Wall clock time and date at job start Mon Mar 30 2020 01:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29419 * 125.69674 * 2 1 4 4 N 1.26395 * 116.47568 * 180.02562 * 3 2 1 5 5 C 1.29412 * 116.47720 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.69762 * 179.97438 * 5 4 3 7 7 S 1.81398 * 109.46749 * 90.02699 * 6 5 4 8 8 C 1.81409 * 102.99763 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.46786 * 179.97438 * 8 7 6 10 10 C 1.50705 * 115.54842 * 65.33415 * 9 8 7 11 11 H 1.07996 * 119.99868 * 265.64562 * 10 9 8 12 12 C 1.37878 * 119.99939 * 85.64759 * 10 9 8 13 13 N 1.31511 * 119.99959 * 353.68724 * 12 10 9 14 14 Si 1.86808 * 119.99822 * 173.68742 * 12 10 9 15 15 H 1.48495 * 109.47036 * 89.99972 * 14 12 10 16 16 H 1.48496 * 109.46979 * 209.99860 * 14 12 10 17 17 H 1.48502 * 109.46905 * 330.00169 * 14 12 10 18 18 C 1.52992 * 117.50250 * 279.65932 * 9 8 7 19 19 C 1.52996 * 117.49966 * 210.99646 * 9 8 7 20 20 S 1.71223 * 108.60935 * 0.22950 * 5 4 3 21 21 H 1.09003 * 109.47792 * 89.97498 * 1 2 3 22 22 H 1.09007 * 109.47165 * 209.97240 * 1 2 3 23 23 H 1.08999 * 109.46913 * 329.96819 * 1 2 3 24 24 H 1.08998 * 109.47081 * 330.02651 * 6 5 4 25 25 H 1.09002 * 109.46884 * 210.02517 * 6 5 4 26 26 H 1.08998 * 109.46883 * 300.00030 * 8 7 6 27 27 H 1.08996 * 109.46779 * 59.99959 * 8 7 6 28 28 H 0.97008 * 119.99886 * 175.02213 * 13 12 10 29 29 H 1.09001 * 117.49958 * 0.02562 * 18 9 8 30 30 H 1.09002 * 117.50086 * 145.02244 * 18 9 8 31 31 H 1.09001 * 117.50265 * 214.98486 * 19 9 8 32 32 H 1.08997 * 117.49819 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8485 -0.0005 5 6 3.8936 -0.3874 -0.0015 6 6 5.3233 -0.8641 -0.0028 7 16 5.8978 -1.0571 1.7070 8 6 7.6079 -1.6263 1.5010 9 6 8.2437 -1.8387 2.8763 10 6 7.6395 -2.9403 3.7085 11 1 6.8694 -2.7114 4.4303 12 6 8.0699 -4.2404 3.5486 13 7 8.9157 -4.5394 2.5869 14 14 7.4517 -5.5770 4.6978 15 1 6.2159 -6.1796 4.1367 16 1 8.4926 -6.6263 4.8420 17 1 7.1551 -4.9877 6.0282 18 6 8.7657 -0.6029 3.6118 19 6 9.7503 -1.6038 3.0019 20 16 2.5061 -1.3905 -0.0083 21 1 -0.3635 0.0004 -1.0276 22 1 -0.3634 -0.8903 0.5134 23 1 -0.3633 0.8897 0.5143 24 1 5.9492 -0.1342 -0.5162 25 1 5.3861 -1.8228 -0.5176 26 1 7.6139 -2.5658 0.9484 27 1 8.1763 -0.8770 0.9501 28 1 9.2744 -5.4381 2.5185 29 1 8.6558 0.3616 3.1161 30 1 8.6725 -0.5867 4.6977 31 1 10.3044 -2.2456 3.6868 32 1 10.2885 -1.2983 2.1047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596347809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:18 Heat of formation + Delta-G solvation = 62.479511 kcal Electronic energy + Delta-G solvation = -15506.876829 eV Core-core repulsion = 12913.984628 eV Total energy + Delta-G solvation = -2592.892201 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.37227 -38.42133 -34.88910 -33.98026 -32.07610 -29.50729 -28.19286 -27.32406 -25.55672 -22.92263 -21.36830 -20.76268 -20.39038 -18.21711 -17.39492 -16.81435 -16.59630 -16.15142 -15.71181 -15.16607 -15.00318 -14.86069 -14.39280 -14.06386 -13.83694 -13.56302 -13.41606 -13.16206 -12.96297 -12.80940 -12.35257 -12.03881 -11.61576 -11.49269 -11.27690 -11.26350 -10.74840 -10.68576 -10.52393 -10.38757 -9.86529 -8.51781 -8.09735 -6.19612 -0.76729 -0.15219 0.29995 0.72363 1.42171 1.44926 1.53698 1.56422 1.79957 2.45575 2.84582 3.19247 3.48311 3.54751 3.71384 4.11473 4.19267 4.23956 4.41492 4.43561 4.60809 4.63005 4.69242 4.73146 4.94122 5.00965 5.07070 5.24049 5.57876 5.63208 5.79160 6.39776 6.83877 7.45688 7.48526 8.98415 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.004840 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.067039 B = 5784.210680 C = 6509.453920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.019 4.019 3 N -0.300 5.300 4 N -0.280 5.280 5 C -0.016 4.016 6 C -0.017 4.017 7 S -0.250 6.250 8 C -0.016 4.016 9 C 0.027 3.973 10 C -0.497 4.497 11 H 0.045 0.955 12 C 0.034 3.966 13 N -0.903 5.903 14 Si 0.940 3.060 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.275 1.275 18 C -0.187 4.187 19 C -0.146 4.146 20 S 0.235 5.765 21 H 0.113 0.887 22 H 0.109 0.891 23 H 0.098 0.902 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.260 0.740 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 3.917 -7.903 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.298 4.298 3 N -0.138 5.138 4 N -0.120 5.120 5 C -0.295 4.295 6 C -0.168 4.168 7 S -0.023 6.023 8 C -0.164 4.164 9 C 0.026 3.974 10 C -0.535 4.535 11 H 0.063 0.937 12 C -0.167 4.167 13 N -0.541 5.541 14 Si 0.766 3.234 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.224 4.224 19 C -0.186 4.186 20 S 0.479 5.521 21 H 0.131 0.869 22 H 0.127 0.873 23 H 0.117 0.883 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.040 4.283 -7.130 16.319 hybrid contribution 0.982 -0.882 -0.397 1.378 sum -13.058 3.401 -7.526 15.451 Atomic orbital electron populations 1.20674 0.80642 1.06140 1.06066 1.30018 1.06186 0.91630 1.01990 1.71421 0.96829 1.28416 1.17175 1.71389 1.07410 1.18091 1.15068 1.28307 1.02584 0.93225 1.05426 1.21722 0.90142 1.05669 0.99241 1.87257 1.18884 1.87808 1.08357 1.22898 0.91325 1.01209 1.01007 1.18554 0.92948 0.94360 0.91559 1.20522 1.21343 0.91370 1.20257 0.93681 1.25502 0.95459 0.99791 0.95915 1.70078 1.32161 1.20743 1.31095 0.85845 0.78216 0.79461 0.79853 1.20129 1.20810 1.19956 1.23005 1.06450 0.93929 0.99052 1.22509 0.93338 1.01584 1.01183 1.83574 0.95179 1.09811 1.63521 0.86872 0.87281 0.88340 0.86596 0.86220 0.91524 0.91204 0.93061 0.89277 0.90694 0.91796 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.48 71.24 0.75 -0.12 16 2 C -0.02 -0.43 7.53 88.46 0.67 0.23 16 3 N -0.30 -9.17 11.66 -50.84 -0.59 -9.76 16 4 N -0.28 -9.47 11.66 -50.84 -0.59 -10.07 16 5 C -0.02 -0.48 6.79 88.47 0.60 0.12 16 6 C -0.02 -0.50 6.54 71.24 0.47 -0.03 16 7 S -0.25 -9.80 21.41 -56.49 -1.21 -11.01 16 8 C -0.02 -0.67 5.80 71.98 0.42 -0.25 16 9 C 0.03 1.31 1.34 -52.93 -0.07 1.24 16 10 C -0.50 -26.56 8.49 25.60 0.22 -26.34 16 11 H 0.04 2.50 7.82 -2.91 -0.02 2.48 16 12 C 0.03 1.81 5.39 84.66 0.46 2.26 16 13 N -0.90 -49.29 12.90 21.45 0.28 -49.01 16 14 Si 0.94 42.55 29.55 68.60 2.03 44.58 16 15 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C -0.19 -7.98 9.96 30.62 0.30 -7.67 16 19 C -0.15 -6.60 9.40 30.62 0.29 -6.31 16 20 S 0.24 5.30 23.04 -56.49 -1.30 4.00 16 21 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 25 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 26 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 27 H 0.07 2.65 8.09 -2.39 -0.02 2.63 16 28 H 0.26 13.64 8.32 -92.70 -0.77 12.87 16 29 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 30 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.08 3.29 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -63.98 308.90 3.81 -60.17 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.11 Total: 7.98 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 4.09 Total: -36.88 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -0.91 Total: -68.84 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -4.49 SS G_CDS: -2.51 Total: -7.00 kcal Total: -63.98 3.81 -60.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596347809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.649 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds