -16.34054 -15.88344 -15.44774 -15.35087 -15.21281 -14.63077 -14.00921 -13.79729 -13.39885 -13.24715 -13.08079 -12.96772 -12.83695 -12.66976 -12.64993 -12.59392 -12.20130 -11.93554 -11.66526 -11.24880 -11.06669 -10.61236 -10.32946 -9.88648 -8.89018 -8.17764 -6.25598 -0.43435 -0.12099 0.30259 1.40484 1.42601 1.56226 2.29077 2.43296 2.57774 2.88149 3.15447 3.55029 3.66676 3.77247 4.07215 4.09661 4.26875 4.44026 4.54116 4.59581 4.79298 4.95868 5.12286 5.18815 5.28146 5.32958 5.38320 5.41740 5.67330 5.90351 6.09519 6.38860 6.54299 6.77658 6.95120 7.43351 8.93972 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023349 B = 0.005737 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.895266 B = 4879.488601 C = 5442.677358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.217 3.783 10 N -0.658 5.658 11 C 0.060 3.940 12 C 0.012 3.988 13 C -0.144 4.144 14 C -0.057 4.057 15 C -0.140 4.140 16 C -0.039 4.039 17 C -0.664 4.664 18 S 2.695 3.305 19 N -1.237 6.237 20 O -0.949 6.949 21 O -1.005 7.005 22 H 0.264 0.736 23 H 0.004 0.996 24 H -0.037 1.037 25 H 0.328 0.672 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.143 0.857 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.149 0.851 32 H 0.426 0.574 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -19.689 0.537 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.075 0.925 9 C 0.089 3.911 10 N -0.288 5.288 11 C -0.069 4.069 12 C 0.010 3.990 13 C -0.164 4.164 14 C -0.075 4.075 15 C -0.159 4.159 16 C -0.058 4.058 17 C -0.753 4.753 18 S 2.784 3.216 19 N -0.915 5.915 20 O -0.938 6.938 21 O -0.994 6.994 22 H 0.073 0.927 23 H 0.022 0.978 24 H -0.019 1.019 25 H 0.145 0.855 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.161 0.839 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.258 0.742 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.996 -18.984 -0.660 19.641 hybrid contribution -0.829 0.565 1.298 1.641 sum 4.167 -18.419 0.638 18.895 Atomic orbital electron populations 1.70080 1.07486 1.27684 1.52254 1.25868 0.95835 1.03024 0.94979 0.85353 0.78807 0.78725 0.77799 1.19248 1.20489 1.19923 1.21542 0.93597 0.91698 1.49463 0.92528 1.19135 0.90375 0.88412 0.93140 1.60569 1.19834 0.99875 1.48566 1.21361 0.94478 0.88602 1.02445 1.19538 0.93659 0.92872 0.92888 1.21498 0.99741 0.97438 0.97683 1.21860 0.92210 0.93904 0.99506 1.21683 1.01179 1.01205 0.91839 1.21255 0.92522 0.91146 1.00898 1.30362 1.12457 1.14312 1.18188 1.01574 0.73089 0.73414 0.73482 1.52926 1.30648 1.26718 1.81173 1.93851 1.85013 1.30602 1.84353 1.93514 1.71944 1.78522 1.55469 0.92739 0.97782 1.01922 0.85481 0.89874 0.93421 0.83947 0.81709 0.81794 0.83366 0.74196 0.74455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 46.33 29.54 68.60 2.03 48.35 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.52 -31.51 9.32 25.60 0.24 -31.27 16 8 H 0.06 3.40 7.81 -2.91 -0.02 3.37 16 9 C 0.22 11.97 5.44 85.56 0.47 12.44 16 10 N -0.66 -29.61 4.46 -522.00 -2.33 -31.94 16 11 C 0.06 2.09 4.88 85.55 0.42 2.51 16 12 C 0.01 0.35 5.40 -19.87 -0.11 0.24 16 13 C -0.14 -3.22 9.67 22.27 0.22 -3.01 16 14 C -0.06 -0.95 10.05 22.27 0.22 -0.73 16 15 C -0.14 -2.41 10.05 22.27 0.22 -2.19 16 16 C -0.04 -0.89 9.55 22.27 0.21 -0.68 16 17 C -0.66 -18.50 5.91 22.27 0.13 -18.37 16 18 S 2.70 84.33 5.50 -56.49 -0.31 84.01 16 19 N -1.24 -27.93 8.11 37.02 0.30 -27.63 16 20 O -0.95 -40.59 15.09 -128.00 -1.93 -42.52 16 21 O -1.01 -34.51 16.97 -128.00 -2.17 -36.68 16 22 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 23 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 24 H -0.04 -2.11 8.14 -2.39 -0.02 -2.13 16 25 H 0.33 14.19 8.73 -89.69 -0.78 13.41 16 26 H 0.08 2.77 5.93 -2.39 -0.01 2.75 16 27 H 0.05 1.54 8.01 -2.39 -0.02 1.53 16 28 H 0.14 2.73 8.04 -2.91 -0.02 2.71 16 29 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 30 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.15 3.10 7.34 -2.91 -0.02 3.07 16 32 H 0.43 9.18 8.96 -96.74 -0.87 8.31 16 33 H 0.43 6.62 8.96 -96.75 -0.87 5.76 16 Total: -1.00 -80.61 294.47 -3.00 -83.61 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -1.35 Total: 20.59 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 2.48 Total: -40.56 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -1.74 Total: -116.79 kcal Atomic # 8 Polarization: -75.10 SS G_CDS: -4.10 Total: -79.21 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Atomic # 16 Polarization: 84.33 SS G_CDS: -0.31 Total: 84.01 kcal Total: -80.61 -3.00 -83.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569716181.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.433 kcal (2) G-P(sol) polarization free energy of solvation -80.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds