Wall clock time and date at job start Mon Mar 30 2020 00:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45196 * 109.46899 * 2 1 4 4 C 1.34781 * 117.00107 * 179.97438 * 3 2 1 5 5 O 1.21534 * 119.99542 * 359.97438 * 4 3 2 6 6 C 1.47372 * 120.00384 * 180.02562 * 4 3 2 7 7 C 1.39892 * 120.05022 * 359.97377 * 6 4 3 8 8 C 1.36555 * 120.11151 * 179.74644 * 7 6 4 9 9 C 1.39342 * 120.21468 * 0.55479 * 8 7 6 10 10 S 1.76198 * 119.94943 * 179.71771 * 9 8 7 11 11 C 1.76195 * 100.00161 * 7.03854 * 10 9 8 12 12 H 1.08009 * 119.99785 * 5.69519 * 11 10 9 13 13 C 1.38825 * 120.00489 * 185.69252 * 11 10 9 14 14 N 1.31546 * 119.99358 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00273 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47222 * 89.99880 * 15 13 11 17 17 H 1.48495 * 109.47363 * 210.00106 * 15 13 11 18 18 H 1.48509 * 109.47242 * 330.00414 * 15 13 11 19 19 C 1.39604 * 120.10167 * 359.45039 * 9 8 7 20 20 F 1.35103 * 120.05604 * 180.29576 * 19 9 8 21 21 C 1.37793 * 119.89114 * 0.26623 * 19 9 8 22 22 H 1.09001 * 109.47418 * 299.99744 * 1 2 3 23 23 H 1.08995 * 109.46930 * 60.00724 * 1 2 3 24 24 H 1.09006 * 109.46903 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47223 * 239.99593 * 2 1 3 26 26 H 1.09004 * 109.46966 * 119.99892 * 2 1 3 27 27 H 1.08005 * 119.94572 * 0.04818 * 7 6 4 28 28 H 1.07998 * 119.89156 * 180.27144 * 8 7 6 29 29 H 0.97002 * 119.99820 * 179.97438 * 14 13 11 30 30 H 1.08001 * 120.10753 * 179.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3501 1.5456 0.0005 5 8 4.0905 0.5818 0.0015 6 6 3.9134 2.9074 0.0011 7 6 3.0623 4.0176 0.0006 8 6 3.5828 5.2800 0.0064 9 6 4.9633 5.4693 0.0012 10 16 5.6275 7.1013 0.0012 11 6 4.1486 8.0335 0.2212 12 1 3.2122 7.5261 0.4012 13 6 4.1869 9.4200 0.1633 14 7 5.3272 10.0378 -0.0564 15 14 2.6189 10.4081 0.3959 16 1 2.4400 10.7211 1.8365 17 1 2.7112 11.6724 -0.3776 18 1 1.4586 9.6164 -0.0863 19 6 5.8211 4.3678 0.0016 20 9 7.1594 4.5524 0.0026 21 6 5.3004 3.0920 0.0017 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.9915 3.8760 0.0005 28 1 2.9224 6.1345 0.0104 29 1 5.3540 11.0066 -0.0973 30 1 5.9607 2.2374 0.0016 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592361899.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:37 Heat of formation + Delta-G solvation = -129.865426 kcal Electronic energy + Delta-G solvation = -17387.932571 eV Core-core repulsion = 14188.193740 eV Total energy + Delta-G solvation = -3199.738831 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.83353 -41.54657 -39.47294 -37.57652 -34.85876 -32.98163 -32.23687 -31.47522 -27.99092 -26.12152 -23.89660 -23.56821 -22.10341 -20.24031 -19.34721 -18.13384 -17.77541 -17.54809 -17.23944 -16.93491 -16.73844 -16.60835 -15.29799 -15.10311 -15.07713 -14.63236 -14.29109 -13.75512 -13.53675 -13.50256 -13.04923 -12.99219 -12.91633 -12.84980 -12.49201 -12.20897 -11.89341 -11.52027 -11.49709 -11.47144 -10.78133 -10.67445 -9.93923 -8.68930 -8.56827 -6.37751 -0.51828 0.23485 1.12448 1.36063 1.42676 1.44863 1.55044 1.61124 2.11823 2.59366 2.86662 3.01771 3.27308 3.68374 3.74762 4.06761 4.07983 4.13559 4.28493 4.39739 4.53202 4.72588 4.97861 4.98220 5.03715 5.13171 5.16679 5.25537 5.41590 5.44849 5.76009 6.06518 6.69935 6.86888 8.51410 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.004873 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.171533 B = 5744.051460 C = 6970.312904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.527 3.473 5 O -0.540 6.540 6 C -0.157 4.157 7 C -0.026 4.026 8 C -0.143 4.143 9 C -0.102 4.102 10 S 0.034 5.966 11 C -0.576 4.576 12 H 0.111 0.889 13 C 0.029 3.971 14 N -0.899 5.899 15 Si 1.000 3.000 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.252 1.252 19 C 0.051 3.949 20 F -0.142 7.142 21 C -0.058 4.058 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.102 0.898 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.280 0.720 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.280 -13.898 0.193 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.374 3.626 5 O -0.432 6.432 6 C -0.164 4.164 7 C -0.047 4.047 8 C -0.169 4.169 9 C -0.220 4.220 10 S 0.293 5.707 11 C -0.722 4.722 12 H 0.129 0.871 13 C -0.178 4.178 14 N -0.533 5.533 15 Si 0.820 3.180 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.175 1.175 19 C 0.023 3.977 20 F -0.121 7.121 21 C -0.079 4.079 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.120 0.880 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.184 0.816 28 H 0.167 0.833 29 H 0.090 0.910 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -8.696 -13.268 0.052 15.864 hybrid contribution -1.033 0.262 0.174 1.079 sum -9.728 -13.007 0.226 16.244 Atomic orbital electron populations 1.21834 0.90238 1.04447 1.03793 1.23359 0.97113 0.78763 1.02805 1.86556 1.22473 1.34062 1.83859 1.20808 0.80968 0.89012 0.71831 1.90801 1.61073 1.43099 1.48226 1.18644 0.92566 0.90589 1.14605 1.21259 1.01188 0.89880 0.92389 1.21108 0.92736 0.99092 1.03920 1.23225 0.98223 0.99664 1.00893 1.83899 1.14772 0.91258 1.80733 1.23828 0.95995 0.94276 1.58130 0.87147 1.26190 1.01428 0.97883 0.92308 1.70072 1.27770 1.10936 1.44520 0.84918 0.76946 0.77218 0.78890 1.19127 1.20075 1.17500 1.16959 0.76904 0.92864 1.11006 1.91450 1.30006 1.96054 1.94545 1.20954 0.95063 0.95074 0.96783 0.91250 0.91241 0.87985 0.91081 0.91089 0.81586 0.83298 0.91023 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.29 71.98 0.74 -0.98 16 2 C 0.05 0.96 6.20 71.98 0.45 1.41 16 3 O -0.35 -8.65 9.46 -56.93 -0.54 -9.19 16 4 C 0.53 15.61 7.89 70.23 0.55 16.17 16 5 O -0.54 -18.05 16.13 19.73 0.32 -17.73 16 6 C -0.16 -4.94 5.88 -20.07 -0.12 -5.05 16 7 C -0.03 -0.79 9.55 22.28 0.21 -0.58 16 8 C -0.14 -5.28 9.16 22.14 0.20 -5.08 16 9 C -0.10 -4.36 6.12 22.87 0.14 -4.22 16 10 S 0.03 1.71 21.26 -56.49 -1.20 0.51 16 11 C -0.58 -29.48 8.99 67.96 0.61 -28.87 16 12 H 0.11 5.18 4.97 -2.91 -0.01 5.16 16 13 C 0.03 1.48 5.49 84.88 0.47 1.95 16 14 N -0.90 -49.46 13.22 21.65 0.29 -49.17 16 15 Si 1.00 39.02 29.55 68.60 2.03 41.05 16 16 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 18 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 19 C 0.05 2.00 7.27 22.49 0.16 2.17 16 20 F -0.14 -5.82 16.76 44.97 0.75 -5.07 16 21 C -0.06 -1.96 9.57 22.57 0.22 -1.75 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.17 3.92 7.59 -2.91 -0.02 3.90 16 28 H 0.15 5.58 5.01 -2.91 -0.01 5.57 16 29 H 0.28 14.27 8.31 -92.71 -0.77 13.49 16 30 H 0.15 4.78 7.65 -2.91 -0.02 4.76 16 Total: -1.00 -60.85 288.32 6.46 -54.39 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.18 Total: 10.03 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 3.63 Total: -24.82 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.29 Total: -49.17 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.22 Total: -26.92 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.75 Total: -5.07 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.20 Total: 0.51 kcal Total: -60.85 6.46 -54.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592361899.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.479 kcal (2) G-P(sol) polarization free energy of solvation -60.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds