Wall clock time and date at job start Mon Mar 30 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99611 * 2 1 4 4 H 1.48498 * 109.47117 * 274.49193 * 3 2 1 5 5 H 1.48498 * 109.47350 * 34.49771 * 3 2 1 6 6 H 1.48505 * 109.47234 * 154.49511 * 3 2 1 7 7 C 1.37877 * 120.00400 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99599 * 4.65082 * 7 2 1 9 9 C 1.50698 * 120.00042 * 184.65473 * 7 2 1 10 10 C 1.52997 * 115.55019 * 84.84061 * 9 7 2 11 11 O 1.42899 * 109.47295 * 65.16365 * 10 9 7 12 12 C 1.35897 * 117.00161 * 184.87490 * 11 10 9 13 13 C 1.38719 * 120.03568 * 354.69016 * 12 11 10 14 14 C 1.38349 * 119.94709 * 179.97438 * 13 12 11 15 15 F 1.35108 * 119.99208 * 180.02562 * 14 13 12 16 16 C 1.38495 * 120.01970 * 0.02562 * 14 13 12 17 17 C 1.38325 * 120.06964 * 359.97438 * 16 14 13 18 18 Cl 1.73608 * 119.97482 * 179.97438 * 17 16 14 19 19 C 1.38295 * 120.05614 * 0.02562 * 17 16 14 20 20 C 1.52997 * 117.49659 * 230.51216 * 9 7 2 21 21 C 1.53001 * 117.49762 * 299.16975 * 9 7 2 22 22 H 0.96997 * 120.00289 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.47450 * 305.16355 * 10 9 7 24 24 H 1.08999 * 109.47116 * 185.16629 * 10 9 7 25 25 H 1.08007 * 120.02783 * 359.97438 * 13 12 11 26 26 H 1.07994 * 119.96809 * 180.27901 * 16 14 13 27 27 H 1.07999 * 120.01134 * 179.97438 * 19 17 16 28 28 H 1.09009 * 117.49629 * 215.00579 * 20 9 7 29 29 H 1.08995 * 117.50020 * 0.02562 * 20 9 7 30 30 H 1.09004 * 117.49927 * 359.97438 * 21 9 7 31 31 H 1.08997 * 117.49964 * 144.97416 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4016 2.1013 -1.3958 5 1 1.4973 2.6234 0.7929 6 1 3.5910 1.4148 0.6029 7 6 2.0046 -1.1940 0.0005 8 1 1.4673 -2.1278 -0.0749 9 6 3.5079 -1.1960 0.1064 10 6 4.0693 -1.1280 1.5280 11 8 3.7119 -2.3151 2.2387 12 6 4.0471 -2.3712 3.5544 13 6 4.8023 -1.3556 4.1224 14 6 5.1422 -1.4142 5.4622 15 9 5.8772 -0.4253 6.0164 16 6 4.7292 -2.4864 6.2355 17 6 3.9761 -3.4995 5.6700 18 17 3.4603 -4.8426 6.6415 19 6 3.6347 -3.4439 4.3310 20 6 4.2874 -2.0172 -0.9225 21 6 4.2949 -0.4885 -0.9985 22 1 -0.4850 0.8400 0.0004 23 1 3.6562 -0.2593 2.0408 24 1 5.1552 -1.0427 1.4862 25 1 5.1247 -0.5197 3.5191 26 1 4.9911 -2.5291 7.2823 27 1 3.0471 -4.2355 3.8900 28 1 5.2003 -2.5092 -0.5866 29 1 3.7130 -2.5557 -1.6762 30 1 3.7253 -0.0219 -1.8023 31 1 5.2124 0.0258 -0.7126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600674629.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:32 Heat of formation + Delta-G solvation = -54.221341 kcal Electronic energy + Delta-G solvation = -17931.822562 eV Core-core repulsion = 14733.320198 eV Total energy + Delta-G solvation = -3198.502364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.09023 -41.22430 -39.18946 -37.99996 -37.13050 -34.25972 -31.72061 -31.22578 -28.73511 -27.35527 -23.95015 -23.70366 -23.25768 -20.98136 -19.69864 -18.68323 -17.72636 -17.32702 -17.22925 -17.01252 -16.78766 -16.22943 -15.95325 -15.56019 -15.02824 -14.78465 -14.41993 -14.14571 -13.90047 -13.17973 -13.10987 -12.81566 -12.72394 -12.52144 -12.23526 -12.14454 -11.97855 -11.73019 -11.47808 -11.00175 -10.60481 -10.38307 -9.92901 -9.41386 -8.29749 -6.37749 -0.18456 0.05134 0.81692 1.35279 1.36968 1.48686 2.13457 2.32365 2.35608 3.01752 3.04490 3.27584 3.75401 3.81016 3.90042 3.94673 4.00584 4.20945 4.29933 4.36895 4.51208 4.65865 4.81169 4.83819 4.95134 5.00800 5.05070 5.25408 5.42751 5.46437 5.66141 6.27156 6.38859 6.70907 7.30979 8.86293 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.005268 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.490060 B = 5313.651731 C = 5604.898788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.299 1.299 6 H -0.223 1.223 7 C -0.484 4.484 8 H 0.026 0.974 9 C -0.039 4.039 10 C 0.101 3.899 11 O -0.305 6.305 12 C 0.165 3.835 13 C -0.251 4.251 14 C 0.150 3.850 15 F -0.130 7.130 16 C -0.184 4.184 17 C 0.032 3.968 18 Cl -0.039 7.039 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.175 4.175 22 H 0.265 0.735 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.152 0.848 26 H 0.170 0.830 27 H 0.148 0.852 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.472 -3.485 11.254 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.180 4.180 3 Si 0.760 3.240 4 H -0.193 1.193 5 H -0.226 1.226 6 H -0.145 1.145 7 C -0.521 4.521 8 H 0.044 0.956 9 C -0.040 4.040 10 C 0.026 3.974 11 O -0.217 6.217 12 C 0.118 3.882 13 C -0.271 4.271 14 C 0.131 3.869 15 F -0.108 7.108 16 C -0.204 4.204 17 C 0.005 3.995 18 Cl -0.009 7.009 19 C -0.186 4.186 20 C -0.197 4.197 21 C -0.212 4.212 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.170 0.830 26 H 0.187 0.813 27 H 0.166 0.834 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.202 -3.607 11.218 17.696 hybrid contribution -0.416 0.925 -0.094 1.018 sum 12.786 -2.682 11.124 17.159 Atomic orbital electron populations 1.70064 1.08519 1.28097 1.52212 1.25913 0.95295 1.03101 0.93721 0.85923 0.80714 0.78233 0.79114 1.19259 1.22599 1.14526 1.20361 0.89391 0.92610 1.49780 0.95565 1.19221 0.92517 1.04979 0.87267 1.22712 0.98272 0.84520 0.91867 1.86220 1.75979 1.41405 1.18107 1.18803 0.91666 0.93350 0.84409 1.21424 1.06790 1.02914 0.95974 1.17068 0.93011 0.86298 0.90557 1.91526 1.74282 1.59598 1.85440 1.20962 1.03448 0.93511 1.02472 1.20148 0.97722 0.90861 0.90783 1.98387 1.89275 1.43549 1.69726 1.20422 1.05721 1.00274 0.92150 1.22886 1.01567 0.92994 1.02271 1.23086 1.01622 0.95610 1.00863 0.92571 0.93016 0.90268 0.83047 0.81278 0.83446 0.87542 0.90364 0.90006 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.02 0.96 5.47 84.65 0.46 1.43 16 3 Si 0.94 42.10 24.94 68.60 1.71 43.81 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.22 -8.60 5.69 99.48 0.57 -8.04 16 7 C -0.48 -27.08 9.36 25.60 0.24 -26.84 16 8 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 9 C -0.04 -1.68 1.03 -52.93 -0.05 -1.74 16 10 C 0.10 3.80 4.18 71.98 0.30 4.10 16 11 O -0.30 -11.97 10.06 -92.39 -0.93 -12.90 16 12 C 0.17 5.41 6.68 22.50 0.15 5.56 16 13 C -0.25 -7.22 9.01 22.41 0.20 -7.02 16 14 C 0.15 3.83 7.30 22.36 0.16 3.99 16 15 F -0.13 -3.21 17.27 44.97 0.78 -2.43 16 16 C -0.18 -4.17 9.81 22.35 0.22 -3.95 16 17 C 0.03 0.78 6.32 22.30 0.14 0.92 16 18 Cl -0.04 -0.81 28.95 -2.72 -0.08 -0.89 16 19 C -0.17 -4.85 9.77 22.40 0.22 -4.63 16 20 C -0.16 -5.86 9.96 30.62 0.30 -5.56 16 21 C -0.17 -6.34 7.32 30.62 0.22 -6.12 16 22 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 23 H 0.05 2.01 6.54 -2.38 -0.02 2.00 16 24 H 0.08 2.38 7.66 -2.39 -0.02 2.36 16 25 H 0.15 4.06 6.33 -2.91 -0.02 4.05 16 26 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 27 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 28 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 29 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.08 3.16 7.13 -2.39 -0.02 3.15 16 31 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -63.73 285.84 5.36 -58.37 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.01 Total: 12.57 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 2.57 Total: -39.84 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.93 Total: -12.90 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.71 Total: 43.81 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -63.73 5.36 -58.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600674629.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.151 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds