Wall clock time and date at job start Mon Mar 30 2020 00:51:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 119.99611 * 2 1
4 4 H 1.48498 * 109.47117 * 274.49193 * 3 2 1
5 5 H 1.48498 * 109.47350 * 34.49771 * 3 2 1
6 6 H 1.48505 * 109.47234 * 154.49511 * 3 2 1
7 7 C 1.37877 * 120.00400 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99599 * 4.65082 * 7 2 1
9 9 C 1.50698 * 120.00042 * 184.65473 * 7 2 1
10 10 C 1.52997 * 115.55019 * 84.84061 * 9 7 2
11 11 O 1.42899 * 109.47295 * 65.16365 * 10 9 7
12 12 C 1.35897 * 117.00161 * 184.87490 * 11 10 9
13 13 C 1.38719 * 120.03568 * 354.69016 * 12 11 10
14 14 C 1.38349 * 119.94709 * 179.97438 * 13 12 11
15 15 F 1.35108 * 119.99208 * 180.02562 * 14 13 12
16 16 C 1.38495 * 120.01970 * 0.02562 * 14 13 12
17 17 C 1.38325 * 120.06964 * 359.97438 * 16 14 13
18 18 Cl 1.73608 * 119.97482 * 179.97438 * 17 16 14
19 19 C 1.38295 * 120.05614 * 0.02562 * 17 16 14
20 20 C 1.52997 * 117.49659 * 230.51216 * 9 7 2
21 21 C 1.53001 * 117.49762 * 299.16975 * 9 7 2
22 22 H 0.96997 * 120.00289 * 359.97438 * 1 2 3
23 23 H 1.09006 * 109.47450 * 305.16355 * 10 9 7
24 24 H 1.08999 * 109.47116 * 185.16629 * 10 9 7
25 25 H 1.08007 * 120.02783 * 359.97438 * 13 12 11
26 26 H 1.07994 * 119.96809 * 180.27901 * 16 14 13
27 27 H 1.07999 * 120.01134 * 179.97438 * 19 17 16
28 28 H 1.09009 * 117.49629 * 215.00579 * 20 9 7
29 29 H 1.08995 * 117.50020 * 0.02562 * 20 9 7
30 30 H 1.09004 * 117.49927 * 359.97438 * 21 9 7
31 31 H 1.08997 * 117.49964 * 144.97416 * 21 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4016 2.1013 -1.3958
5 1 1.4973 2.6234 0.7929
6 1 3.5910 1.4148 0.6029
7 6 2.0046 -1.1940 0.0005
8 1 1.4673 -2.1278 -0.0749
9 6 3.5079 -1.1960 0.1064
10 6 4.0693 -1.1280 1.5280
11 8 3.7119 -2.3151 2.2387
12 6 4.0471 -2.3712 3.5544
13 6 4.8023 -1.3556 4.1224
14 6 5.1422 -1.4142 5.4622
15 9 5.8772 -0.4253 6.0164
16 6 4.7292 -2.4864 6.2355
17 6 3.9761 -3.4995 5.6700
18 17 3.4603 -4.8426 6.6415
19 6 3.6347 -3.4439 4.3310
20 6 4.2874 -2.0172 -0.9225
21 6 4.2949 -0.4885 -0.9985
22 1 -0.4850 0.8400 0.0004
23 1 3.6562 -0.2593 2.0408
24 1 5.1552 -1.0427 1.4862
25 1 5.1247 -0.5197 3.5191
26 1 4.9911 -2.5291 7.2823
27 1 3.0471 -4.2355 3.8900
28 1 5.2003 -2.5092 -0.5866
29 1 3.7130 -2.5557 -1.6762
30 1 3.7253 -0.0219 -1.8023
31 1 5.2124 0.0258 -0.7126
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600674629.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:51:32
Heat of formation + Delta-G solvation = -38.615891 kcal
Electronic energy + Delta-G solvation = -17931.145859 eV
Core-core repulsion = 14733.320198 eV
Total energy + Delta-G solvation = -3197.825660 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 270.056 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-49.01069 -39.95957 -37.85323 -36.69539 -35.90283 -32.17846 -30.58719 -30.05576
-27.18529 -25.44161 -22.79216 -22.47474 -21.74654 -19.23342 -18.48115 -17.09495
-16.34960 -16.12364 -15.88013 -15.77778 -15.36249 -14.83488 -14.52461 -14.23842
-13.69514 -13.20346 -12.94706 -12.74508 -12.44439 -11.75326 -11.68330 -11.55399
-11.20093 -11.17446 -10.95237 -10.63071 -10.45382 -10.24536 -9.67857 -9.19595
-8.83500 -8.71375 -8.60502 -8.20503 -6.18273 -4.21522 0.93497 1.18407
1.86009 3.19389 3.28923 3.30790 3.40773 3.52496 4.14703 4.32183
4.79863 4.85164 4.95457 5.00070 5.07015 5.09240 5.46449 5.68253
5.76327 5.80209 5.90502 6.00311 6.04519 6.09931 6.21733 6.33438
6.54987 6.57693 6.84788 6.98790 7.60342 7.68557 8.42809 8.87478
9.43177 10.93548
Molecular weight = 270.06amu
Principal moments of inertia in cm(-1)
A = 0.021151 B = 0.005268 C = 0.004994
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1323.490060 B = 5313.651731 C = 5604.898788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.892 5.892
2 C 0.077 3.923
3 Si 0.875 3.125
4 H -0.277 1.277
5 H -0.291 1.291
6 H -0.260 1.260
7 C -0.483 4.483
8 H 0.081 0.919
9 C -0.004 4.004
10 C 0.095 3.905
11 O -0.276 6.276
12 C 0.191 3.809
13 C -0.250 4.250
14 C 0.153 3.847
15 F -0.133 7.133
16 C -0.200 4.200
17 C 0.031 3.969
18 Cl -0.057 7.057
19 C -0.159 4.159
20 C -0.173 4.173
21 C -0.189 4.189
22 H 0.266 0.734
23 H 0.063 0.937
24 H 0.043 0.957
25 H 0.145 0.855
26 H 0.143 0.857
27 H 0.149 0.851
28 H 0.075 0.925
29 H 0.090 0.910
30 H 0.093 0.907
31 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.473 -4.234 9.977 15.071
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.126 4.126
3 Si 0.702 3.298
4 H -0.203 1.203
5 H -0.218 1.218
6 H -0.185 1.185
7 C -0.520 4.520
8 H 0.099 0.901
9 C -0.005 4.005
10 C 0.020 3.980
11 O -0.187 6.187
12 C 0.142 3.858
13 C -0.270 4.270
14 C 0.133 3.867
15 F -0.112 7.112
16 C -0.220 4.220
17 C 0.005 3.995
18 Cl -0.028 7.028
19 C -0.179 4.179
20 C -0.210 4.210
21 C -0.226 4.226
22 H 0.076 0.924
23 H 0.081 0.919
24 H 0.061 0.939
25 H 0.163 0.837
26 H 0.161 0.839
27 H 0.167 0.833
28 H 0.093 0.907
29 H 0.109 0.891
30 H 0.111 0.889
31 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 10.168 -4.329 9.933 14.859
hybrid contribution 0.571 1.344 0.218 1.476
sum 10.739 -2.985 10.151 15.076
Atomic orbital electron populations
1.69891 1.06295 1.27153 1.49567 1.25003 0.94628 0.98934 0.94024
0.86921 0.80520 0.83746 0.78565 1.20252 1.21803 1.18459 1.20216
0.86211 0.94760 1.50861 0.90066 1.19266 0.95218 1.01183 0.84788
1.22914 0.96542 0.84745 0.93788 1.86279 1.74689 1.41262 1.16428
1.18653 0.89973 0.91941 0.85239 1.21362 1.07161 1.03226 0.95251
1.17056 0.92903 0.85897 0.90865 1.91514 1.74396 1.59678 1.85610
1.20674 1.05196 0.94711 1.01394 1.20115 0.98016 0.90163 0.91254
1.98377 1.89473 1.44445 1.70463 1.20307 1.05667 1.00530 0.91369
1.22846 1.01308 0.92685 1.04147 1.23011 1.01240 0.95294 1.03070
0.92439 0.91905 0.93900 0.83684 0.83945 0.83275 0.90694 0.89109
0.88856 0.90738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16
2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16
3 Si 0.87 20.59 24.94 -169.99 -4.24 16.35 16
4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
6 H -0.26 -5.63 5.69 56.52 0.32 -5.31 16
7 C -0.48 -13.04 9.36 -34.44 -0.32 -13.36 16
8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16
9 C 0.00 -0.08 1.03 -155.66 -0.16 -0.24 16
10 C 0.09 1.88 4.18 37.16 0.16 2.03 16
11 O -0.28 -5.44 10.06 -19.42 -0.20 -5.64 16
12 C 0.19 3.20 6.68 -39.23 -0.26 2.94 16
13 C -0.25 -3.84 9.01 -39.36 -0.35 -4.19 16
14 C 0.15 2.14 7.30 -39.45 -0.29 1.85 16
15 F -0.13 -1.84 17.27 2.25 0.04 -1.80 16
16 C -0.20 -2.55 9.81 -39.45 -0.39 -2.94 16
17 C 0.03 0.42 6.32 -39.53 -0.25 0.17 16
18 Cl -0.06 -0.65 28.95 -51.86 -1.50 -2.16 16
19 C -0.16 -2.38 9.77 -39.39 -0.38 -2.76 16
20 C -0.17 -3.33 9.96 -26.70 -0.27 -3.60 16
21 C -0.19 -3.73 7.32 -26.69 -0.20 -3.92 16
22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16
23 H 0.06 1.28 6.54 -51.93 -0.34 0.94 16
24 H 0.04 0.73 7.66 -51.93 -0.40 0.33 16
25 H 0.15 2.13 6.33 -52.48 -0.33 1.80 16
26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16
27 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16
28 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16
29 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16
30 H 0.09 1.92 7.13 -51.93 -0.37 1.55 16
31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16
LS Contribution 285.84 15.07 4.31 4.31
Total: -1.00 -28.14 285.84 -6.82 -34.96
By element:
Atomic # 1 Polarization: 4.85 SS G_CDS: -3.19 Total: 1.66 kcal
Atomic # 6 Polarization: -19.18 SS G_CDS: -2.81 Total: -21.99 kcal
Atomic # 7 Polarization: -26.46 SS G_CDS: 0.77 Total: -25.68 kcal
Atomic # 8 Polarization: -5.44 SS G_CDS: -0.20 Total: -5.64 kcal
Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -4.24 Total: 16.35 kcal
Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -28.14 -6.82 -34.96 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600674629.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.659 kcal
(2) G-P(sol) polarization free energy of solvation -28.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.616 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds