Wall clock time and date at job start Mon Mar 30 2020 00:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99859 * 2 1 4 4 H 1.48496 * 109.46933 * 269.99814 * 3 2 1 5 5 H 1.48499 * 109.47427 * 30.00171 * 3 2 1 6 6 H 1.48499 * 109.46970 * 150.00201 * 3 2 1 7 7 C 1.37877 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00534 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99547 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47069 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47010 * 180.02562 * 10 9 7 12 12 C 1.38495 * 119.99952 * 179.97438 * 11 10 9 13 13 N 1.32607 * 119.53590 * 359.97438 * 12 11 10 14 14 C 1.31652 * 121.65887 * 179.97438 * 13 12 11 15 15 C 1.39645 * 120.52526 * 0.02562 * 14 13 12 16 16 C 1.47405 * 120.47266 * 180.02562 * 15 14 13 17 17 O 1.21511 * 119.99786 * 179.97438 * 16 15 14 18 18 O 1.34752 * 120.00136 * 359.97438 * 16 15 14 19 19 C 1.40379 * 119.04957 * 0.02562 * 15 14 13 20 20 C 1.36950 * 118.47688 * 359.97438 * 19 15 14 21 21 Cl 1.73601 * 120.31741 * 179.97438 * 20 19 15 22 22 H 0.97000 * 120.00191 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46946 * 60.00536 * 9 7 2 24 24 H 1.09000 * 109.47604 * 300.00576 * 9 7 2 25 25 H 1.08996 * 109.47069 * 60.00280 * 10 9 7 26 26 H 1.09008 * 109.46958 * 300.00274 * 10 9 7 27 27 H 0.97002 * 120.00295 * 0.02562 * 11 10 9 28 28 H 1.07991 * 119.73820 * 180.28106 * 14 13 12 29 29 H 0.96704 * 117.00259 * 179.97438 * 18 16 15 30 30 H 1.07994 * 120.76424 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1790 -3.8359 0.0008 13 7 5.5067 -4.9789 0.0019 14 6 6.1223 -6.1427 0.0020 15 6 7.5173 -6.2071 0.0016 16 6 8.2053 -7.5107 0.0012 17 8 9.4196 -7.5568 0.0003 18 8 7.4878 -8.6514 0.0018 19 6 8.2549 -5.0127 0.0015 20 6 7.5737 -3.8246 0.0013 21 17 8.4379 -2.3190 0.0019 22 1 -0.4850 0.8400 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8746 -0.6807 -0.8904 25 1 3.6579 -3.1506 -0.8896 26 1 3.6585 -3.1502 0.8904 27 1 5.9715 -1.7965 0.0005 28 1 5.5439 -7.0546 -0.0017 29 1 7.9833 -9.4818 0.0011 30 1 9.3346 -5.0303 0.0015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592425840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:39 Heat of formation + Delta-G solvation = -89.004112 kcal Electronic energy + Delta-G solvation = -17321.897386 eV Core-core repulsion = 14141.806690 eV Total energy + Delta-G solvation = -3180.090696 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84079 -40.61865 -37.73359 -37.57417 -37.01359 -35.11602 -33.53226 -32.85897 -30.65832 -27.07286 -25.35232 -24.54673 -22.61304 -22.36604 -19.39603 -19.33128 -18.82297 -18.23034 -17.53488 -16.74722 -16.32911 -16.24100 -16.07953 -15.76817 -15.11347 -14.84010 -14.62439 -14.25445 -14.04174 -13.40856 -13.29111 -13.08505 -12.56280 -12.36493 -12.31391 -12.04828 -11.89074 -11.81398 -11.50343 -11.35149 -10.80806 -10.75727 -10.66919 -8.94053 -8.30322 -6.36531 -0.44518 0.00174 0.90883 1.37821 1.39425 1.50060 1.50359 1.96363 2.15579 2.35289 2.64177 3.04967 3.29296 3.60002 3.73010 3.99871 4.17558 4.33185 4.46260 4.60954 4.75979 4.90918 5.04648 5.28323 5.39262 5.53955 5.61587 5.86300 6.08157 6.23702 6.70803 6.91382 7.04611 7.28048 8.85959 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.029218 B = 0.004082 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.080737 B = 6857.703961 C = 7795.338974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.532 4.532 8 H 0.038 0.962 9 C -0.019 4.019 10 C 0.154 3.846 11 N -0.694 5.694 12 C 0.439 3.561 13 N -0.557 5.557 14 C 0.231 3.769 15 C -0.256 4.256 16 C 0.554 3.446 17 O -0.553 6.553 18 O -0.502 6.502 19 C 0.044 3.956 20 C -0.177 4.177 21 Cl -0.047 7.047 22 H 0.268 0.732 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.416 0.584 28 H 0.202 0.798 29 H 0.436 0.564 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.969 -11.973 0.019 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.571 4.571 8 H 0.056 0.944 9 C -0.057 4.057 10 C 0.031 3.969 11 N -0.322 5.322 12 C 0.199 3.801 13 N -0.276 5.276 14 C 0.069 3.931 15 C -0.263 4.263 16 C 0.400 3.600 17 O -0.445 6.445 18 O -0.316 6.316 19 C 0.018 3.982 20 C -0.211 4.211 21 Cl -0.018 7.018 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.255 0.745 28 H 0.218 0.782 29 H 0.298 0.702 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 17.845 -11.268 0.022 21.105 hybrid contribution 1.159 0.679 -0.022 1.344 sum 19.004 -10.590 0.001 21.756 Atomic orbital electron populations 1.70053 1.08342 1.28317 1.52031 1.25963 0.95588 1.03449 0.93900 0.85666 0.79628 0.78170 0.79225 1.19160 1.21188 1.16592 1.21188 0.91140 0.93562 1.51187 0.94376 1.19697 0.94851 0.93495 0.97635 1.21153 0.76527 0.98035 1.01189 1.45141 1.07614 1.04974 1.74448 1.18585 0.86853 0.87760 0.86938 1.67674 1.39200 0.97456 1.23236 1.23441 0.90774 0.95349 0.83545 1.19643 0.94733 0.91044 1.20921 1.20131 0.84303 0.84618 0.70988 1.90888 1.16216 1.88477 1.48955 1.84500 1.44474 1.17464 1.85141 1.21118 1.01704 0.88377 0.86964 1.20715 0.90540 0.89713 1.20157 1.98363 1.75610 1.30340 1.97521 0.92350 0.95101 0.95244 0.92386 0.92406 0.74453 0.78185 0.70177 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.95 13.96 21.45 0.30 -57.65 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 42.19 27.47 68.60 1.88 44.08 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 7 C -0.53 -29.39 9.66 25.60 0.25 -29.14 16 8 H 0.04 2.33 7.99 -2.92 -0.02 2.30 16 9 C -0.02 -0.82 4.16 29.85 0.12 -0.70 16 10 C 0.15 5.79 5.61 86.38 0.48 6.28 16 11 N -0.69 -21.41 5.64 -345.06 -1.95 -23.36 16 12 C 0.44 12.53 7.47 133.26 1.00 13.53 16 13 N -0.56 -15.80 9.53 -192.19 -1.83 -17.64 16 14 C 0.23 4.98 10.79 85.06 0.92 5.90 16 15 C -0.26 -5.35 5.89 -20.00 -0.12 -5.47 16 16 C 0.55 10.54 8.27 70.24 0.58 11.12 16 17 O -0.55 -13.54 17.19 19.80 0.34 -13.20 16 18 O -0.50 -5.94 12.69 -56.63 -0.72 -6.66 16 19 C 0.04 0.95 9.44 22.49 0.21 1.16 16 20 C -0.18 -4.30 6.32 22.27 0.14 -4.16 16 21 Cl -0.05 -1.03 27.57 -2.72 -0.08 -1.11 16 22 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 23 H 0.03 1.29 7.20 -2.39 -0.02 1.28 16 24 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.42 11.69 7.09 -92.71 -0.66 11.04 16 28 H 0.20 3.14 7.61 -2.92 -0.02 3.11 16 29 H 0.44 1.16 9.11 -74.05 -0.67 0.48 16 30 H 0.16 3.17 7.72 -2.91 -0.02 3.15 16 Total: -1.00 -68.05 286.77 1.82 -66.23 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -0.18 Total: 9.84 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 4.05 Total: -0.53 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -3.48 Total: -98.64 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.38 Total: -19.86 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.08 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -68.05 1.82 -66.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592425840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.774 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds