Wall clock time and date at job start Mon Mar 30 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 C 1.50701 * 109.47104 * 239.99651 * 2 1 3 5 5 H 1.07992 * 120.00230 * 240.00846 * 4 2 1 6 6 C 1.37885 * 119.99385 * 60.00207 * 4 2 1 7 7 N 1.31513 * 120.00309 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99568 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47103 * 90.00293 * 8 6 4 10 10 H 1.48504 * 109.47034 * 210.00476 * 8 6 4 11 11 H 1.48503 * 109.47134 * 330.00410 * 8 6 4 12 12 C 1.52996 * 109.46718 * 120.00285 * 2 1 3 13 13 S 1.81402 * 109.47287 * 299.99393 * 12 2 1 14 14 C 1.76207 * 103.00078 * 180.02562 * 13 12 2 15 15 C 1.38958 * 120.06497 * 0.27613 * 14 13 12 16 16 C 1.38086 * 119.92813 * 180.27812 * 15 14 13 17 17 C 1.38394 * 120.06741 * 359.44443 * 16 15 14 18 18 Cl 1.73601 * 119.93375 * 180.30157 * 17 16 15 19 19 C 1.38400 * 120.13420 * 0.28272 * 17 16 15 20 20 C 1.38078 * 120.06774 * 359.97438 * 19 17 16 21 21 H 1.09007 * 109.46966 * 300.00359 * 1 2 3 22 22 H 1.09002 * 109.46690 * 59.99469 * 1 2 3 23 23 H 1.08993 * 109.47758 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46966 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46909 * 299.99804 * 3 2 1 26 26 H 1.09000 * 109.47150 * 60.00188 * 3 2 1 27 27 H 0.96998 * 119.99519 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47186 * 179.97438 * 12 2 1 29 29 H 1.09000 * 109.47621 * 59.99783 * 12 2 1 30 30 H 1.07998 * 120.03491 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.96910 * 179.72953 * 16 15 14 32 32 H 1.08000 * 119.96622 * 180.02562 * 19 17 16 33 33 H 1.08007 * 120.03719 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3426 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6292 -1.7586 -3.7122 12 6 2.0399 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 6 2.1131 -0.8236 4.0452 15 6 2.9037 -1.9312 3.7641 16 6 3.4287 -2.6829 4.7967 17 6 3.1776 -2.3273 6.1104 18 17 3.8457 -3.2702 7.4059 19 6 2.3951 -1.2214 6.3935 20 6 1.8630 -0.4689 5.3653 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 0.7090 1.1614 -3.4844 28 1 3.1299 -0.7218 1.2490 29 1 1.6766 -1.7490 1.2492 30 1 3.1040 -2.2062 2.7392 31 1 4.0396 -3.5464 4.5790 32 1 2.2013 -0.9462 7.4197 33 1 1.2529 0.3943 5.5868 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594879547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:38 Heat of formation + Delta-G solvation = 0.848478 kcal Electronic energy + Delta-G solvation = -15776.347018 eV Core-core repulsion = 13146.445837 eV Total energy + Delta-G solvation = -2629.901181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03311 -36.46057 -36.07974 -31.70023 -31.09637 -30.71351 -26.42872 -25.72208 -25.20145 -22.71245 -22.69257 -19.12728 -17.70759 -16.35820 -16.06187 -15.38271 -14.83146 -14.45693 -13.95696 -13.78926 -13.54497 -13.30082 -12.88377 -12.49818 -11.84760 -11.78312 -11.55019 -11.37780 -11.21691 -10.89988 -10.86975 -10.70746 -10.38212 -10.16721 -9.86169 -9.64218 -9.50442 -9.31017 -9.10329 -8.71005 -8.43612 -6.97736 -6.06479 -4.18381 1.05892 1.26674 1.91467 2.16069 3.00231 3.23892 3.31517 3.34101 3.56150 4.34628 4.74701 4.83049 5.19804 5.26829 5.37279 5.52735 5.82082 5.88492 5.93372 6.05706 6.19286 6.27833 6.40585 6.68914 6.72766 6.87134 7.01718 7.03542 7.30492 7.53952 7.64714 7.97795 8.08835 8.32124 8.80573 9.47485 10.94497 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.035839 B = 0.004006 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.087702 B = 6986.967920 C = 7576.988129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 C -0.134 4.134 4 C -0.509 4.509 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.078 4.078 13 S -0.108 6.108 14 C -0.076 4.076 15 C -0.127 4.127 16 C -0.089 4.089 17 C -0.055 4.055 18 Cl -0.082 7.082 19 C -0.093 4.093 20 C -0.099 4.099 21 H 0.019 0.981 22 H 0.086 0.914 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.086 0.914 26 H 0.019 0.981 27 H 0.261 0.739 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -3.791 14.481 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.080 3.920 3 C -0.192 4.192 4 C -0.549 4.549 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 C -0.226 4.226 13 S 0.142 5.858 14 C -0.189 4.189 15 C -0.152 4.152 16 C -0.109 4.109 17 C -0.085 4.085 18 Cl -0.054 7.054 19 C -0.113 4.113 20 C -0.124 4.124 21 H 0.038 0.962 22 H 0.105 0.895 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.929 -2.702 14.356 14.735 hybrid contribution 1.251 -1.790 -0.756 2.311 sum 3.180 -4.492 13.600 14.671 Atomic orbital electron populations 1.21892 0.97256 0.99329 1.00772 1.17999 0.93050 0.92538 0.88373 1.21889 0.98511 0.98064 1.00773 1.20990 1.31921 1.12190 0.89760 0.92594 1.24880 0.94814 0.94882 0.98796 1.69813 1.36340 1.22526 1.23359 0.86570 0.79242 0.79423 0.82621 1.20651 1.21146 1.19950 1.24238 1.02695 1.01678 0.93993 1.85745 1.64005 1.38495 0.97603 1.22396 0.99494 0.98494 0.98551 1.21286 0.98797 0.95258 0.99828 1.20932 0.99656 0.99899 0.90438 1.20799 1.02465 0.96341 0.88870 1.98346 1.84731 1.72424 1.49879 1.20910 0.96851 0.93802 0.99768 1.20725 1.01093 1.00396 0.90194 0.96216 0.89543 0.95459 0.95458 0.89531 0.96222 0.92858 0.90656 0.90660 0.84627 0.85036 0.84953 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.01 37.16 0.30 -2.81 16 2 C 0.08 1.89 0.52 -155.66 -0.08 1.81 16 3 C -0.13 -3.10 8.01 37.16 0.30 -2.80 16 4 C -0.51 -12.97 8.01 -34.44 -0.28 -13.24 16 5 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -23.42 9.35 55.43 0.52 -22.90 16 8 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 C -0.08 -1.53 3.27 37.16 0.12 -1.41 16 13 S -0.11 -1.89 18.98 -107.50 -2.04 -3.93 16 14 C -0.08 -1.16 6.11 -39.05 -0.24 -1.39 16 15 C -0.13 -1.83 9.36 -39.37 -0.37 -2.20 16 16 C -0.09 -1.13 9.82 -39.58 -0.39 -1.52 16 17 C -0.05 -0.68 6.32 -39.46 -0.25 -0.93 16 18 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 19 C -0.09 -1.10 9.82 -39.58 -0.39 -1.49 16 20 C -0.10 -1.31 9.79 -39.37 -0.39 -1.70 16 21 H 0.02 0.41 6.92 -51.93 -0.36 0.05 16 22 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 26 H 0.02 0.41 6.91 -51.93 -0.36 0.05 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.07 1.44 7.73 -51.93 -0.40 1.04 16 29 H 0.07 1.44 7.76 -51.92 -0.40 1.03 16 30 H 0.14 1.95 5.88 -52.49 -0.31 1.64 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -25.64 296.19 -9.45 -35.09 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.12 Total: 0.45 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -1.75 Total: -26.01 kcal Atomic # 7 Polarization: -23.42 SS G_CDS: 0.52 Total: -22.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.04 Total: -3.93 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -25.64 -9.45 -35.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594879547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.936 kcal (2) G-P(sol) polarization free energy of solvation -25.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds