Wall clock time and date at job start Mon Mar 30 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00261 * 2 1 4 4 H 1.48503 * 109.46839 * 240.00126 * 3 2 1 5 5 H 1.48495 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46910 * 120.00286 * 3 2 1 7 7 C 1.37880 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00181 * 172.22845 * 7 2 1 9 9 C 1.50701 * 119.99991 * 352.22707 * 7 2 1 10 10 C 1.53001 * 115.55115 * 84.99108 * 9 7 2 11 11 O 1.42905 * 109.46830 * 39.68216 * 10 9 7 12 12 C 1.35955 * 116.99709 * 175.72284 * 11 10 9 13 13 C 1.38656 * 120.05768 * 5.18708 * 12 11 10 14 14 C 1.38283 * 119.95637 * 179.97438 * 13 12 11 15 15 Cl 1.73605 * 119.96435 * 179.97438 * 14 13 12 16 16 C 1.38378 * 120.07154 * 359.97438 * 14 13 12 17 17 C 1.38250 * 120.11007 * 359.97438 * 16 14 13 18 18 C 1.38328 * 120.04031 * 359.79031 * 17 16 14 19 19 F 1.35104 * 120.03247 * 180.22986 * 18 17 16 20 20 C 1.52996 * 117.51931 * 230.69429 * 9 7 2 21 21 C 1.52992 * 60.00196 * 107.48328 * 20 9 7 22 22 H 0.97001 * 119.99346 * 5.03535 * 1 2 3 23 23 H 1.08999 * 109.47289 * 159.68200 * 10 9 7 24 24 H 1.09002 * 109.47093 * 279.68705 * 10 9 7 25 25 H 1.07992 * 120.01744 * 359.94858 * 13 12 11 26 26 H 1.07999 * 119.94479 * 179.97438 * 16 14 13 27 27 H 1.08001 * 119.97870 * 180.02562 * 17 16 14 28 28 H 1.09003 * 117.49921 * 214.97193 * 20 9 7 29 29 H 1.09005 * 117.50072 * 359.97438 * 20 9 7 30 30 H 1.09002 * 117.50032 * 252.51104 * 21 20 9 31 31 H 1.08997 * 117.52164 * 107.48176 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0771 -1.1984 -0.1270 9 6 1.2614 -2.4933 0.1754 10 6 0.6710 -3.0940 -1.1019 11 8 1.5927 -2.9204 -2.1801 12 6 1.2590 -3.4799 -3.3734 13 6 0.0232 -4.0877 -3.5341 14 6 -0.3142 -4.6556 -4.7489 15 17 -1.8612 -5.4173 -4.9501 16 6 0.5799 -4.6175 -5.8044 17 6 1.8124 -4.0112 -5.6477 18 6 2.1528 -3.4374 -4.4359 19 9 3.3555 -2.8409 -4.2843 20 6 1.7767 -3.4639 1.2399 21 6 0.4787 -2.6890 1.4754 22 1 -0.4849 0.8369 -0.0737 23 1 0.4846 -4.1573 -0.9509 24 1 -0.2661 -2.5911 -1.3405 25 1 -0.6751 -4.1179 -2.7109 26 1 0.3144 -5.0620 -6.7522 27 1 2.5084 -3.9823 -6.4730 28 1 1.6952 -4.5304 1.0302 29 1 2.6538 -3.1631 1.8130 30 1 0.5015 -1.8783 2.2036 31 1 -0.4570 -3.2454 1.4205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596256433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:44 Heat of formation + Delta-G solvation = -41.103268 kcal Electronic energy + Delta-G solvation = -18131.338271 eV Core-core repulsion = 14933.404750 eV Total energy + Delta-G solvation = -3197.933521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.48201 -39.68697 -37.63227 -36.44060 -35.79353 -31.96299 -30.50580 -29.76196 -26.76755 -25.35046 -22.66479 -22.27977 -21.22060 -19.29909 -18.10307 -17.03073 -16.64914 -15.89730 -15.71039 -15.19274 -14.74576 -14.36951 -14.24335 -14.11249 -13.27816 -13.07742 -12.92217 -12.75722 -12.01084 -11.55712 -11.43309 -11.22562 -10.97207 -10.93893 -10.86112 -10.57311 -10.51310 -10.15657 -9.67914 -8.96063 -8.78698 -8.47697 -8.23490 -7.86077 -6.06520 -4.10220 1.03774 1.32140 2.07521 3.32479 3.36122 3.40154 3.54508 3.63530 4.40304 4.43602 4.72927 5.01560 5.13167 5.18761 5.21928 5.55270 5.65841 5.82585 6.03434 6.04268 6.12094 6.16245 6.20081 6.40167 6.53354 6.66102 6.76121 6.93165 7.19380 7.35401 7.88213 7.90841 8.37712 8.89596 9.54806 11.02702 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.005858 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.759430 B = 4778.428370 C = 5311.982762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.484 4.484 8 H 0.063 0.937 9 C 0.039 3.961 10 C 0.102 3.898 11 O -0.265 6.265 12 C 0.132 3.868 13 C -0.185 4.185 14 C -0.003 4.003 15 Cl -0.070 7.070 16 C -0.139 4.139 17 C -0.106 4.106 18 C 0.063 3.937 19 F -0.127 7.127 20 C -0.208 4.208 21 C -0.148 4.148 22 H 0.261 0.739 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.146 0.854 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -9.517 -9.374 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.521 4.521 8 H 0.081 0.919 9 C 0.038 3.962 10 C 0.027 3.973 11 O -0.176 6.176 12 C 0.082 3.918 13 C -0.205 4.205 14 C -0.030 4.030 15 Cl -0.042 7.042 16 C -0.158 4.158 17 C -0.125 4.125 18 C 0.043 3.957 19 F -0.105 7.105 20 C -0.245 4.245 21 C -0.185 4.185 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.165 0.835 26 H 0.156 0.844 27 H 0.164 0.836 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.435 -9.300 -9.223 13.176 hybrid contribution 0.131 0.887 0.024 0.897 sum -1.304 -8.413 -9.199 12.534 Atomic orbital electron populations 1.69946 1.05907 1.27010 1.49298 1.24958 0.94840 0.98987 0.94326 0.86655 0.79703 0.82892 0.78840 1.20061 1.21302 1.20122 1.20254 0.93407 0.88132 1.50328 0.91923 1.18700 0.98548 0.94618 0.84306 1.22644 0.91872 0.96755 0.86002 1.86420 1.47070 1.68639 1.15490 1.19160 0.91851 0.92796 0.87960 1.21087 0.97058 1.03833 0.98497 1.20624 0.87916 0.99419 0.95066 1.98361 1.28123 1.80154 1.97517 1.20623 0.93022 1.03516 0.98685 1.20844 0.97443 0.98476 0.95766 1.17073 0.82642 1.02351 0.93633 1.91523 1.41473 1.81425 1.96123 1.23119 0.98416 0.95581 1.07424 1.22554 0.92600 1.01235 1.02124 0.92897 0.94667 0.91386 0.83484 0.84355 0.83608 0.91506 0.89973 0.89443 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 12.97 55.43 0.72 -23.93 16 2 C 0.07 1.96 5.38 -17.82 -0.10 1.87 16 3 Si 0.89 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.48 -13.20 8.22 -34.44 -0.28 -13.48 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 C 0.04 0.94 1.77 -155.66 -0.28 0.66 16 10 C 0.10 2.23 4.82 37.16 0.18 2.41 16 11 O -0.27 -5.99 9.38 -19.60 -0.18 -6.17 16 12 C 0.13 2.48 6.69 -39.18 -0.26 2.21 16 13 C -0.19 -3.00 8.82 -39.41 -0.35 -3.35 16 14 C 0.00 -0.05 6.32 -39.51 -0.25 -0.30 16 15 Cl -0.07 -0.87 28.95 -51.86 -1.50 -2.37 16 16 C -0.14 -1.69 9.82 -39.53 -0.39 -2.08 16 17 C -0.11 -1.38 10.02 -39.54 -0.40 -1.77 16 18 C 0.06 1.08 7.31 -39.30 -0.29 0.79 16 19 F -0.13 -2.38 17.11 2.25 0.04 -2.34 16 20 C -0.21 -4.41 9.88 -26.74 -0.26 -4.68 16 21 C -0.15 -3.30 9.51 -26.74 -0.25 -3.56 16 22 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 23 H 0.04 0.67 7.45 -51.93 -0.39 0.29 16 24 H 0.07 1.56 7.69 -51.93 -0.40 1.16 16 25 H 0.15 2.34 6.32 -52.49 -0.33 2.01 16 26 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 29 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 294.06 15.07 4.43 4.43 Total: -1.00 -28.36 294.06 -7.64 -36.00 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.20 Total: -0.69 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -2.92 Total: -21.28 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.72 Total: -23.93 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.18 Total: -6.17 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.36 -7.64 -36.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596256433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.100 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds