Wall clock time and date at job start Mon Mar 30 2020 00:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.46899 * 2 1 4 4 C 1.34781 * 117.00107 * 179.97438 * 3 2 1 5 5 O 1.21534 * 119.99542 * 359.97438 * 4 3 2 6 6 C 1.47372 * 120.00384 * 180.02562 * 4 3 2 7 7 C 1.39892 * 120.05022 * 359.97377 * 6 4 3 8 8 C 1.36555 * 120.11151 * 179.74644 * 7 6 4 9 9 C 1.39342 * 120.21468 * 0.55479 * 8 7 6 10 10 S 1.76198 * 119.94943 * 179.71771 * 9 8 7 11 11 C 1.76195 * 100.00161 * 7.03854 * 10 9 8 12 12 H 1.08009 * 119.99785 * 5.69519 * 11 10 9 13 13 C 1.38825 * 120.00489 * 185.69252 * 11 10 9 14 14 N 1.31546 * 119.99358 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00273 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47222 * 89.99880 * 15 13 11 17 17 H 1.48495 * 109.47363 * 210.00106 * 15 13 11 18 18 H 1.48509 * 109.47242 * 330.00414 * 15 13 11 19 19 C 1.39604 * 120.10167 * 359.45039 * 9 8 7 20 20 F 1.35103 * 120.05604 * 180.29576 * 19 9 8 21 21 C 1.37793 * 119.89114 * 0.26623 * 19 9 8 22 22 H 1.09001 * 109.47418 * 299.99744 * 1 2 3 23 23 H 1.08995 * 109.46930 * 60.00724 * 1 2 3 24 24 H 1.09006 * 109.46903 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47223 * 239.99593 * 2 1 3 26 26 H 1.09004 * 109.46966 * 119.99892 * 2 1 3 27 27 H 1.08005 * 119.94572 * 0.04818 * 7 6 4 28 28 H 1.07998 * 119.89156 * 180.27144 * 8 7 6 29 29 H 0.97002 * 119.99820 * 179.97438 * 14 13 11 30 30 H 1.08001 * 120.10753 * 179.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5456 0.0005 5 8 4.0905 0.5818 0.0015 6 6 3.9134 2.9074 0.0011 7 6 3.0623 4.0176 0.0006 8 6 3.5828 5.2800 0.0064 9 6 4.9633 5.4693 0.0012 10 16 5.6275 7.1013 0.0012 11 6 4.1486 8.0335 0.2212 12 1 3.2122 7.5261 0.4012 13 6 4.1869 9.4200 0.1633 14 7 5.3272 10.0378 -0.0564 15 14 2.6189 10.4081 0.3959 16 1 2.4400 10.7211 1.8365 17 1 2.7112 11.6724 -0.3776 18 1 1.4586 9.6164 -0.0863 19 6 5.8211 4.3678 0.0016 20 9 7.1594 4.5524 0.0026 21 6 5.3004 3.0920 0.0017 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.9915 3.8760 0.0005 28 1 2.9224 6.1345 0.0104 29 1 5.3540 11.0066 -0.0973 30 1 5.9607 2.2374 0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592361899.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:37 Heat of formation + Delta-G solvation = -115.940300 kcal Electronic energy + Delta-G solvation = -17387.328732 eV Core-core repulsion = 14188.193740 eV Total energy + Delta-G solvation = -3199.134992 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.21346 -40.23690 -37.99010 -36.31119 -33.02643 -31.94833 -30.84104 -30.02751 -26.14210 -24.78847 -22.84207 -22.10552 -20.78212 -18.49840 -17.92366 -16.75303 -16.43117 -16.22543 -15.57688 -15.31802 -15.22432 -15.00779 -14.07577 -13.82531 -13.47792 -13.24344 -12.90124 -12.77764 -12.15874 -12.08232 -11.79608 -11.70716 -11.39285 -11.34341 -11.23554 -10.69910 -10.51618 -10.34955 -9.98724 -9.80669 -9.05287 -8.94009 -8.42471 -6.87609 -6.74848 -4.46957 0.95660 1.77176 2.76417 2.78683 2.84434 3.00597 3.06866 3.13325 3.79562 4.09149 4.69682 4.75801 4.79772 4.82736 4.87804 5.01255 5.16012 5.26492 5.47774 5.57100 5.64701 5.82540 5.83344 6.05964 6.33569 6.54139 6.60393 6.65904 6.79033 7.20166 7.32833 7.90144 8.00204 8.72210 10.30853 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.004873 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.171533 B = 5744.051460 C = 6970.312904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.356 6.356 4 C 0.520 3.480 5 O -0.525 6.525 6 C -0.172 4.172 7 C -0.041 4.041 8 C -0.145 4.145 9 C -0.095 4.095 10 S 0.123 5.877 11 C -0.567 4.567 12 H 0.101 0.899 13 C 0.082 3.918 14 N -0.854 5.854 15 Si 0.930 3.070 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.265 1.265 19 C 0.055 3.945 20 F -0.136 7.136 21 C -0.059 4.059 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.151 0.849 29 H 0.279 0.721 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 -11.737 0.050 13.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.273 6.273 4 C 0.367 3.633 5 O -0.416 6.416 6 C -0.181 4.181 7 C -0.063 4.063 8 C -0.171 4.171 9 C -0.214 4.214 10 S 0.387 5.613 11 C -0.713 4.713 12 H 0.118 0.882 13 C -0.131 4.131 14 N -0.486 5.486 15 Si 0.754 3.246 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.189 1.189 19 C 0.027 3.973 20 F -0.115 7.115 21 C -0.081 4.081 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.149 0.851 28 H 0.168 0.832 29 H 0.089 0.911 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.779 -11.006 -0.090 12.431 hybrid contribution -1.850 0.010 0.220 1.863 sum -7.629 -10.996 0.130 13.384 Atomic orbital electron populations 1.21802 0.92809 1.02716 1.03602 1.22956 0.95146 0.80598 1.02420 1.86568 1.24321 1.31726 1.84683 1.21070 0.80079 0.89911 0.72243 1.90792 1.60347 1.42744 1.47723 1.18364 0.92752 0.89500 1.17445 1.20982 0.99485 0.91407 0.94462 1.21005 0.93679 0.97960 1.04491 1.23280 0.97133 1.01404 0.99631 1.83766 1.12800 0.88154 1.76590 1.23574 0.96085 0.93875 1.57808 0.88180 1.25193 0.98246 0.96888 0.92743 1.69944 1.25517 1.10730 1.42404 0.85961 0.80818 0.78852 0.78937 1.19589 1.20257 1.18896 1.16758 0.77100 0.92432 1.11043 1.91463 1.29589 1.95961 1.94494 1.20782 0.94235 0.95588 0.97524 0.91452 0.91445 0.90463 0.91411 0.91412 0.85116 0.83227 0.91065 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.68 6.20 37.16 0.23 0.91 16 3 O -0.36 -5.05 9.46 -40.71 -0.38 -5.43 16 4 C 0.52 8.59 7.89 34.45 0.27 8.86 16 5 O -0.52 -9.56 16.13 -19.29 -0.31 -9.88 16 6 C -0.17 -2.97 5.88 -104.93 -0.62 -3.59 16 7 C -0.04 -0.69 9.55 -39.57 -0.38 -1.07 16 8 C -0.15 -2.79 9.16 -39.78 -0.36 -3.15 16 9 C -0.10 -2.02 6.12 -38.66 -0.24 -2.25 16 10 S 0.12 2.97 21.26 -107.50 -2.29 0.69 16 11 C -0.57 -14.20 8.99 30.95 0.28 -13.92 16 12 H 0.10 2.35 4.97 -52.48 -0.26 2.08 16 13 C 0.08 2.04 5.49 -17.46 -0.10 1.95 16 14 N -0.85 -22.63 13.22 55.49 0.73 -21.89 16 15 Si 0.93 19.01 29.55 -169.99 -5.02 13.99 16 16 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 19 C 0.06 1.11 7.27 -39.23 -0.29 0.82 16 20 F -0.14 -2.76 16.76 2.25 0.04 -2.72 16 21 C -0.06 -1.07 9.57 -39.11 -0.37 -1.44 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.13 1.86 7.59 -52.48 -0.40 1.46 16 28 H 0.15 2.90 5.01 -52.49 -0.26 2.63 16 29 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.14 2.30 7.65 -52.49 -0.40 1.90 16 LS Contribution 288.32 15.07 4.34 4.34 Total: -1.00 -27.67 288.32 -6.65 -34.32 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -2.57 Total: 0.28 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -1.19 Total: -13.70 kcal Atomic # 7 Polarization: -22.63 SS G_CDS: 0.73 Total: -21.89 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.70 Total: -15.31 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.29 Total: 0.69 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.67 -6.65 -34.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592361899.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.618 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds