Wall clock time and date at job start Mon Mar 30 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99611 * 2 1 4 4 H 1.48498 * 109.47117 * 274.49193 * 3 2 1 5 5 H 1.48498 * 109.47350 * 34.49771 * 3 2 1 6 6 H 1.48505 * 109.47234 * 154.49511 * 3 2 1 7 7 C 1.37877 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99599 * 4.65082 * 7 2 1 9 9 C 1.50698 * 120.00042 * 184.65473 * 7 2 1 10 10 C 1.52997 * 115.55019 * 84.84061 * 9 7 2 11 11 O 1.42899 * 109.47295 * 65.16365 * 10 9 7 12 12 C 1.35897 * 117.00161 * 184.87490 * 11 10 9 13 13 C 1.38719 * 120.03568 * 354.69016 * 12 11 10 14 14 C 1.38349 * 119.94709 * 179.97438 * 13 12 11 15 15 F 1.35108 * 119.99208 * 180.02562 * 14 13 12 16 16 C 1.38495 * 120.01970 * 0.02562 * 14 13 12 17 17 C 1.38325 * 120.06964 * 359.97438 * 16 14 13 18 18 Cl 1.73608 * 119.97482 * 179.97438 * 17 16 14 19 19 C 1.38295 * 120.05614 * 0.02562 * 17 16 14 20 20 C 1.52997 * 117.49659 * 230.51216 * 9 7 2 21 21 C 1.53001 * 117.49762 * 299.16975 * 9 7 2 22 22 H 0.96997 * 120.00289 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47450 * 305.16355 * 10 9 7 24 24 H 1.08999 * 109.47116 * 185.16629 * 10 9 7 25 25 H 1.08007 * 120.02783 * 359.97438 * 13 12 11 26 26 H 1.07994 * 119.96809 * 180.27901 * 16 14 13 27 27 H 1.07999 * 120.01134 * 179.97438 * 19 17 16 28 28 H 1.09009 * 117.49629 * 215.00579 * 20 9 7 29 29 H 1.08995 * 117.50020 * 0.02562 * 20 9 7 30 30 H 1.09004 * 117.49927 * 359.97438 * 21 9 7 31 31 H 1.08997 * 117.49964 * 144.97416 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4016 2.1013 -1.3958 5 1 1.4973 2.6234 0.7929 6 1 3.5910 1.4148 0.6029 7 6 2.0046 -1.1940 0.0005 8 1 1.4673 -2.1278 -0.0749 9 6 3.5079 -1.1960 0.1064 10 6 4.0693 -1.1280 1.5280 11 8 3.7119 -2.3151 2.2387 12 6 4.0471 -2.3712 3.5544 13 6 4.8023 -1.3556 4.1224 14 6 5.1422 -1.4142 5.4622 15 9 5.8772 -0.4253 6.0164 16 6 4.7292 -2.4864 6.2355 17 6 3.9761 -3.4995 5.6700 18 17 3.4603 -4.8426 6.6415 19 6 3.6347 -3.4439 4.3310 20 6 4.2874 -2.0172 -0.9225 21 6 4.2949 -0.4885 -0.9985 22 1 -0.4850 0.8400 0.0004 23 1 3.6562 -0.2593 2.0408 24 1 5.1552 -1.0427 1.4862 25 1 5.1247 -0.5197 3.5191 26 1 4.9911 -2.5291 7.2823 27 1 3.0471 -4.2355 3.8900 28 1 5.2003 -2.5092 -0.5866 29 1 3.7130 -2.5557 -1.6762 30 1 3.7253 -0.0219 -1.8023 31 1 5.2124 0.0258 -0.7126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600674629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:32 Heat of formation + Delta-G solvation = -38.615891 kcal Electronic energy + Delta-G solvation = -17931.145859 eV Core-core repulsion = 14733.320198 eV Total energy + Delta-G solvation = -3197.825660 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.01069 -39.95957 -37.85323 -36.69539 -35.90283 -32.17846 -30.58719 -30.05576 -27.18529 -25.44161 -22.79216 -22.47474 -21.74654 -19.23342 -18.48115 -17.09495 -16.34960 -16.12364 -15.88013 -15.77778 -15.36249 -14.83488 -14.52461 -14.23842 -13.69514 -13.20346 -12.94706 -12.74508 -12.44439 -11.75326 -11.68330 -11.55399 -11.20093 -11.17446 -10.95237 -10.63071 -10.45382 -10.24536 -9.67857 -9.19595 -8.83500 -8.71375 -8.60502 -8.20503 -6.18273 -4.21522 0.93497 1.18407 1.86009 3.19389 3.28923 3.30790 3.40773 3.52496 4.14703 4.32183 4.79863 4.85164 4.95457 5.00070 5.07015 5.09240 5.46449 5.68253 5.76327 5.80209 5.90502 6.00311 6.04519 6.09931 6.21733 6.33438 6.54987 6.57693 6.84788 6.98790 7.60342 7.68557 8.42809 8.87478 9.43177 10.93548 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.005268 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.490060 B = 5313.651731 C = 5604.898788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.483 4.483 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.095 3.905 11 O -0.276 6.276 12 C 0.191 3.809 13 C -0.250 4.250 14 C 0.153 3.847 15 F -0.133 7.133 16 C -0.200 4.200 17 C 0.031 3.969 18 Cl -0.057 7.057 19 C -0.159 4.159 20 C -0.173 4.173 21 C -0.189 4.189 22 H 0.266 0.734 23 H 0.063 0.937 24 H 0.043 0.957 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.149 0.851 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.473 -4.234 9.977 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.520 4.520 8 H 0.099 0.901 9 C -0.005 4.005 10 C 0.020 3.980 11 O -0.187 6.187 12 C 0.142 3.858 13 C -0.270 4.270 14 C 0.133 3.867 15 F -0.112 7.112 16 C -0.220 4.220 17 C 0.005 3.995 18 Cl -0.028 7.028 19 C -0.179 4.179 20 C -0.210 4.210 21 C -0.226 4.226 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.163 0.837 26 H 0.161 0.839 27 H 0.167 0.833 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.168 -4.329 9.933 14.859 hybrid contribution 0.571 1.344 0.218 1.476 sum 10.739 -2.985 10.151 15.076 Atomic orbital electron populations 1.69891 1.06295 1.27153 1.49567 1.25003 0.94628 0.98934 0.94024 0.86921 0.80520 0.83746 0.78565 1.20252 1.21803 1.18459 1.20216 0.86211 0.94760 1.50861 0.90066 1.19266 0.95218 1.01183 0.84788 1.22914 0.96542 0.84745 0.93788 1.86279 1.74689 1.41262 1.16428 1.18653 0.89973 0.91941 0.85239 1.21362 1.07161 1.03226 0.95251 1.17056 0.92903 0.85897 0.90865 1.91514 1.74396 1.59678 1.85610 1.20674 1.05196 0.94711 1.01394 1.20115 0.98016 0.90163 0.91254 1.98377 1.89473 1.44445 1.70463 1.20307 1.05667 1.00530 0.91369 1.22846 1.01308 0.92685 1.04147 1.23011 1.01240 0.95294 1.03070 0.92439 0.91905 0.93900 0.83684 0.83945 0.83275 0.90694 0.89109 0.88856 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.59 24.94 -169.99 -4.24 16.35 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.26 -5.63 5.69 56.52 0.32 -5.31 16 7 C -0.48 -13.04 9.36 -34.44 -0.32 -13.36 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 9 C 0.00 -0.08 1.03 -155.66 -0.16 -0.24 16 10 C 0.09 1.88 4.18 37.16 0.16 2.03 16 11 O -0.28 -5.44 10.06 -19.42 -0.20 -5.64 16 12 C 0.19 3.20 6.68 -39.23 -0.26 2.94 16 13 C -0.25 -3.84 9.01 -39.36 -0.35 -4.19 16 14 C 0.15 2.14 7.30 -39.45 -0.29 1.85 16 15 F -0.13 -1.84 17.27 2.25 0.04 -1.80 16 16 C -0.20 -2.55 9.81 -39.45 -0.39 -2.94 16 17 C 0.03 0.42 6.32 -39.53 -0.25 0.17 16 18 Cl -0.06 -0.65 28.95 -51.86 -1.50 -2.16 16 19 C -0.16 -2.38 9.77 -39.39 -0.38 -2.76 16 20 C -0.17 -3.33 9.96 -26.70 -0.27 -3.60 16 21 C -0.19 -3.73 7.32 -26.69 -0.20 -3.92 16 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.06 1.28 6.54 -51.93 -0.34 0.94 16 24 H 0.04 0.73 7.66 -51.93 -0.40 0.33 16 25 H 0.15 2.13 6.33 -52.48 -0.33 1.80 16 26 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 29 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 30 H 0.09 1.92 7.13 -51.93 -0.37 1.55 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -28.14 285.84 -6.82 -34.96 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -3.19 Total: 1.66 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.81 Total: -21.99 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.77 Total: -25.68 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.20 Total: -5.64 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.24 Total: 16.35 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.14 -6.82 -34.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600674629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.659 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds