Wall clock time and date at job start Mon Mar 30 2020 01:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47448 * 2 1 4 4 C 1.50701 * 109.47104 * 239.99651 * 2 1 3 5 5 H 1.07992 * 120.00230 * 240.00846 * 4 2 1 6 6 C 1.37885 * 119.99385 * 60.00207 * 4 2 1 7 7 N 1.31513 * 120.00309 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99568 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47103 * 90.00293 * 8 6 4 10 10 H 1.48504 * 109.47034 * 210.00476 * 8 6 4 11 11 H 1.48503 * 109.47134 * 330.00410 * 8 6 4 12 12 C 1.52996 * 109.46718 * 120.00285 * 2 1 3 13 13 S 1.81402 * 109.47287 * 299.99393 * 12 2 1 14 14 C 1.76207 * 103.00078 * 180.02562 * 13 12 2 15 15 C 1.38958 * 120.06497 * 0.27613 * 14 13 12 16 16 C 1.38086 * 119.92813 * 180.27812 * 15 14 13 17 17 C 1.38394 * 120.06741 * 359.44443 * 16 15 14 18 18 Cl 1.73601 * 119.93375 * 180.30157 * 17 16 15 19 19 C 1.38400 * 120.13420 * 0.28272 * 17 16 15 20 20 C 1.38078 * 120.06774 * 359.97438 * 19 17 16 21 21 H 1.09007 * 109.46966 * 300.00359 * 1 2 3 22 22 H 1.09002 * 109.46690 * 59.99469 * 1 2 3 23 23 H 1.08993 * 109.47758 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46966 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46909 * 299.99804 * 3 2 1 26 26 H 1.09000 * 109.47150 * 60.00188 * 3 2 1 27 27 H 0.96998 * 119.99519 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47186 * 179.97438 * 12 2 1 29 29 H 1.09000 * 109.47621 * 59.99783 * 12 2 1 30 30 H 1.07998 * 120.03491 * 0.02562 * 15 14 13 31 31 H 1.08002 * 119.96910 * 179.72953 * 16 15 14 32 32 H 1.08000 * 119.96622 * 180.02562 * 19 17 16 33 33 H 1.08007 * 120.03719 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3426 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6292 -1.7586 -3.7122 12 6 2.0399 -0.7213 1.2492 13 16 1.4354 0.1338 2.7304 14 6 2.1131 -0.8236 4.0452 15 6 2.9037 -1.9312 3.7641 16 6 3.4287 -2.6829 4.7967 17 6 3.1776 -2.3273 6.1104 18 17 3.8457 -3.2702 7.4059 19 6 2.3951 -1.2214 6.3935 20 6 1.8630 -0.4689 5.3653 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 0.7090 1.1614 -3.4844 28 1 3.1299 -0.7218 1.2490 29 1 1.6766 -1.7490 1.2492 30 1 3.1040 -2.2062 2.7392 31 1 4.0396 -3.5464 4.5790 32 1 2.2013 -0.9462 7.4197 33 1 1.2529 0.3943 5.5868 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594879547.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:38 Heat of formation + Delta-G solvation = -8.945172 kcal Electronic energy + Delta-G solvation = -15776.771703 eV Core-core repulsion = 13146.445837 eV Total energy + Delta-G solvation = -2630.325865 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.05496 -37.90181 -37.39688 -33.57766 -32.17760 -31.75818 -28.05221 -27.59223 -27.16755 -23.76337 -23.75234 -20.90526 -18.86679 -17.93614 -17.45396 -16.73945 -16.39732 -15.73252 -15.37186 -15.19711 -14.63130 -14.52123 -14.40882 -14.15279 -13.32763 -13.27255 -12.94473 -12.83788 -12.63605 -12.57449 -12.38207 -12.24769 -12.00667 -11.80301 -11.47171 -11.40048 -11.24188 -10.49834 -10.47605 -10.33008 -10.10897 -8.28184 -8.02004 -6.19666 0.00629 0.25705 0.63222 1.15844 1.43308 1.45991 1.53737 1.62267 2.45835 2.53051 3.21592 3.76135 3.87824 4.23141 4.25702 4.27410 4.37760 4.52915 4.70916 4.90116 4.92544 5.01851 5.03684 5.17145 5.19890 5.20310 5.24688 5.43944 5.63908 5.66052 5.68078 6.08421 6.18526 6.39535 6.85210 7.48462 8.97043 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.035839 B = 0.004006 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.087702 B = 6986.967920 C = 7576.988129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.073 3.927 3 C -0.124 4.124 4 C -0.525 4.525 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.903 5.903 8 Si 0.948 3.052 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.271 1.271 12 C -0.069 4.069 13 S -0.121 6.121 14 C -0.093 4.093 15 C -0.137 4.137 16 C -0.091 4.091 17 C -0.054 4.054 18 Cl -0.067 7.067 19 C -0.087 4.087 20 C -0.099 4.099 21 H 0.033 0.967 22 H 0.060 0.940 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.161 0.839 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -4.626 16.321 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.072 3.928 3 C -0.182 4.182 4 C -0.565 4.565 5 H 0.071 0.929 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.196 1.196 12 C -0.217 4.217 13 S 0.127 5.873 14 C -0.206 4.206 15 C -0.161 4.161 16 C -0.111 4.111 17 C -0.084 4.084 18 Cl -0.038 7.038 19 C -0.108 4.108 20 C -0.123 4.123 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.167 0.833 32 H 0.178 0.822 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.532 -3.554 16.213 16.790 hybrid contribution 1.103 -1.581 -1.153 2.247 sum 3.635 -5.136 15.059 16.321 Atomic orbital electron populations 1.21736 0.97470 0.98832 1.00121 1.17987 0.92900 0.92559 0.89388 1.21733 0.98125 0.98172 1.00120 1.21321 1.31812 1.12253 0.91067 0.92897 1.25531 0.95133 0.95539 1.01214 1.69944 1.37102 1.23458 1.23631 0.85712 0.78782 0.78371 0.79668 1.20478 1.21161 1.19560 1.23869 1.02513 1.01342 0.94000 1.85568 1.64970 1.39238 0.97574 1.22340 1.00920 0.99039 0.98297 1.21320 0.99159 0.95489 1.00163 1.21114 0.99535 1.00166 0.90334 1.20983 1.01857 0.96381 0.89193 1.98358 1.84446 1.72007 1.48986 1.21204 0.95767 0.93032 1.00769 1.20941 1.00946 1.00901 0.89517 0.94822 0.92123 0.95782 0.95770 0.92112 0.94829 0.93063 0.90706 0.90699 0.85218 0.83312 0.82171 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.01 71.98 0.58 -5.18 16 2 C 0.07 3.40 0.52 -52.93 -0.03 3.37 16 3 C -0.12 -5.76 8.01 71.98 0.58 -5.18 16 4 C -0.52 -26.98 8.01 25.60 0.21 -26.78 16 5 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 6 C 0.03 1.34 5.15 84.66 0.44 1.77 16 7 N -0.90 -48.76 9.35 21.45 0.20 -48.56 16 8 Si 0.95 41.77 29.54 68.60 2.03 43.80 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 C -0.07 -2.70 3.27 71.98 0.24 -2.46 16 13 S -0.12 -4.14 18.98 -56.49 -1.07 -5.22 16 14 C -0.09 -2.70 6.11 22.62 0.14 -2.56 16 15 C -0.14 -3.78 9.36 22.41 0.21 -3.57 16 16 C -0.09 -2.13 9.82 22.27 0.22 -1.91 16 17 C -0.05 -1.19 6.32 22.35 0.14 -1.05 16 18 Cl -0.07 -1.27 28.95 -2.72 -0.08 -1.35 16 19 C -0.09 -1.80 9.82 22.27 0.22 -1.58 16 20 C -0.10 -2.37 9.79 22.40 0.22 -2.16 16 21 H 0.03 1.43 6.92 -2.38 -0.02 1.41 16 22 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 23 H 0.02 1.07 8.14 -2.39 -0.02 1.06 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 26 H 0.03 1.42 6.91 -2.39 -0.02 1.41 16 27 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 28 H 0.07 2.86 7.73 -2.39 -0.02 2.84 16 29 H 0.07 2.86 7.76 -2.39 -0.02 2.84 16 30 H 0.13 3.67 5.88 -2.91 -0.02 3.65 16 31 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -53.91 296.19 5.33 -48.58 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.10 Total: 10.02 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 3.15 Total: -47.28 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.20 Total: -48.56 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.07 Total: -5.22 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -53.91 5.33 -48.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594879547.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.639 kcal (2) G-P(sol) polarization free energy of solvation -53.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds