Wall clock time and date at job start Mon Mar 30 2020 01:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47238 * 2 1 4 4 C 1.50699 * 109.47249 * 240.00072 * 2 1 3 5 5 H 1.07993 * 119.99866 * 240.00516 * 4 2 1 6 6 C 1.37873 * 119.99996 * 60.00112 * 4 2 1 7 7 N 1.31522 * 120.00147 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00059 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47079 * 90.00402 * 8 6 4 10 10 H 1.48504 * 109.47254 * 209.99966 * 8 6 4 11 11 H 1.48499 * 109.46981 * 330.00221 * 8 6 4 12 12 C 1.53000 * 109.47019 * 120.00187 * 2 1 3 13 13 S 1.81408 * 109.46995 * 300.00248 * 12 2 1 14 14 C 1.76200 * 102.99890 * 180.02562 * 13 12 2 15 15 C 1.38943 * 120.08321 * 359.96994 * 14 13 12 16 16 C 1.38095 * 119.93341 * 180.02562 * 15 14 13 17 17 C 1.38315 * 120.09588 * 0.02843 * 16 15 14 18 18 C 1.38285 * 120.17055 * 359.97438 * 17 16 15 19 19 C 1.38189 * 120.06580 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 120.05138 * 180.02562 * 19 18 17 21 21 H 1.09000 * 109.47178 * 300.00329 * 1 2 3 22 22 H 1.09007 * 109.46994 * 59.99568 * 1 2 3 23 23 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46915 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.46869 * 300.00113 * 3 2 1 26 26 H 1.09006 * 109.46519 * 60.00082 * 3 2 1 27 27 H 0.96998 * 119.99680 * 179.97438 * 7 6 4 28 28 H 1.08992 * 109.47057 * 179.97438 * 12 2 1 29 29 H 1.09000 * 109.47233 * 59.99823 * 12 2 1 30 30 H 1.08003 * 120.03525 * 0.05021 * 15 14 13 31 31 H 1.08000 * 119.95248 * 180.29889 * 16 15 14 32 32 H 1.08003 * 119.91246 * 179.97438 * 17 16 15 33 33 H 1.07997 * 119.97004 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3428 -2.1616 -4.4119 10 1 2.4867 -0.1413 -5.1123 11 1 3.6294 -1.7583 -3.7121 12 6 2.0400 -0.7213 1.2492 13 16 1.4352 0.1338 2.7304 14 6 2.1130 -0.8235 4.0452 15 6 2.8986 -1.9347 3.7646 16 6 3.4278 -2.6831 4.7975 17 6 3.1765 -2.3284 6.1105 18 6 2.3952 -1.2233 6.3946 19 6 1.8630 -0.4689 5.3663 20 17 0.8828 0.9187 5.7233 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8901 27 1 0.7089 1.1613 -3.4844 28 1 3.1299 -0.7217 1.2490 29 1 1.6766 -1.7489 1.2492 30 1 3.0954 -2.2126 2.7397 31 1 4.0424 -3.5440 4.5797 32 1 3.5915 -2.9160 6.9160 33 1 2.2014 -0.9490 7.4210 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594879266.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:36 Heat of formation + Delta-G solvation = -8.781778 kcal Electronic energy + Delta-G solvation = -15995.366527 eV Core-core repulsion = 13365.047747 eV Total energy + Delta-G solvation = -2630.318780 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99386 -37.91789 -37.38326 -33.57036 -32.21509 -31.59478 -28.06343 -27.60744 -27.17076 -23.88773 -23.53603 -20.91150 -18.88688 -17.93643 -17.27298 -16.73211 -16.41902 -15.78425 -15.28662 -15.24992 -14.84377 -14.55393 -14.35462 -13.99277 -13.28244 -13.23464 -12.82523 -12.73203 -12.53540 -12.50221 -12.37643 -12.26340 -12.06774 -11.86672 -11.49052 -11.32693 -11.21065 -10.70021 -10.46725 -10.38643 -9.81005 -8.32406 -8.01697 -6.19729 0.11895 0.22937 0.59142 1.18744 1.43526 1.45855 1.53994 1.66459 2.45875 2.61286 3.21641 3.78918 4.07294 4.22535 4.26425 4.36177 4.37963 4.49758 4.69884 4.84274 4.90299 5.02411 5.11491 5.18077 5.19046 5.26248 5.42575 5.44250 5.62426 5.65416 5.82799 6.06329 6.17442 6.38828 6.84932 7.48302 8.97485 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.004980 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.241291 B = 5621.066626 C = 6327.242537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.074 3.926 3 C -0.123 4.123 4 C -0.523 4.523 5 H 0.054 0.946 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.950 3.050 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.270 1.270 12 C -0.071 4.071 13 S -0.115 6.115 14 C -0.100 4.100 15 C -0.142 4.142 16 C -0.093 4.093 17 C -0.113 4.113 18 C -0.094 4.094 19 C -0.046 4.046 20 Cl -0.068 7.068 21 H 0.030 0.970 22 H 0.060 0.940 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 -5.560 16.660 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 C -0.181 4.181 4 C -0.563 4.563 5 H 0.072 0.928 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.195 1.195 12 C -0.219 4.219 13 S 0.133 5.867 14 C -0.214 4.214 15 C -0.167 4.167 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.114 4.114 19 C -0.079 4.079 20 Cl -0.039 7.039 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.145 0.855 31 H 0.175 0.825 32 H 0.187 0.813 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.040 -4.272 16.466 17.281 hybrid contribution 0.785 -1.129 -1.276 1.876 sum 3.825 -5.402 15.190 16.569 Atomic orbital electron populations 1.21734 0.97602 0.98806 0.99976 1.17976 0.92802 0.92506 0.89457 1.21731 0.98133 0.98273 0.99970 1.21299 1.31791 1.12236 0.90962 0.92812 1.25559 0.95126 0.95557 1.01294 1.69957 1.37102 1.23542 1.23625 0.85679 0.78787 0.78331 0.79532 1.20450 1.21178 1.19467 1.23886 1.02461 1.01365 0.94174 1.85865 1.64670 1.38888 0.97324 1.22149 1.02674 1.00381 0.96214 1.21415 0.99051 0.94995 1.01212 1.21531 0.98097 0.99376 0.92276 1.21534 0.97977 0.96466 0.97464 1.21331 0.96739 0.94688 0.98655 1.20656 1.01012 0.93334 0.92898 1.98356 1.69341 1.41684 1.94509 0.95152 0.92078 0.95724 0.95708 0.92078 0.95158 0.93079 0.90758 0.90750 0.85482 0.82471 0.81270 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.01 71.98 0.58 -5.37 16 2 C 0.07 3.55 0.52 -52.93 -0.03 3.52 16 3 C -0.12 -5.94 8.01 71.98 0.58 -5.37 16 4 C -0.52 -27.29 8.01 25.60 0.21 -27.09 16 5 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 6 C 0.02 1.28 5.15 84.65 0.44 1.72 16 7 N -0.90 -49.55 9.35 21.45 0.20 -49.35 16 8 Si 0.95 42.14 29.54 68.60 2.03 44.16 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 C -0.07 -2.87 3.27 71.98 0.24 -2.64 16 13 S -0.12 -4.31 17.88 -56.49 -1.01 -5.32 16 14 C -0.10 -3.18 6.11 22.63 0.14 -3.04 16 15 C -0.14 -3.94 9.36 22.40 0.21 -3.73 16 16 C -0.09 -1.87 10.04 22.25 0.22 -1.64 16 17 C -0.11 -1.93 10.04 22.30 0.22 -1.70 16 18 C -0.09 -1.94 9.82 22.27 0.22 -1.72 16 19 C -0.05 -1.27 6.34 22.45 0.14 -1.13 16 20 Cl -0.07 -1.91 27.84 -2.72 -0.08 -1.99 16 21 H 0.03 1.36 6.91 -2.39 -0.02 1.34 16 22 H 0.06 3.25 6.07 -2.38 -0.01 3.24 16 23 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 26 H 0.03 1.35 6.92 -2.38 -0.02 1.34 16 27 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 28 H 0.07 2.94 7.75 -2.39 -0.02 2.92 16 29 H 0.07 2.94 7.75 -2.39 -0.02 2.92 16 30 H 0.13 3.62 5.88 -2.91 -0.02 3.61 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -57.88 294.48 5.40 -52.48 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.10 Total: 8.21 kcal Atomic # 6 Polarization: -51.35 SS G_CDS: 3.16 Total: -48.19 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.20 Total: -49.35 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -1.01 Total: -5.32 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -57.88 5.40 -52.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594879266.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.696 kcal (2) G-P(sol) polarization free energy of solvation -57.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds