Wall clock time and date at job start Mon Mar 30 2020 01:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29419 * 125.69674 * 2 1 4 4 N 1.26395 * 116.47568 * 180.02562 * 3 2 1 5 5 C 1.29412 * 116.47720 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.69762 * 179.97438 * 5 4 3 7 7 S 1.81398 * 109.46749 * 90.02699 * 6 5 4 8 8 C 1.81409 * 102.99763 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.46786 * 179.97438 * 8 7 6 10 10 C 1.50705 * 115.54842 * 65.33415 * 9 8 7 11 11 H 1.07996 * 119.99868 * 265.64562 * 10 9 8 12 12 C 1.37878 * 119.99939 * 85.64759 * 10 9 8 13 13 N 1.31511 * 119.99959 * 353.68724 * 12 10 9 14 14 Si 1.86808 * 119.99822 * 173.68742 * 12 10 9 15 15 H 1.48495 * 109.47036 * 89.99972 * 14 12 10 16 16 H 1.48496 * 109.46979 * 209.99860 * 14 12 10 17 17 H 1.48502 * 109.46905 * 330.00169 * 14 12 10 18 18 C 1.52992 * 117.50250 * 279.65932 * 9 8 7 19 19 C 1.52996 * 117.49966 * 210.99646 * 9 8 7 20 20 S 1.71223 * 108.60935 * 0.22950 * 5 4 3 21 21 H 1.09003 * 109.47792 * 89.97498 * 1 2 3 22 22 H 1.09007 * 109.47165 * 209.97240 * 1 2 3 23 23 H 1.08999 * 109.46913 * 329.96819 * 1 2 3 24 24 H 1.08998 * 109.47081 * 330.02651 * 6 5 4 25 25 H 1.09002 * 109.46884 * 210.02517 * 6 5 4 26 26 H 1.08998 * 109.46883 * 300.00030 * 8 7 6 27 27 H 1.08996 * 109.46779 * 59.99959 * 8 7 6 28 28 H 0.97008 * 119.99886 * 175.02213 * 13 12 10 29 29 H 1.09001 * 117.49958 * 0.02562 * 18 9 8 30 30 H 1.09002 * 117.50086 * 145.02244 * 18 9 8 31 31 H 1.09001 * 117.50265 * 214.98486 * 19 9 8 32 32 H 1.08997 * 117.49819 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8485 -0.0005 5 6 3.8936 -0.3874 -0.0015 6 6 5.3233 -0.8641 -0.0028 7 16 5.8978 -1.0571 1.7070 8 6 7.6079 -1.6263 1.5010 9 6 8.2437 -1.8387 2.8763 10 6 7.6395 -2.9403 3.7085 11 1 6.8694 -2.7114 4.4303 12 6 8.0699 -4.2404 3.5486 13 7 8.9157 -4.5394 2.5869 14 14 7.4517 -5.5770 4.6978 15 1 6.2159 -6.1796 4.1367 16 1 8.4926 -6.6263 4.8420 17 1 7.1551 -4.9877 6.0282 18 6 8.7657 -0.6029 3.6118 19 6 9.7503 -1.6038 3.0019 20 16 2.5061 -1.3905 -0.0083 21 1 -0.3635 0.0004 -1.0276 22 1 -0.3634 -0.8903 0.5134 23 1 -0.3633 0.8897 0.5143 24 1 5.9492 -0.1342 -0.5162 25 1 5.3861 -1.8228 -0.5176 26 1 7.6139 -2.5658 0.9484 27 1 8.1763 -0.8770 0.9501 28 1 9.2744 -5.4381 2.5185 29 1 8.6558 0.3616 3.1161 30 1 8.6725 -0.5867 4.6977 31 1 10.3044 -2.2456 3.6868 32 1 10.2885 -1.2983 2.1047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596347809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:19 Heat of formation + Delta-G solvation = 79.147326 kcal Electronic energy + Delta-G solvation = -15506.154059 eV Core-core repulsion = 12913.984628 eV Total energy + Delta-G solvation = -2592.169431 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.26888 -36.61097 -33.87079 -31.97176 -31.10745 -27.86015 -27.07435 -25.36607 -24.51969 -21.14073 -20.03465 -19.35444 -19.14136 -16.45648 -16.09522 -15.47147 -14.95692 -14.66438 -14.18161 -13.78168 -13.72212 -13.51710 -13.22773 -12.94817 -12.73168 -12.51806 -11.90504 -11.49779 -11.02711 -10.93607 -10.52212 -10.47241 -10.27785 -10.21184 -9.84320 -9.73209 -9.68391 -9.20484 -8.85656 -8.47300 -8.06843 -6.95922 -6.08466 -4.13833 0.30444 0.85078 1.34271 2.05210 2.75730 3.27586 3.29350 3.35152 3.39787 3.89929 4.39150 4.41598 4.75196 4.99145 5.12527 5.20690 5.32665 5.35432 5.45190 5.55052 5.65786 5.90811 6.15846 6.34819 6.48468 6.69951 6.76944 7.03482 7.35140 7.45186 7.85094 8.35499 8.54351 8.88329 9.52713 11.00589 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.004840 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.067039 B = 5784.210680 C = 6509.453920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.032 4.032 3 N -0.261 5.261 4 N -0.253 5.253 5 C 0.014 3.986 6 C -0.034 4.034 7 S -0.212 6.212 8 C -0.028 4.028 9 C 0.053 3.947 10 C -0.485 4.485 11 H 0.062 0.938 12 C 0.073 3.927 13 N -0.881 5.881 14 Si 0.888 3.112 15 H -0.279 1.279 16 H -0.287 1.287 17 H -0.273 1.273 18 C -0.204 4.204 19 C -0.146 4.146 20 S 0.189 5.811 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.052 0.948 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 4.122 -7.291 14.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.311 4.311 3 N -0.100 5.100 4 N -0.092 5.092 5 C -0.265 4.265 6 C -0.185 4.185 7 S 0.015 5.985 8 C -0.177 4.177 9 C 0.051 3.949 10 C -0.523 4.523 11 H 0.080 0.920 12 C -0.130 4.130 13 N -0.518 5.518 14 Si 0.715 3.285 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.242 4.242 19 C -0.186 4.186 20 S 0.432 5.568 21 H 0.107 0.893 22 H 0.103 0.897 23 H 0.111 0.889 24 H 0.126 0.874 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.379 4.486 -6.526 14.696 hybrid contribution 0.622 -0.963 -0.556 1.274 sum -11.757 3.524 -7.082 14.171 Atomic orbital electron populations 1.20346 0.84054 1.04674 1.04096 1.29212 1.04280 0.92330 1.05281 1.71446 0.96925 1.26912 1.14720 1.71439 1.06278 1.16826 1.14607 1.28351 1.01752 0.92583 1.03770 1.21787 0.89685 1.04393 1.02655 1.87275 1.19506 1.88022 1.03698 1.23203 0.90153 1.01660 1.02637 1.18436 0.92321 0.93835 0.90287 1.20383 1.21604 0.90145 1.20183 0.91985 1.24935 0.95159 0.98180 0.94728 1.70004 1.31256 1.20423 1.30143 0.86667 0.78598 0.81639 0.81581 1.20526 1.21242 1.19814 1.23034 1.08134 0.93712 0.99306 1.22579 0.93706 1.01440 1.00842 1.83779 0.97193 1.11070 1.64720 0.89318 0.89698 0.88934 0.87447 0.87985 0.89472 0.92947 0.93028 0.91289 0.90224 0.89720 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.48 36.00 0.38 -0.15 16 2 C -0.03 -0.39 7.53 -13.30 -0.10 -0.49 16 3 N -0.26 -4.14 11.66 32.58 0.38 -3.76 16 4 N -0.25 -4.35 11.66 32.58 0.38 -3.97 16 5 C 0.01 0.22 6.79 -13.30 -0.09 0.13 16 6 C -0.03 -0.52 6.54 36.01 0.24 -0.29 16 7 S -0.21 -4.20 21.41 -107.50 -2.30 -6.50 16 8 C -0.03 -0.60 5.80 37.16 0.22 -0.38 16 9 C 0.05 1.27 1.34 -155.67 -0.21 1.06 16 10 C -0.49 -12.86 8.49 -34.44 -0.29 -13.15 16 11 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 12 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 13 N -0.88 -23.95 12.90 55.43 0.71 -23.24 16 14 Si 0.89 20.72 29.55 -169.99 -5.02 15.69 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.20 -4.43 9.96 -26.70 -0.27 -4.70 16 19 C -0.15 -3.30 9.40 -26.70 -0.25 -3.55 16 20 S 0.19 2.33 23.04 -107.50 -2.48 -0.15 16 21 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 23 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.10 1.40 8.14 -51.92 -0.42 0.97 16 26 H 0.09 1.99 8.14 -51.92 -0.42 1.57 16 27 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 28 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 31 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -29.73 308.90 -8.34 -38.07 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.19 Total: -1.12 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.48 Total: -19.69 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 1.47 Total: -30.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -4.78 Total: -6.65 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.73 -8.34 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596347809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.215 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds