Wall clock time and date at job start Mon Mar 30 2020 00:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99859 * 2 1 4 4 H 1.48496 * 109.46933 * 269.99814 * 3 2 1 5 5 H 1.48499 * 109.47427 * 30.00171 * 3 2 1 6 6 H 1.48499 * 109.46970 * 150.00201 * 3 2 1 7 7 C 1.37877 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00534 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99547 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47069 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47010 * 180.02562 * 10 9 7 12 12 C 1.38495 * 119.99952 * 179.97438 * 11 10 9 13 13 N 1.32607 * 119.53590 * 359.97438 * 12 11 10 14 14 C 1.31652 * 121.65887 * 179.97438 * 13 12 11 15 15 C 1.39645 * 120.52526 * 0.02562 * 14 13 12 16 16 C 1.47405 * 120.47266 * 180.02562 * 15 14 13 17 17 O 1.21511 * 119.99786 * 179.97438 * 16 15 14 18 18 O 1.34752 * 120.00136 * 359.97438 * 16 15 14 19 19 C 1.40379 * 119.04957 * 0.02562 * 15 14 13 20 20 C 1.36950 * 118.47688 * 359.97438 * 19 15 14 21 21 Cl 1.73601 * 120.31741 * 179.97438 * 20 19 15 22 22 H 0.97000 * 120.00191 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46946 * 60.00536 * 9 7 2 24 24 H 1.09000 * 109.47604 * 300.00576 * 9 7 2 25 25 H 1.08996 * 109.47069 * 60.00280 * 10 9 7 26 26 H 1.09008 * 109.46958 * 300.00274 * 10 9 7 27 27 H 0.97002 * 120.00295 * 0.02562 * 11 10 9 28 28 H 1.07991 * 119.73820 * 180.28106 * 14 13 12 29 29 H 0.96704 * 117.00259 * 179.97438 * 18 16 15 30 30 H 1.07994 * 120.76424 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1790 -3.8359 0.0008 13 7 5.5067 -4.9789 0.0019 14 6 6.1223 -6.1427 0.0020 15 6 7.5173 -6.2071 0.0016 16 6 8.2053 -7.5107 0.0012 17 8 9.4196 -7.5568 0.0003 18 8 7.4878 -8.6514 0.0018 19 6 8.2549 -5.0127 0.0015 20 6 7.5737 -3.8246 0.0013 21 17 8.4379 -2.3190 0.0019 22 1 -0.4850 0.8400 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8746 -0.6807 -0.8904 25 1 3.6579 -3.1506 -0.8896 26 1 3.6585 -3.1502 0.8904 27 1 5.9715 -1.7965 0.0005 28 1 5.5439 -7.0546 -0.0017 29 1 7.9833 -9.4818 0.0011 30 1 9.3346 -5.0303 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592425840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:40 Heat of formation + Delta-G solvation = -67.406285 kcal Electronic energy + Delta-G solvation = -17320.960834 eV Core-core repulsion = 14141.806690 eV Total energy + Delta-G solvation = -3179.154144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.87282 -39.70664 -36.75615 -36.37451 -36.14205 -33.25321 -32.48090 -31.31731 -29.29948 -25.52741 -24.33379 -23.28284 -21.54938 -20.82523 -18.49677 -18.10747 -17.38807 -17.02896 -16.31947 -15.85464 -15.19826 -15.02800 -14.61796 -14.26952 -13.75677 -13.66345 -13.38804 -13.11616 -12.68631 -12.20547 -11.82203 -11.65232 -11.49780 -11.29848 -10.98397 -10.77042 -10.24033 -10.12089 -9.98835 -9.70560 -9.64804 -9.40822 -8.67572 -7.80628 -6.17126 -4.17965 0.53937 0.97284 1.88113 2.41657 2.87978 3.16765 3.21517 3.29985 3.30439 3.62788 4.29514 4.32704 4.63468 4.66641 4.88632 5.11564 5.15835 5.51871 5.77689 5.90242 6.07086 6.08225 6.27052 6.43440 6.82004 7.08424 7.12150 7.27022 7.58447 7.71574 7.99150 8.36802 8.86280 9.42786 10.95635 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.029218 B = 0.004082 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.080737 B = 6857.703961 C = 7795.338974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.132 3.868 11 N -0.688 5.688 12 C 0.453 3.547 13 N -0.531 5.531 14 C 0.230 3.770 15 C -0.263 4.263 16 C 0.544 3.456 17 O -0.527 6.527 18 O -0.513 6.513 19 C 0.042 3.958 20 C -0.178 4.178 21 Cl -0.056 7.056 22 H 0.266 0.734 23 H 0.022 0.978 24 H 0.018 0.982 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.411 0.589 28 H 0.176 0.824 29 H 0.414 0.586 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.659 -11.684 0.018 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.063 4.063 10 C 0.010 3.990 11 N -0.313 5.313 12 C 0.211 3.789 13 N -0.250 5.250 14 C 0.067 3.933 15 C -0.271 4.271 16 C 0.389 3.611 17 O -0.417 6.417 18 O -0.325 6.325 19 C 0.017 3.983 20 C -0.213 4.213 21 Cl -0.028 7.028 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.250 0.750 28 H 0.193 0.807 29 H 0.272 0.728 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 15.495 -10.905 0.021 18.948 hybrid contribution 1.860 0.826 -0.019 2.036 sum 17.356 -10.080 0.001 20.070 Atomic orbital electron populations 1.69894 1.06266 1.27150 1.50126 1.24980 0.94756 0.99120 0.94262 0.86783 0.80299 0.83618 0.78597 1.20157 1.21162 1.19097 1.20847 0.88324 0.94964 1.52030 0.90461 1.19832 0.98255 0.91175 0.97004 1.21713 0.74484 1.00489 1.02284 1.45526 1.09179 1.04136 1.72417 1.18493 0.86191 0.88111 0.86139 1.67686 1.38088 0.96640 1.22563 1.23061 0.90403 0.95426 0.84439 1.19467 0.94723 0.90416 1.22469 1.20365 0.84877 0.84157 0.71673 1.90884 1.15131 1.88027 1.47680 1.84551 1.44723 1.17164 1.86089 1.20927 1.01050 0.88617 0.87715 1.20752 0.91208 0.88917 1.20408 1.98361 1.76001 1.30841 1.97557 0.92461 0.95927 0.96376 0.91188 0.91174 0.75049 0.80673 0.72774 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.72 27.47 -169.99 -4.67 16.06 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.52 -14.15 9.66 -34.44 -0.33 -14.48 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.02 -0.55 4.16 -27.88 -0.12 -0.66 16 10 C 0.13 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -10.92 5.64 -60.42 -0.34 -11.26 16 12 C 0.45 6.71 7.47 -155.21 -1.16 5.55 16 13 N -0.53 -7.81 9.53 -12.10 -0.12 -7.92 16 14 C 0.23 2.71 10.79 -17.10 -0.18 2.52 16 15 C -0.26 -3.04 5.89 -104.83 -0.62 -3.66 16 16 C 0.54 5.89 8.27 34.46 0.28 6.18 16 17 O -0.53 -7.06 17.19 -19.27 -0.33 -7.39 16 18 O -0.51 -3.87 12.69 -40.63 -0.52 -4.38 16 19 C 0.04 0.50 9.44 -39.24 -0.37 0.13 16 20 C -0.18 -2.31 6.32 -39.59 -0.25 -2.56 16 21 Cl -0.06 -0.67 27.57 -51.86 -1.43 -2.10 16 22 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 24 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 25 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 27 H 0.41 6.07 7.09 -40.82 -0.29 5.79 16 28 H 0.18 1.60 7.61 -52.49 -0.40 1.20 16 29 H 0.41 1.25 9.11 45.56 0.42 1.67 16 30 H 0.15 1.64 7.72 -52.49 -0.41 1.23 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -31.35 286.77 -7.05 -38.40 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -1.88 Total: 2.84 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -2.87 Total: -2.64 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.32 Total: -45.11 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.85 Total: -11.77 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.43 Total: -2.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.35 -7.05 -38.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592425840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.008 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds