Wall clock time and date at job start Mon Mar 30 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00261 * 2 1 4 4 H 1.48503 * 109.46839 * 240.00126 * 3 2 1 5 5 H 1.48495 * 109.46825 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46910 * 120.00286 * 3 2 1 7 7 C 1.37880 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00181 * 172.22845 * 7 2 1 9 9 C 1.50701 * 119.99991 * 352.22707 * 7 2 1 10 10 C 1.53001 * 115.55115 * 84.99108 * 9 7 2 11 11 O 1.42905 * 109.46830 * 39.68216 * 10 9 7 12 12 C 1.35955 * 116.99709 * 175.72284 * 11 10 9 13 13 C 1.38656 * 120.05768 * 5.18708 * 12 11 10 14 14 C 1.38283 * 119.95637 * 179.97438 * 13 12 11 15 15 Cl 1.73605 * 119.96435 * 179.97438 * 14 13 12 16 16 C 1.38378 * 120.07154 * 359.97438 * 14 13 12 17 17 C 1.38250 * 120.11007 * 359.97438 * 16 14 13 18 18 C 1.38328 * 120.04031 * 359.79031 * 17 16 14 19 19 F 1.35104 * 120.03247 * 180.22986 * 18 17 16 20 20 C 1.52996 * 117.51931 * 230.69429 * 9 7 2 21 21 C 1.52992 * 60.00196 * 107.48328 * 20 9 7 22 22 H 0.97001 * 119.99346 * 5.03535 * 1 2 3 23 23 H 1.08999 * 109.47289 * 159.68200 * 10 9 7 24 24 H 1.09002 * 109.47093 * 279.68705 * 10 9 7 25 25 H 1.07992 * 120.01744 * 359.94858 * 13 12 11 26 26 H 1.07999 * 119.94479 * 179.97438 * 16 14 13 27 27 H 1.08001 * 119.97870 * 180.02562 * 17 16 14 28 28 H 1.09003 * 117.49921 * 214.97193 * 20 9 7 29 29 H 1.09005 * 117.50072 * 359.97438 * 20 9 7 30 30 H 1.09002 * 117.50032 * 252.51104 * 21 20 9 31 31 H 1.08997 * 117.52164 * 107.48176 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0771 -1.1984 -0.1270 9 6 1.2614 -2.4933 0.1754 10 6 0.6710 -3.0940 -1.1019 11 8 1.5927 -2.9204 -2.1801 12 6 1.2590 -3.4799 -3.3734 13 6 0.0232 -4.0877 -3.5341 14 6 -0.3142 -4.6556 -4.7489 15 17 -1.8612 -5.4173 -4.9501 16 6 0.5799 -4.6175 -5.8044 17 6 1.8124 -4.0112 -5.6477 18 6 2.1528 -3.4374 -4.4359 19 9 3.3555 -2.8409 -4.2843 20 6 1.7767 -3.4639 1.2399 21 6 0.4787 -2.6890 1.4754 22 1 -0.4849 0.8369 -0.0737 23 1 0.4846 -4.1573 -0.9509 24 1 -0.2661 -2.5911 -1.3405 25 1 -0.6751 -4.1179 -2.7109 26 1 0.3144 -5.0620 -6.7522 27 1 2.5084 -3.9823 -6.4730 28 1 1.6952 -4.5304 1.0302 29 1 2.6538 -3.1631 1.8130 30 1 0.5015 -1.8783 2.2036 31 1 -0.4570 -3.2454 1.4205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596256433.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:44 Heat of formation + Delta-G solvation = -55.460473 kcal Electronic energy + Delta-G solvation = -18131.960846 eV Core-core repulsion = 14933.404750 eV Total energy + Delta-G solvation = -3198.556096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.83342 -41.03705 -39.04896 -37.82879 -37.15582 -34.02053 -31.67769 -31.02476 -28.39924 -27.34187 -23.91560 -23.52001 -22.96031 -21.13600 -19.44164 -18.55680 -17.95569 -17.55583 -17.16533 -16.65299 -16.42413 -16.01932 -15.76113 -15.40885 -14.86883 -14.40097 -14.19213 -14.11758 -13.59583 -13.20789 -12.98976 -12.88736 -12.67634 -12.44022 -12.35321 -12.07727 -12.00562 -11.72185 -11.49597 -10.87326 -10.49263 -10.04216 -9.94795 -9.18324 -8.13688 -6.21792 -0.13682 0.14883 0.99155 1.39173 1.39719 1.47159 2.21651 2.37349 2.42134 3.14195 3.18497 3.41038 3.63069 3.91990 3.96696 4.15242 4.31934 4.41274 4.47981 4.53233 4.66062 4.84707 4.90470 4.96131 5.00552 5.05701 5.16366 5.41985 5.54963 5.59456 5.75263 6.29015 6.51349 6.79843 7.44624 8.94362 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.005858 C = 0.005270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.759430 B = 4778.428370 C = 5311.982762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.498 4.498 8 H 0.044 0.956 9 C 0.000 4.000 10 C 0.117 3.883 11 O -0.303 6.303 12 C 0.094 3.906 13 C -0.189 4.189 14 C -0.006 4.006 15 Cl -0.052 7.052 16 C -0.118 4.118 17 C -0.087 4.087 18 C 0.038 3.962 19 F -0.145 7.145 20 C -0.186 4.186 21 C -0.145 4.145 22 H 0.261 0.739 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.143 0.857 26 H 0.180 0.820 27 H 0.184 0.816 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 -10.930 -11.178 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.536 4.536 8 H 0.062 0.938 9 C -0.001 4.001 10 C 0.042 3.958 11 O -0.216 6.216 12 C 0.046 3.954 13 C -0.209 4.209 14 C -0.033 4.033 15 Cl -0.023 7.023 16 C -0.136 4.136 17 C -0.106 4.106 18 C 0.018 3.982 19 F -0.124 7.124 20 C -0.223 4.223 21 C -0.182 4.182 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.161 0.839 26 H 0.197 0.803 27 H 0.202 0.798 28 H 0.114 0.886 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.749 -10.726 -11.031 15.485 hybrid contribution 0.196 1.222 0.457 1.320 sum -1.553 -9.503 -10.574 14.302 Atomic orbital electron populations 1.70029 1.06732 1.27402 1.50242 1.25567 0.95624 1.01582 0.94341 0.85847 0.78716 0.79868 0.78668 1.20498 1.20586 1.19439 1.20448 0.92836 0.90153 1.50145 0.93795 1.18890 1.00233 0.94852 0.86090 1.22330 0.90622 0.97584 0.85228 1.86327 1.47772 1.70534 1.16954 1.19485 0.93667 0.94915 0.87301 1.21075 0.96141 1.04060 0.99612 1.20788 0.88999 0.98840 0.94649 1.98372 1.26960 1.79640 1.97364 1.21126 0.91706 1.01335 0.99478 1.21273 0.98215 0.96204 0.94880 1.17572 0.82132 1.03681 0.94852 1.91469 1.42510 1.82044 1.96348 1.23129 0.97516 0.96629 1.05006 1.22473 0.94089 1.01118 1.00553 0.93036 0.92170 0.93560 0.83932 0.80256 0.79830 0.88560 0.90255 0.91590 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.67 12.97 21.45 0.28 -51.40 16 2 C 0.03 1.63 5.38 84.65 0.46 2.09 16 3 Si 0.94 44.72 29.55 68.60 2.03 46.75 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.50 -28.03 8.22 25.60 0.21 -27.82 16 8 H 0.04 2.55 7.83 -2.91 -0.02 2.53 16 9 C 0.00 -0.01 1.77 -52.93 -0.09 -0.11 16 10 C 0.12 5.24 4.82 71.98 0.35 5.59 16 11 O -0.30 -14.17 9.38 -93.04 -0.87 -15.04 16 12 C 0.09 3.58 6.69 22.53 0.15 3.73 16 13 C -0.19 -6.04 8.82 22.38 0.20 -5.84 16 14 C -0.01 -0.14 6.32 22.31 0.14 0.00 16 15 Cl -0.05 -1.15 28.95 -2.72 -0.08 -1.23 16 16 C -0.12 -2.39 9.82 22.31 0.22 -2.17 16 17 C -0.09 -1.98 10.02 22.29 0.22 -1.76 16 18 C 0.04 1.26 7.31 22.45 0.16 1.42 16 19 F -0.14 -5.50 17.11 44.97 0.77 -4.73 16 20 C -0.19 -7.76 9.88 30.59 0.30 -7.46 16 21 C -0.14 -6.50 9.51 30.59 0.29 -6.21 16 22 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 23 H 0.06 2.30 7.45 -2.39 -0.02 2.28 16 24 H 0.05 2.20 7.69 -2.39 -0.02 2.18 16 25 H 0.14 4.55 6.32 -2.91 -0.02 4.54 16 26 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 27 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.10 3.43 8.08 -2.39 -0.02 3.41 16 29 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 30 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -63.23 294.06 5.88 -57.35 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.15 Total: 6.83 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.61 Total: -38.54 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.28 Total: -51.40 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.87 Total: -15.04 kcal Atomic # 9 Polarization: -5.50 SS G_CDS: 0.77 Total: -4.73 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -63.23 5.88 -57.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596256433.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.893 kcal (2) G-P(sol) polarization free energy of solvation -63.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds