Wall clock time and date at job start Mon Mar 30 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00482 * 2 1 4 4 H 1.48504 * 109.47505 * 270.00533 * 3 2 1 5 5 H 1.48508 * 109.47022 * 30.00602 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00320 * 3 2 1 7 7 C 1.37881 * 119.99349 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99653 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46669 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.46712 * 180.02562 * 10 9 7 12 12 C 1.39668 * 120.00048 * 180.02562 * 11 10 9 13 13 C 1.38936 * 120.07583 * 0.27021 * 12 11 10 14 14 C 1.38080 * 119.92695 * 180.27157 * 13 12 11 15 15 C 1.38311 * 120.07393 * 359.73541 * 14 13 12 16 16 C 1.38263 * 120.15116 * 359.96732 * 15 14 13 17 17 C 1.38129 * 120.07436 * 0.04880 * 16 15 14 18 18 S 1.76193 * 120.03937 * 179.97438 * 17 16 15 19 19 N 1.65606 * 107.21910 * 115.00325 * 18 17 16 20 20 O 1.42105 * 106.40403 * 228.54215 * 18 17 16 21 21 O 1.42098 * 106.40145 * 1.46144 * 18 17 16 22 22 H 0.97008 * 119.99576 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.47036 * 60.00195 * 9 7 2 24 24 H 1.08992 * 109.46940 * 299.99978 * 9 7 2 25 25 H 1.08994 * 109.47295 * 60.00277 * 10 9 7 26 26 H 1.08992 * 109.47359 * 299.99644 * 10 9 7 27 27 H 0.97001 * 120.00173 * 359.97438 * 11 10 9 28 28 H 1.08002 * 120.03575 * 0.02562 * 13 12 11 29 29 H 1.07997 * 119.96305 * 179.74527 * 14 13 12 30 30 H 1.07998 * 119.92507 * 180.02562 * 15 14 13 31 31 H 1.07991 * 119.96762 * 180.02562 * 16 15 14 32 32 H 0.97000 * 120.00111 * 180.02562 * 19 18 17 33 33 H 0.96998 * 119.99947 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5124 -4.9308 -0.0012 12 6 2.2107 -6.1405 -0.0007 13 6 3.6000 -6.1424 0.0060 14 6 4.2873 -7.3400 0.0007 15 6 3.5941 -8.5369 -0.0057 16 6 2.2114 -8.5386 -0.0062 17 6 1.5177 -7.3442 -0.0012 18 16 -0.2442 -7.3475 -0.0025 19 7 -0.7367 -6.6863 1.4337 20 8 -0.6465 -6.4411 -1.0203 21 8 -0.6429 -8.7111 0.0258 22 1 -0.4850 0.8402 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5570 0.8896 25 1 2.8717 -3.6044 0.8894 26 1 2.8717 -3.6045 -0.8905 27 1 0.5424 -4.9308 -0.0011 28 1 4.1419 -5.2082 0.0112 29 1 5.3672 -7.3422 0.0017 30 1 4.1340 -9.4722 -0.0094 31 1 1.6732 -9.4749 -0.0107 32 1 -1.6830 -6.5986 1.6281 33 1 -0.0789 -6.3875 2.0809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601141373.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:12 Heat of formation + Delta-G solvation = -85.555853 kcal Electronic energy + Delta-G solvation = -18434.963010 eV Core-core repulsion = 15392.898643 eV Total energy + Delta-G solvation = -3042.064367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54932 -38.39393 -37.13887 -36.96891 -35.10749 -34.11210 -32.54248 -31.97406 -29.46575 -26.53265 -24.56416 -23.34683 -22.18236 -20.56590 -19.45746 -18.66453 -18.51301 -17.86079 -17.33181 -16.72083 -16.52773 -16.15279 -15.93737 -15.44520 -15.04915 -14.96622 -14.22458 -14.21514 -13.41342 -13.32941 -13.24418 -13.17583 -13.07981 -12.98126 -12.50417 -12.40289 -12.32737 -11.68992 -11.55813 -11.42410 -11.38036 -11.10618 -10.58722 -10.33166 -8.65076 -8.23753 -6.35741 -0.59480 -0.03637 0.58330 1.42500 1.43513 1.54448 2.10718 2.27286 2.44962 2.48418 2.80219 3.11435 3.48061 3.94647 4.11693 4.29761 4.40192 4.48014 4.48495 4.67136 4.83852 4.89053 5.09382 5.17616 5.32030 5.36278 5.54239 5.54523 5.68707 5.86095 6.04066 6.18088 6.23622 6.50548 6.80105 7.34384 8.88743 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024653 B = 0.004973 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.469831 B = 5629.463782 C = 6572.951948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.014 3.986 10 C 0.138 3.862 11 N -0.742 5.742 12 C 0.291 3.709 13 C -0.229 4.229 14 C -0.010 4.010 15 C -0.199 4.199 16 C 0.011 3.989 17 C -0.762 4.762 18 S 2.715 3.285 19 N -1.240 6.240 20 O -1.007 7.007 21 O -0.992 6.992 22 H 0.264 0.736 23 H -0.008 1.008 24 H 0.005 0.995 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.397 0.603 28 H 0.136 0.864 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.429 0.571 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 -16.343 4.133 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.580 4.580 8 H 0.089 0.911 9 C -0.023 4.023 10 C 0.015 3.985 11 N -0.368 5.368 12 C 0.180 3.820 13 C -0.252 4.252 14 C -0.029 4.029 15 C -0.220 4.220 16 C -0.009 4.009 17 C -0.858 4.858 18 S 2.808 3.192 19 N -0.919 5.919 20 O -0.996 6.996 21 O -0.981 6.981 22 H 0.073 0.927 23 H 0.011 0.989 24 H 0.023 0.977 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.234 0.766 28 H 0.154 0.846 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.170 0.830 32 H 0.262 0.738 33 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 6.147 -16.394 3.278 17.812 hybrid contribution -0.079 1.463 0.429 1.526 sum 6.068 -14.931 3.707 16.538 Atomic orbital electron populations 1.70108 1.07949 1.27977 1.51083 1.25982 0.95725 1.03515 0.94462 0.85374 0.78741 0.78088 0.78385 1.20070 1.20981 1.18194 1.21467 0.93881 0.91285 1.51333 0.91072 1.19170 0.94639 0.92738 0.95764 1.21495 0.95104 0.80915 1.01029 1.45729 1.09226 1.03937 1.77943 1.17649 0.93051 0.83947 0.87307 1.21087 0.91430 1.00728 1.11935 1.21632 1.01552 0.91006 0.88680 1.21392 0.93415 0.99592 1.07586 1.20957 0.95720 0.95367 0.88845 1.29525 1.23905 0.98723 1.33692 1.00637 0.73246 0.72793 0.72570 1.52789 1.18433 1.82833 1.37846 1.93590 1.82306 1.65687 1.57980 1.93519 1.81920 1.35946 1.86701 0.92677 0.98921 0.97669 0.90831 0.92288 0.76563 0.84603 0.81994 0.82243 0.83047 0.73810 0.74474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 42.66 29.54 68.60 2.03 44.68 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.54 -29.25 9.11 25.60 0.23 -29.01 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.01 0.73 5.09 29.85 0.15 0.88 16 10 C 0.14 5.37 4.85 86.38 0.42 5.79 16 11 N -0.74 -26.21 5.55 -339.41 -1.88 -28.10 16 12 C 0.29 8.83 6.61 38.22 0.25 9.08 16 13 C -0.23 -5.90 9.31 22.40 0.21 -5.69 16 14 C -0.01 -0.19 10.04 22.25 0.22 0.04 16 15 C -0.20 -3.69 10.04 22.29 0.22 -3.47 16 16 C 0.01 0.25 9.54 22.25 0.21 0.46 16 17 C -0.76 -21.02 5.89 22.40 0.13 -20.89 16 18 S 2.72 77.12 5.55 -56.49 -0.31 76.81 16 19 N -1.24 -26.31 9.21 37.02 0.34 -25.97 16 20 O -1.01 -37.49 16.27 -128.00 -2.08 -39.57 16 21 O -0.99 -30.74 16.97 -128.00 -2.17 -32.91 16 22 H 0.26 14.83 8.31 -92.70 -0.77 14.05 16 23 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 24 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 25 H 0.07 2.62 7.94 -2.39 -0.02 2.60 16 26 H 0.06 2.26 7.96 -2.39 -0.02 2.24 16 27 H 0.40 14.65 5.56 -92.71 -0.52 14.13 16 28 H 0.14 3.37 6.74 -2.91 -0.02 3.36 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.15 3.00 7.33 -2.92 -0.02 2.98 16 32 H 0.43 7.38 8.96 -96.74 -0.87 6.51 16 33 H 0.43 7.69 8.92 -96.74 -0.86 6.82 16 Total: -1.00 -73.04 295.50 -2.36 -75.40 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -1.08 Total: 27.09 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 2.52 Total: -42.25 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -1.26 Total: -109.25 kcal Atomic # 8 Polarization: -68.22 SS G_CDS: -4.26 Total: -72.48 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 77.12 SS G_CDS: -0.31 Total: 76.81 kcal Total: -73.04 -2.36 -75.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601141373.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.153 kcal (2) G-P(sol) polarization free energy of solvation -73.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds