Wall clock time and date at job start Mon Mar 30 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31596 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48498 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 299.99655 * 3 2 1 6 6 H 1.48501 * 109.47259 * 59.99775 * 3 2 1 7 7 C 1.38792 * 119.99410 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99860 * 199.89346 * 7 2 1 9 9 N 1.36848 * 120.00428 * 19.89775 * 7 2 1 10 10 C 1.46504 * 119.99628 * 19.03019 * 9 7 2 11 11 C 1.50706 * 109.46794 * 263.78975 * 10 9 7 12 12 O 1.21280 * 119.99716 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99756 * 179.97438 * 11 10 9 14 14 O 1.41605 * 119.99993 * 180.02562 * 13 11 10 15 15 C 1.39294 * 120.00210 * 199.02288 * 9 7 2 16 16 C 1.39119 * 120.08224 * 179.97438 * 15 9 7 17 17 C 1.38030 * 119.93182 * 180.02562 * 16 15 9 18 18 C 1.38332 * 120.10711 * 0.02562 * 17 16 15 19 19 C 1.38424 * 120.16520 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.96784 * 180.02562 * 19 18 17 21 21 C 1.38189 * 120.06467 * 359.97438 * 19 18 17 22 22 H 0.96996 * 119.99691 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47420 * 23.78968 * 10 9 7 24 24 H 1.09003 * 109.47157 * 143.79654 * 10 9 7 25 25 H 0.97002 * 120.00372 * 0.02562 * 13 11 10 26 26 H 0.96700 * 114.00417 * 180.02562 * 14 13 11 27 27 H 1.08001 * 120.02851 * 0.02562 * 16 15 9 28 28 H 1.08004 * 119.94578 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.91787 * 179.97438 * 18 17 16 30 30 H 1.07997 * 120.05529 * 180.27729 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7100 1.3462 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0098 -1.2020 0.0005 8 1 3.0414 -1.2299 0.3188 9 7 1.3868 -2.3520 -0.4023 10 6 0.1676 -2.2797 -1.2113 11 6 -1.0380 -2.3979 -0.3147 12 8 -0.8929 -2.5291 0.8822 13 7 -2.2772 -2.3567 -0.8429 14 8 -3.4100 -2.4673 -0.0004 15 6 1.9119 -3.5912 -0.0432 16 6 1.2797 -4.7612 -0.4514 17 6 1.8024 -5.9875 -0.0933 18 6 2.9535 -6.0547 0.6709 19 6 3.5855 -4.8932 1.0803 20 17 5.0301 -4.9835 2.0387 21 6 3.0681 -3.6618 0.7258 22 1 -0.4849 0.8400 -0.0004 23 1 0.1368 -1.3257 -1.7376 24 1 0.1631 -3.0945 -1.9354 25 1 -2.3932 -2.2514 -1.8002 26 1 -4.2546 -2.4274 -0.4696 27 1 0.3807 -4.7100 -1.0477 28 1 1.3120 -6.8960 -0.4104 29 1 3.3597 -7.0158 0.9497 30 1 3.5638 -2.7557 1.0414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000671995701.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:22 Heat of formation + Delta-G solvation = 10.679289 kcal Electronic energy + Delta-G solvation = -18612.089752 eV Core-core repulsion = 15436.321653 eV Total energy + Delta-G solvation = -3175.768099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.16493 -37.93150 -36.22587 -35.56208 -34.94034 -32.08437 -31.21146 -29.95720 -28.58597 -26.99970 -24.17675 -21.68314 -20.85672 -19.78472 -18.51093 -17.47167 -16.87384 -15.98992 -15.00591 -14.85158 -14.31772 -14.29449 -13.92813 -13.54266 -13.13307 -12.88076 -12.82450 -12.43974 -12.09833 -11.78761 -11.29752 -11.15384 -10.93162 -10.90667 -10.73271 -10.43290 -10.30617 -9.94500 -9.80940 -8.84652 -8.60918 -8.20632 -7.93351 -6.83529 -6.50871 -3.84923 2.16878 2.34049 2.79995 2.88679 3.10362 3.16370 3.21294 3.84584 4.01240 4.53864 4.69167 4.96565 5.58772 5.65723 5.70316 5.91745 6.02255 6.10176 6.31447 6.40792 6.50288 6.76625 7.13225 7.21773 7.33418 7.36654 7.53891 7.74539 7.90532 8.14998 8.48136 9.09426 9.36694 9.42824 10.51462 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.008033 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.396543 B = 3484.887892 C = 4988.410430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.028 3.972 3 Si 0.927 3.073 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.309 4.309 8 H 0.105 0.895 9 N -0.423 5.423 10 C 0.144 3.856 11 C 0.541 3.459 12 O -0.496 6.496 13 N -0.610 5.610 14 O -0.332 6.332 15 C 0.228 3.772 16 C -0.227 4.227 17 C -0.055 4.055 18 C -0.230 4.230 19 C 0.027 3.973 20 Cl -0.105 7.105 21 C -0.199 4.199 22 H 0.270 0.730 23 H 0.118 0.882 24 H 0.071 0.929 25 H 0.394 0.606 26 H 0.370 0.630 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.376 -4.613 -6.478 8.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.177 4.177 3 Si 0.754 3.246 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.436 4.436 8 H 0.122 0.878 9 N -0.109 5.109 10 C 0.015 3.985 11 C 0.327 3.673 12 O -0.365 6.365 13 N -0.312 5.312 14 O -0.223 6.223 15 C 0.112 3.888 16 C -0.251 4.251 17 C -0.074 4.074 18 C -0.253 4.253 19 C 0.000 4.000 20 Cl -0.076 7.076 21 C -0.223 4.223 22 H 0.081 0.919 23 H 0.136 0.864 24 H 0.089 0.911 25 H 0.231 0.769 26 H 0.212 0.788 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.902 -4.282 -5.069 6.697 hybrid contribution -0.605 1.109 -0.535 1.372 sum -1.507 -3.173 -5.603 6.613 Atomic orbital electron populations 1.69949 1.05761 1.27718 1.46601 1.25280 0.95446 0.99974 0.96982 0.85839 0.79803 0.81090 0.77904 1.19084 1.20548 1.20747 1.19669 0.96419 0.83460 1.44091 0.87756 1.42231 1.20513 1.02378 1.45827 1.20877 0.82699 1.03320 0.91648 1.21388 0.80732 0.74503 0.90706 1.90634 1.83969 1.46391 1.15530 1.47421 0.97475 1.80864 1.05457 1.89302 1.10692 1.98480 1.23783 1.17673 0.92857 0.85780 0.92517 1.20397 1.02958 0.91638 1.10131 1.20449 0.94460 0.96357 0.96167 1.20244 1.00286 0.95888 1.08881 1.20473 0.88343 0.94943 0.96272 1.98294 1.38906 1.98781 1.71650 1.20281 0.99442 0.96064 1.06510 0.91907 0.86422 0.91115 0.76925 0.78811 0.87550 0.87040 0.87200 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.01 9.19 55.49 0.51 -21.50 16 2 C 0.03 0.68 4.89 -17.45 -0.09 0.60 16 3 Si 0.93 19.41 29.60 -169.99 -5.03 14.38 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.31 -7.75 9.11 -15.11 -0.14 -7.89 16 8 H 0.10 2.58 6.07 -52.49 -0.32 2.26 16 9 N -0.42 -10.05 2.27 -114.41 -0.26 -10.31 16 10 C 0.14 2.98 4.74 -5.19 -0.02 2.95 16 11 C 0.54 12.20 5.88 -10.99 -0.06 12.13 16 12 O -0.50 -14.12 16.36 -12.63 -0.21 -14.32 16 13 N -0.61 -10.75 6.95 31.22 0.22 -10.53 16 14 O -0.33 -5.75 14.69 -29.66 -0.44 -6.19 16 15 C 0.23 5.21 6.35 -83.85 -0.53 4.68 16 16 C -0.23 -4.63 9.11 -39.33 -0.36 -4.98 16 17 C -0.05 -1.01 10.04 -39.62 -0.40 -1.40 16 18 C -0.23 -4.30 9.83 -39.48 -0.39 -4.69 16 19 C 0.03 0.54 6.32 -39.53 -0.25 0.29 16 20 Cl -0.10 -1.86 28.95 -51.86 -1.50 -3.36 16 21 C -0.20 -4.44 9.06 -39.30 -0.36 -4.79 16 22 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 23 H 0.12 2.43 6.48 -51.93 -0.34 2.09 16 24 H 0.07 1.20 6.55 -51.93 -0.34 0.86 16 25 H 0.39 4.96 8.83 -40.82 -0.36 4.60 16 26 H 0.37 3.64 9.28 45.56 0.42 4.06 16 27 H 0.11 2.00 6.17 -52.49 -0.32 1.67 16 28 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.13 2.91 6.11 -52.49 -0.32 2.59 16 LS Contribution 278.56 15.07 4.20 4.20 Total: -1.00 -33.11 278.56 -6.66 -39.77 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -1.56 Total: 10.97 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.59 Total: -3.11 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.47 Total: -42.34 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.64 Total: -20.51 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -1.50 Total: -3.36 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.11 -6.66 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000671995701.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.451 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds