Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48500 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47465 * 60.00198 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 N 1.31131 * 126.55026 * 90.00114 * 11 10 9 13 13 C 1.34498 * 105.61481 * 180.02562 * 12 11 10 14 14 C 1.50697 * 126.28769 * 179.97438 * 13 12 11 15 15 O 1.42900 * 109.47050 * 89.99409 * 14 13 12 16 16 C 1.42902 * 113.99704 * 179.97438 * 15 14 13 17 17 C 1.53787 * 113.61600 * 249.13782 * 16 15 14 18 18 C 1.53949 * 87.02092 * 220.05198 * 17 16 15 19 19 C 1.53778 * 87.11503 * 25.35928 * 18 17 16 20 20 N 1.29946 * 107.42265 * 359.97438 * 13 12 11 21 21 O 1.21300 * 110.25269 * 359.70508 * 20 13 12 22 22 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 24 24 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 25 25 H 1.08993 * 109.47333 * 209.99771 * 14 13 12 26 26 H 1.09002 * 109.46829 * 329.99799 * 14 13 12 27 27 H 1.09004 * 112.85442 * 20.33593 * 16 15 14 28 28 H 1.09002 * 113.61229 * 334.56847 * 17 16 15 29 29 H 1.08993 * 113.61341 * 105.46936 * 17 16 15 30 30 H 1.09004 * 113.53532 * 270.81115 * 18 17 16 31 31 H 1.09000 * 113.66969 * 139.93092 * 18 17 16 32 32 H 1.09002 * 113.62109 * 220.09148 * 19 18 17 33 33 H 1.09011 * 113.68899 * 89.19782 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 7 1.7094 -6.0320 -1.0614 13 6 1.2704 -7.2092 -0.5812 14 6 0.8220 -8.3940 -1.3973 15 8 1.9419 -9.2415 -1.6616 16 6 1.6235 -10.4014 -2.4332 17 6 1.7213 -11.7151 -1.6397 18 6 2.3477 -12.3367 -2.9012 19 6 2.7967 -10.9166 -3.2836 20 7 1.3038 -7.1371 0.7159 21 8 1.7186 -6.0522 1.0656 22 1 -0.4851 0.8400 -0.0004 23 1 3.1212 -3.7293 -0.8992 24 1 3.1279 -3.7332 0.8807 25 1 0.0669 -8.9518 -0.8437 26 1 0.3988 -8.0466 -2.3399 27 1 0.6929 -10.2965 -2.9911 28 1 2.4054 -11.6636 -0.7926 29 1 0.7525 -12.1398 -1.3774 30 1 1.6147 -12.7623 -3.5866 31 1 3.1750 -13.0144 -2.6905 32 1 2.6947 -10.6977 -4.3466 33 1 3.7754 -10.6451 -2.8876 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601966258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = 19.241200 kcal Electronic energy + Delta-G solvation = -17333.033521 eV Core-core repulsion = 14295.513494 eV Total energy + Delta-G solvation = -3037.520026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.73615 -40.29623 -37.69475 -36.56982 -34.68183 -34.52880 -30.20896 -29.08446 -27.69234 -26.58629 -25.51688 -24.70074 -22.78131 -20.65430 -19.88319 -19.41177 -18.57878 -18.10017 -16.89618 -16.81801 -16.62130 -16.21049 -15.74670 -15.58970 -14.96835 -14.71772 -14.35499 -13.57922 -13.40380 -13.23392 -13.20775 -13.10317 -12.90711 -12.84031 -12.55366 -12.25795 -12.15985 -11.92314 -11.69737 -11.34858 -11.16900 -11.07789 -10.53266 -10.41521 -8.76170 -8.38794 -6.18270 -0.18421 0.79270 1.37625 1.44249 1.52119 1.59731 1.75392 2.22260 2.26699 2.76012 2.98498 3.09823 3.24658 3.62484 3.67638 3.77698 3.91716 3.97207 4.05117 4.10377 4.36866 4.43849 4.47334 4.64538 4.78700 4.80791 4.82366 5.01656 5.03656 5.18519 5.36038 5.43539 6.12108 6.19242 6.96114 7.04487 8.70968 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.052994 B = 0.003005 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.239324 B = 9314.153784 C = 9468.757905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.091 0.909 9 S -0.147 6.147 10 C -0.019 4.019 11 C 0.223 3.777 12 N -0.486 5.486 13 C 0.165 3.835 14 C 0.160 3.840 15 O -0.393 6.393 16 C 0.049 3.951 17 C -0.160 4.160 18 C -0.129 4.129 19 C -0.141 4.141 20 N -0.385 5.385 21 O 0.077 5.923 22 H 0.273 0.727 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -19.876 -4.946 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.109 0.891 9 S 0.079 5.921 10 C -0.168 4.168 11 C 0.003 3.997 12 N -0.221 5.221 13 C -0.108 4.108 14 C 0.082 3.918 15 O -0.311 6.311 16 C -0.008 4.008 17 C -0.197 4.197 18 C -0.166 4.166 19 C -0.178 4.178 20 N -0.096 5.096 21 O 0.019 5.981 22 H 0.082 0.918 23 H 0.141 0.859 24 H 0.144 0.856 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.558 -20.726 -4.806 21.429 hybrid contribution 1.315 1.487 0.164 1.992 sum 3.873 -19.239 -4.642 20.166 Atomic orbital electron populations 1.70143 1.07857 1.28800 1.47782 1.26083 0.95981 1.03195 0.93525 0.84886 0.78715 0.76277 0.78002 1.17971 1.20088 1.19980 1.23128 0.95489 0.90549 1.59190 0.89089 1.85230 1.09480 1.00203 1.97183 1.21805 1.02030 0.84207 1.08744 1.28121 0.94553 0.96735 0.80335 1.71924 1.18235 1.03025 1.28965 1.26001 1.00417 0.96050 0.88362 1.20578 0.88609 0.84755 0.97842 1.87981 1.33004 1.36224 1.73918 1.24228 1.00242 0.82943 0.93381 1.23526 1.02291 0.95709 0.98217 1.22682 1.01415 0.95453 0.97085 1.23239 0.98148 0.96251 1.00201 1.74560 1.18104 1.00762 1.16173 1.85286 1.58848 1.18179 1.35832 0.91819 0.85871 0.85558 0.88371 0.88219 0.86991 0.90739 0.89879 0.88027 0.90115 0.89764 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.80 13.22 21.65 0.29 -52.52 16 2 C 0.02 0.94 5.49 84.86 0.47 1.40 16 3 Si 1.00 41.61 29.55 68.60 2.03 43.64 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -28.58 9.50 67.95 0.65 -27.93 16 8 H 0.09 4.51 7.80 -2.91 -0.02 4.48 16 9 S -0.15 -7.43 21.42 -56.49 -1.21 -8.64 16 10 C -0.02 -0.72 6.30 71.24 0.45 -0.27 16 11 C 0.22 8.43 7.77 88.38 0.69 9.12 16 12 N -0.49 -18.45 11.55 -303.19 -3.50 -21.95 16 13 C 0.17 5.63 7.85 138.46 1.09 6.72 16 14 C 0.16 3.99 6.40 71.23 0.46 4.45 16 15 O -0.39 -10.12 10.34 -148.98 -1.54 -11.66 16 16 C 0.05 0.85 4.29 31.12 0.13 0.98 16 17 C -0.16 -2.38 7.93 31.18 0.25 -2.13 16 18 C -0.13 -1.47 8.09 31.18 0.25 -1.22 16 19 C -0.14 -2.17 7.91 31.12 0.25 -1.92 16 20 N -0.39 -13.92 12.16 -60.32 -0.73 -14.66 16 21 O 0.08 2.86 11.31 74.84 0.85 3.70 16 22 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 23 H 0.12 4.42 8.14 -2.39 -0.02 4.40 16 24 H 0.13 4.22 8.14 -2.40 -0.02 4.20 16 25 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.11 1.44 7.88 -2.38 -0.02 1.42 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -66.19 307.82 1.96 -64.23 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.11 Total: 8.67 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: 4.67 Total: -10.81 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -3.95 Total: -89.13 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.69 Total: -7.96 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.21 Total: -8.64 kcal Total: -66.19 1.96 -64.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601966258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.474 kcal (2) G-P(sol) polarization free energy of solvation -66.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds