Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00482 * 2 1 4 4 H 1.48504 * 109.47505 * 270.00533 * 3 2 1 5 5 H 1.48508 * 109.47022 * 30.00602 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00320 * 3 2 1 7 7 C 1.37881 * 119.99349 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46669 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.46712 * 180.02562 * 10 9 7 12 12 C 1.39668 * 120.00048 * 180.02562 * 11 10 9 13 13 C 1.38936 * 120.07583 * 0.27021 * 12 11 10 14 14 C 1.38080 * 119.92695 * 180.27157 * 13 12 11 15 15 C 1.38311 * 120.07393 * 359.73541 * 14 13 12 16 16 C 1.38263 * 120.15116 * 359.96732 * 15 14 13 17 17 C 1.38129 * 120.07436 * 0.04880 * 16 15 14 18 18 S 1.76193 * 120.03937 * 179.97438 * 17 16 15 19 19 N 1.65606 * 107.21910 * 115.00325 * 18 17 16 20 20 O 1.42105 * 106.40403 * 228.54215 * 18 17 16 21 21 O 1.42098 * 106.40145 * 1.46144 * 18 17 16 22 22 H 0.97008 * 119.99576 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47036 * 60.00195 * 9 7 2 24 24 H 1.08992 * 109.46940 * 299.99978 * 9 7 2 25 25 H 1.08994 * 109.47295 * 60.00277 * 10 9 7 26 26 H 1.08992 * 109.47359 * 299.99644 * 10 9 7 27 27 H 0.97001 * 120.00173 * 359.97438 * 11 10 9 28 28 H 1.08002 * 120.03575 * 0.02562 * 13 12 11 29 29 H 1.07997 * 119.96305 * 179.74527 * 14 13 12 30 30 H 1.07998 * 119.92507 * 180.02562 * 15 14 13 31 31 H 1.07991 * 119.96762 * 180.02562 * 16 15 14 32 32 H 0.97000 * 120.00111 * 180.02562 * 19 18 17 33 33 H 0.96998 * 119.99947 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5124 -4.9308 -0.0012 12 6 2.2107 -6.1405 -0.0007 13 6 3.6000 -6.1424 0.0060 14 6 4.2873 -7.3400 0.0007 15 6 3.5941 -8.5369 -0.0057 16 6 2.2114 -8.5386 -0.0062 17 6 1.5177 -7.3442 -0.0012 18 16 -0.2442 -7.3475 -0.0025 19 7 -0.7367 -6.6863 1.4337 20 8 -0.6465 -6.4411 -1.0203 21 8 -0.6429 -8.7111 0.0258 22 1 -0.4850 0.8402 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5570 0.8896 25 1 2.8717 -3.6044 0.8894 26 1 2.8717 -3.6045 -0.8905 27 1 0.5424 -4.9308 -0.0011 28 1 4.1419 -5.2082 0.0112 29 1 5.3672 -7.3422 0.0017 30 1 4.1340 -9.4722 -0.0094 31 1 1.6732 -9.4749 -0.0107 32 1 -1.6830 -6.5986 1.6281 33 1 -0.0789 -6.3875 2.0809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601141373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = -59.235130 kcal Electronic energy + Delta-G solvation = -18433.821658 eV Core-core repulsion = 15392.898643 eV Total energy + Delta-G solvation = -3040.923015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46213 -37.16845 -35.78234 -35.71583 -33.31047 -33.04196 -31.32374 -30.56680 -28.05261 -24.81176 -23.40793 -21.95221 -20.76222 -19.44674 -18.33404 -17.51367 -17.01199 -16.38671 -16.15316 -15.60876 -15.00463 -14.54876 -14.45295 -14.39503 -13.92516 -13.69037 -12.93947 -12.39305 -12.29548 -12.08955 -11.97128 -11.84726 -11.53213 -11.21067 -11.19534 -10.72400 -10.69369 -10.54579 -10.45720 -9.78526 -9.70927 -9.37764 -9.30805 -8.49757 -7.46870 -6.14577 -4.19137 0.50897 0.99337 1.61558 3.17510 3.24628 3.30998 3.33085 3.52085 3.61318 3.84212 4.36000 4.58241 4.94797 5.02079 5.22191 5.30528 5.48656 5.63685 5.84990 5.97735 6.00647 6.09018 6.13435 6.25343 6.49612 6.55123 6.82622 7.01993 7.21972 7.49648 7.54738 7.77098 7.83953 8.19875 8.86261 9.45947 10.96858 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.004973 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.469831 B = 5629.463782 C = 6572.951948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.010 3.990 10 C 0.117 3.883 11 N -0.728 5.728 12 C 0.315 3.685 13 C -0.214 4.214 14 C -0.018 4.018 15 C -0.211 4.211 16 C 0.024 3.976 17 C -0.761 4.761 18 S 2.700 3.300 19 N -1.253 6.253 20 O -0.963 6.963 21 O -0.974 6.974 22 H 0.263 0.737 23 H 0.027 0.973 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.403 0.597 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.138 0.862 32 H 0.420 0.580 33 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -15.334 3.518 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.027 4.027 10 C -0.005 4.005 11 N -0.353 5.353 12 C 0.201 3.799 13 C -0.237 4.237 14 C -0.037 4.037 15 C -0.233 4.233 16 C 0.004 3.996 17 C -0.856 4.856 18 S 2.791 3.209 19 N -0.927 5.927 20 O -0.952 6.952 21 O -0.964 6.964 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.241 0.759 28 H 0.152 0.848 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.156 0.844 32 H 0.250 0.750 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.613 -15.340 2.652 15.981 hybrid contribution 0.665 1.303 0.601 1.581 sum 4.277 -14.038 3.254 15.031 Atomic orbital electron populations 1.69965 1.06117 1.27000 1.49740 1.25006 0.94891 0.99450 0.94884 0.86502 0.79721 0.82997 0.78232 1.20518 1.21122 1.19787 1.20978 0.93065 0.90262 1.52113 0.92270 1.19327 0.94233 0.90764 0.98399 1.21933 0.96622 0.81605 1.00325 1.45984 1.09618 1.03885 1.75779 1.17451 0.92227 0.84572 0.85695 1.20851 0.92063 0.99340 1.11458 1.21190 0.99689 0.92043 0.90799 1.20913 0.93965 0.98084 1.10309 1.20611 0.94627 0.95545 0.88835 1.29612 1.24405 0.98322 1.33309 1.01396 0.73300 0.73587 0.72654 1.53115 1.17506 1.83228 1.38853 1.93637 1.81291 1.64647 1.55604 1.93545 1.81409 1.35165 1.86268 0.92710 0.95437 0.95790 0.92298 0.92340 0.75921 0.84831 0.85633 0.85805 0.84442 0.75027 0.75549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.06 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.27 4.85 -4.04 -0.02 2.25 16 11 N -0.73 -12.65 5.55 -58.63 -0.33 -12.97 16 12 C 0.31 4.88 6.61 -83.79 -0.55 4.32 16 13 C -0.21 -2.98 9.31 -39.38 -0.37 -3.34 16 14 C -0.02 -0.20 10.04 -39.61 -0.40 -0.60 16 15 C -0.21 -2.39 10.04 -39.55 -0.40 -2.78 16 16 C 0.02 0.30 9.54 -39.61 -0.38 -0.08 16 17 C -0.76 -10.83 5.89 -39.38 -0.23 -11.07 16 18 S 2.70 38.02 5.55 -107.50 -0.60 37.42 16 19 N -1.25 -13.25 9.21 60.35 0.56 -12.69 16 20 O -0.96 -17.25 16.27 -57.17 -0.93 -18.18 16 21 O -0.97 -15.27 16.97 -57.17 -0.97 -16.24 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.06 7.94 -51.93 -0.41 0.65 16 26 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 27 H 0.40 7.11 5.56 -40.82 -0.23 6.89 16 28 H 0.13 1.78 6.74 -52.49 -0.35 1.43 16 29 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 1.53 7.33 -52.49 -0.38 1.15 16 32 H 0.42 3.59 8.96 -34.48 -0.31 3.28 16 33 H 0.42 3.81 8.92 -34.47 -0.31 3.50 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -33.49 295.50 -8.64 -42.13 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -3.64 Total: 9.39 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -2.90 Total: -24.02 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.97 Total: -50.76 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.90 Total: -34.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 38.02 SS G_CDS: -0.60 Total: 37.42 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.49 -8.64 -42.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601141373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.105 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds