Wall clock time and date at job start Mon Mar 30 2020 01:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38845 * 119.98043 * 2 1 4 4 C 1.38541 * 118.04462 * 179.97438 * 3 2 1 5 5 C 1.39547 * 117.89860 * 359.97438 * 4 3 2 6 6 S 1.76197 * 120.15997 * 179.97438 * 5 4 3 7 7 C 1.81400 * 102.99858 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47329 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47413 * 180.02562 * 8 7 6 10 10 S 1.81001 * 109.47311 * 179.97438 * 9 8 7 11 11 C 1.76199 * 99.99866 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00733 * 359.97438 * 11 10 9 13 13 C 1.38807 * 119.99636 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00085 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99818 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46830 * 60.00128 * 15 13 11 17 17 H 1.48500 * 109.47205 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47022 * 300.00194 * 15 13 11 19 19 N 1.32553 * 119.67361 * 359.97438 * 5 4 3 20 20 N 1.28347 * 122.06416 * 0.02562 * 19 5 4 21 21 H 1.09002 * 109.47357 * 90.00618 * 1 2 3 22 22 H 1.09007 * 109.46932 * 210.00173 * 1 2 3 23 23 H 1.09004 * 109.47313 * 329.99827 * 1 2 3 24 24 H 1.08003 * 120.98338 * 359.70192 * 3 2 1 25 25 H 1.07993 * 121.04836 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47518 * 299.99783 * 7 6 5 27 27 H 1.09004 * 109.47314 * 60.00219 * 7 6 5 28 28 H 1.09002 * 109.46535 * 300.00252 * 8 7 6 29 29 H 1.08996 * 109.47009 * 59.99529 * 8 7 6 30 30 H 1.09003 * 109.46850 * 299.99901 * 9 8 7 31 31 H 1.08997 * 109.47277 * 59.99261 * 9 8 7 32 32 H 0.96995 * 120.00041 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.2027 0.0000 4 6 3.5854 1.1559 0.0005 5 6 4.1963 -0.0988 0.0016 6 16 5.9536 -0.2277 0.0017 7 6 6.2311 -2.0204 0.0024 8 6 7.7347 -2.3037 0.0032 9 6 7.9688 -3.8156 0.0032 10 16 9.7475 -4.1508 0.0033 11 6 9.7269 -5.9126 0.0041 12 1 8.7854 -6.4417 0.0047 13 6 10.9208 -6.6207 0.0038 14 7 12.0683 -5.9759 0.0036 15 14 10.8989 -8.4885 0.0053 16 1 10.1924 -8.9762 -1.2063 17 1 12.2931 -8.9999 0.0054 18 1 10.1939 -8.9743 1.2187 19 7 3.4481 -1.1930 0.0026 20 7 2.1657 -1.1415 0.0021 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 1.6766 2.1469 -0.0048 25 1 4.1733 2.0617 0.0002 26 1 5.7790 -2.4577 0.8926 27 1 5.7790 -2.4585 -0.8874 28 1 8.1872 -1.8663 -0.8868 29 1 8.1865 -1.8657 0.8932 30 1 7.5162 -4.2533 0.8929 31 1 7.5170 -4.2533 -0.8870 32 1 12.9026 -6.4706 0.0030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603315296.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:45 Heat of formation + Delta-G solvation = 30.380713 kcal Electronic energy + Delta-G solvation = -14721.144551 eV Core-core repulsion = 12126.860442 eV Total energy + Delta-G solvation = -2594.284110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.14009 -34.44007 -34.17695 -33.37566 -32.42391 -28.75802 -27.03749 -25.47196 -25.00050 -23.42929 -21.40887 -18.33398 -17.68406 -17.47514 -16.08969 -15.65315 -15.24500 -15.14800 -14.79535 -14.18907 -13.86197 -13.56383 -13.44974 -13.06944 -12.76178 -12.60468 -12.04084 -11.82329 -11.25490 -11.05157 -10.84196 -10.82008 -10.66204 -10.58688 -10.55615 -10.35217 -9.90046 -9.57869 -9.04637 -8.33184 -7.85555 -6.53908 -6.22377 -3.93205 0.48067 0.51691 1.17555 2.10410 3.16267 3.23129 3.24806 3.29080 3.56108 3.88086 4.18473 4.22468 4.29735 4.42091 4.66774 5.03776 5.07601 5.13721 5.14051 5.15675 5.28298 5.40286 5.45179 5.60311 5.67226 5.76944 5.85161 5.97457 6.22774 6.45610 6.67011 7.61314 8.37229 8.38613 9.23918 10.85784 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.042214 B = 0.002909 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.120786 B = 9622.362497 C =10254.432218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.054 3.946 3 C -0.103 4.103 4 C -0.099 4.099 5 C 0.053 3.947 6 S -0.049 6.049 7 C -0.091 4.091 8 C -0.085 4.085 9 C -0.109 4.109 10 S -0.129 6.129 11 C -0.517 4.517 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.246 5.246 20 N -0.231 5.231 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.153 0.847 25 H 0.154 0.846 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.958 16.335 -0.026 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.133 4.133 5 C -0.202 4.202 6 S 0.191 5.809 7 C -0.241 4.241 8 C -0.125 4.125 9 C -0.259 4.259 10 S 0.099 5.901 11 C -0.665 4.665 12 H 0.091 0.909 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.092 5.092 20 N -0.074 5.074 21 H 0.101 0.899 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.171 0.829 25 H 0.172 0.828 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.018 16.176 -0.022 24.214 hybrid contribution -1.896 -1.392 -0.011 2.352 sum -19.914 14.784 -0.033 24.802 Atomic orbital electron populations 1.20653 0.87401 1.04005 1.03558 1.22846 0.99100 0.90414 0.97146 1.22196 0.94125 0.99908 0.97102 1.22008 0.95195 0.97901 0.98200 1.24958 1.01972 0.93985 0.99304 1.85639 0.92834 1.12644 1.89819 1.23759 1.01704 0.91632 1.07014 1.21099 0.90954 0.96605 1.03890 1.23243 1.03463 0.95816 1.03390 1.84621 0.98972 1.09586 1.96895 1.22651 0.95331 0.89873 1.58663 0.90893 1.25017 0.94637 0.99551 0.94556 1.70007 0.97354 1.36043 1.47149 0.86213 0.77316 0.83058 0.78896 1.19903 1.20814 1.19907 1.73615 0.99453 1.24734 1.11393 1.72768 1.01384 1.24984 1.08260 0.89937 0.89965 0.90315 0.82890 0.82792 0.88737 0.88737 0.90492 0.90484 0.91721 0.91723 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.19 36.00 0.37 -0.20 16 2 C 0.05 0.52 6.87 -82.39 -0.57 -0.05 16 3 C -0.10 -0.79 9.86 -39.25 -0.39 -1.18 16 4 C -0.10 -0.91 9.97 -38.98 -0.39 -1.30 16 5 C 0.05 0.66 7.08 -16.75 -0.12 0.55 16 6 S -0.05 -0.61 21.93 -107.50 -2.36 -2.97 16 7 C -0.09 -1.29 5.23 37.16 0.19 -1.10 16 8 C -0.09 -1.39 5.22 -26.73 -0.14 -1.53 16 9 C -0.11 -2.19 5.67 37.15 0.21 -1.98 16 10 S -0.13 -3.37 21.44 -107.50 -2.30 -5.68 16 11 C -0.52 -14.91 9.50 30.94 0.29 -14.61 16 12 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 14 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 15 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 N -0.25 -3.61 10.61 31.49 0.33 -3.27 16 20 N -0.23 -3.13 11.41 33.62 0.38 -2.74 16 21 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 23 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 24 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 25 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 27 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 31 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 310.03 15.07 4.67 4.67 Total: -1.00 -33.06 310.03 -8.38 -41.45 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.19 Total: -3.33 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -0.63 Total: -19.45 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 1.45 Total: -31.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -4.66 Total: -8.65 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.06 -8.38 -41.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603315296.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.828 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds