Wall clock time and date at job start Mon Mar 30 2020 01:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50693 * 109.46819 * 2 1 4 4 N 1.29322 * 126.06367 * 89.97762 * 3 2 1 5 5 N 1.26091 * 117.98014 * 179.97438 * 4 3 2 6 6 C 1.30316 * 117.60527 * 0.02562 * 5 4 3 7 7 S 1.76194 * 126.17068 * 179.97438 * 6 5 4 8 8 C 1.80997 * 100.00387 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47479 * 180.02562 * 8 7 6 10 10 C 1.50703 * 115.54889 * 294.71486 * 9 8 7 11 11 H 1.08002 * 119.99815 * 99.45460 * 10 9 8 12 12 C 1.37880 * 120.00094 * 279.45820 * 10 9 8 13 13 N 1.31510 * 119.99779 * 5.64038 * 12 10 9 14 14 Si 1.86795 * 119.99753 * 185.63832 * 12 10 9 15 15 H 1.48508 * 109.46786 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.47282 * 299.99790 * 14 12 10 17 17 H 1.48503 * 109.47264 * 59.99915 * 14 12 10 18 18 C 1.52996 * 117.52021 * 80.41548 * 9 8 7 19 19 C 1.52996 * 117.49993 * 149.04712 * 9 8 7 20 20 S 1.76491 * 126.06174 * 270.25792 * 3 2 1 21 21 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46747 * 300.00078 * 1 2 3 23 23 H 1.08997 * 109.47121 * 59.99845 * 1 2 3 24 24 H 1.09000 * 109.46747 * 239.99922 * 2 1 3 25 25 H 1.09001 * 109.46669 * 120.00015 * 2 1 3 26 26 H 1.09007 * 109.47099 * 60.00206 * 8 7 6 27 27 H 1.08999 * 109.47340 * 300.00523 * 8 7 6 28 28 H 0.97005 * 120.00480 * 354.98417 * 13 12 10 29 29 H 1.08997 * 117.49942 * 214.97304 * 18 9 8 30 30 H 1.09008 * 117.49669 * 359.97438 * 18 9 8 31 31 H 1.09000 * 117.49991 * 359.97438 * 19 9 8 32 32 H 1.09003 * 117.50032 * 144.97378 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2856 2.1387 1.0454 5 7 2.7022 3.3155 0.8681 6 6 2.8478 3.7259 -0.3602 7 16 3.4106 5.3174 -0.8650 8 6 3.6814 6.0829 0.7527 9 6 4.1869 7.5142 0.5615 10 6 5.5424 7.6440 -0.0841 11 1 5.6195 7.8733 -1.1367 12 6 6.6842 7.4700 0.6690 13 7 6.5925 7.0823 1.9223 14 14 8.3613 7.7848 -0.0910 15 1 9.4187 7.5285 0.9197 16 1 8.5562 6.8801 -1.2524 17 1 8.4422 9.1967 -0.5443 18 6 3.1495 8.5946 0.2494 19 6 3.8109 8.5446 1.6281 20 16 2.3725 2.4024 -1.4267 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.4218 5.5068 1.3079 27 1 2.7436 6.1002 1.3080 28 1 5.7213 6.9890 2.3387 29 1 3.4474 9.3992 -0.4229 30 1 2.1064 8.2856 0.1797 31 1 3.2030 8.2029 2.4659 32 1 4.5441 9.3162 1.8632 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594911523.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:35 Heat of formation + Delta-G solvation = 66.034756 kcal Electronic energy + Delta-G solvation = -15703.349708 eV Core-core repulsion = 13110.611674 eV Total energy + Delta-G solvation = -2592.738034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68513 -37.03645 -34.56291 -32.00343 -30.45782 -27.88902 -26.52215 -24.92290 -23.45608 -21.42878 -20.58143 -19.65999 -18.80492 -17.13683 -16.40680 -15.55273 -14.97261 -14.45272 -14.13194 -13.85294 -13.77442 -13.30425 -13.16827 -12.88431 -12.29918 -11.99484 -11.96345 -11.49604 -11.12144 -10.83307 -10.69265 -10.49044 -10.23217 -10.22339 -10.14423 -9.90533 -9.71857 -9.47413 -8.67100 -8.51891 -8.37986 -7.26493 -6.43058 -4.20234 0.47184 0.82122 1.36106 1.83935 2.73539 2.76721 3.41112 3.41513 3.60635 4.15119 4.45690 4.74603 4.94722 4.99864 5.10290 5.19275 5.24303 5.53736 5.59063 5.66421 5.74654 5.91316 5.92326 6.11612 6.18425 6.45100 6.50544 6.75252 7.05086 7.14135 8.08934 8.31841 8.74938 8.76781 9.55954 10.95807 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.004901 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.358611 B = 5711.948577 C = 6035.486342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.013 3.987 4 N -0.249 5.249 5 N -0.280 5.280 6 C 0.009 3.991 7 S 0.064 5.936 8 C -0.062 4.062 9 C 0.025 3.975 10 C -0.576 4.576 11 H 0.057 0.943 12 C 0.032 3.968 13 N -0.898 5.898 14 Si 1.065 2.935 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.287 1.287 18 C -0.191 4.191 19 C -0.166 4.166 20 S 0.067 5.933 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.275 0.725 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.091 -10.367 -6.196 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.273 4.273 4 N -0.084 5.084 5 N -0.122 5.122 6 C -0.377 4.377 7 S 0.298 5.702 8 C -0.212 4.212 9 C 0.022 3.978 10 C -0.613 4.613 11 H 0.075 0.925 12 C -0.175 4.175 13 N -0.532 5.532 14 Si 0.893 3.107 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.213 1.213 18 C -0.228 4.228 19 C -0.207 4.207 20 S 0.306 5.694 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.248 -9.897 -6.684 14.514 hybrid contribution -1.801 -0.378 0.975 2.083 sum -10.050 -10.275 -5.709 15.465 Atomic orbital electron populations 1.21786 0.93438 1.02553 1.02837 1.20098 0.96653 0.86649 1.04460 1.29737 1.05557 1.02792 0.89235 1.70685 1.11311 0.99217 1.27174 1.71764 1.17650 1.06676 1.16106 1.32119 1.04131 1.07177 0.94242 1.85976 1.74100 0.95836 1.14251 1.23618 1.03307 1.01136 0.93154 1.18812 0.95114 0.83956 0.99871 1.21221 0.88783 1.54499 0.96809 0.92470 1.25792 1.03294 0.92831 0.95593 1.70749 1.28957 1.40502 1.12994 0.83595 0.75209 0.76523 0.75383 1.20729 1.21215 1.21319 1.22924 0.96390 1.03827 0.99666 1.22849 1.02766 1.03898 0.91144 1.85514 1.63757 1.07081 1.13000 0.91242 0.91877 0.92324 0.89434 0.88447 0.88465 0.91216 0.91363 0.89669 0.91014 0.91172 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.90 37.16 0.37 -0.82 16 2 C -0.04 -0.35 6.56 -27.88 -0.18 -0.53 16 3 C 0.01 0.18 7.04 -13.34 -0.09 0.09 16 4 N -0.25 -4.52 11.55 33.57 0.39 -4.14 16 5 N -0.28 -5.68 10.96 31.32 0.34 -5.34 16 6 C 0.01 0.17 7.85 52.12 0.41 0.58 16 7 S 0.06 1.26 22.00 -107.50 -2.37 -1.11 16 8 C -0.06 -1.38 4.93 37.16 0.18 -1.19 16 9 C 0.03 0.59 0.85 -155.66 -0.13 0.45 16 10 C -0.58 -15.15 8.47 -34.44 -0.29 -15.44 16 11 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 12 C 0.03 0.86 5.42 -17.82 -0.10 0.76 16 13 N -0.90 -25.87 13.61 55.43 0.75 -25.11 16 14 Si 1.07 24.35 29.91 -169.99 -5.08 19.27 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 18 C -0.19 -3.94 9.96 -26.73 -0.27 -4.20 16 19 C -0.17 -3.66 8.98 -26.73 -0.24 -3.90 16 20 S 0.07 0.98 23.54 -107.50 -2.53 -1.55 16 21 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 2.43 7.62 -51.91 -0.40 2.03 16 27 H 0.07 1.47 8.09 -51.92 -0.42 1.05 16 28 H 0.28 7.86 6.08 -40.82 -0.25 7.61 16 29 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 30 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -29.63 305.71 -8.30 -37.93 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.07 Total: -0.35 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -0.34 Total: -24.21 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 1.49 Total: -34.58 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.08 Total: 19.27 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -4.90 Total: -2.66 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.63 -8.30 -37.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594911523.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.964 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds