Wall clock time and date at job start Mon Mar 30 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31596 * 1 3 3 Si 1.86799 * 120.00180 * 2 1 4 4 H 1.48498 * 109.46785 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46955 * 299.99655 * 3 2 1 6 6 H 1.48501 * 109.47259 * 59.99775 * 3 2 1 7 7 C 1.38792 * 119.99410 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99860 * 199.89346 * 7 2 1 9 9 N 1.36848 * 120.00428 * 19.89775 * 7 2 1 10 10 C 1.46504 * 119.99628 * 19.03019 * 9 7 2 11 11 C 1.50706 * 109.46794 * 263.78975 * 10 9 7 12 12 O 1.21280 * 119.99716 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99756 * 179.97438 * 11 10 9 14 14 O 1.41605 * 119.99993 * 180.02562 * 13 11 10 15 15 C 1.39294 * 120.00210 * 199.02288 * 9 7 2 16 16 C 1.39119 * 120.08224 * 179.97438 * 15 9 7 17 17 C 1.38030 * 119.93182 * 180.02562 * 16 15 9 18 18 C 1.38332 * 120.10711 * 0.02562 * 17 16 15 19 19 C 1.38424 * 120.16520 * 0.02562 * 18 17 16 20 20 Cl 1.73602 * 119.96784 * 180.02562 * 19 18 17 21 21 C 1.38189 * 120.06467 * 359.97438 * 19 18 17 22 22 H 0.96996 * 119.99691 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47420 * 23.78968 * 10 9 7 24 24 H 1.09003 * 109.47157 * 143.79654 * 10 9 7 25 25 H 0.97002 * 120.00372 * 0.02562 * 13 11 10 26 26 H 0.96700 * 114.00417 * 180.02562 * 14 13 11 27 27 H 1.08001 * 120.02851 * 0.02562 * 16 15 9 28 28 H 1.08004 * 119.94578 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.91787 * 179.97438 * 18 17 16 30 30 H 1.07997 * 120.05529 * 180.27729 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2500 1.6177 0.0000 4 1 3.7100 1.3462 -0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0098 -1.2020 0.0005 8 1 3.0414 -1.2299 0.3188 9 7 1.3868 -2.3520 -0.4023 10 6 0.1676 -2.2797 -1.2113 11 6 -1.0380 -2.3979 -0.3147 12 8 -0.8929 -2.5291 0.8822 13 7 -2.2772 -2.3567 -0.8429 14 8 -3.4100 -2.4673 -0.0004 15 6 1.9119 -3.5912 -0.0432 16 6 1.2797 -4.7612 -0.4514 17 6 1.8024 -5.9875 -0.0933 18 6 2.9535 -6.0547 0.6709 19 6 3.5855 -4.8932 1.0803 20 17 5.0301 -4.9835 2.0387 21 6 3.0681 -3.6618 0.7258 22 1 -0.4849 0.8400 -0.0004 23 1 0.1368 -1.3257 -1.7376 24 1 0.1631 -3.0945 -1.9354 25 1 -2.3932 -2.2514 -1.8002 26 1 -4.2546 -2.4274 -0.4696 27 1 0.3807 -4.7100 -1.0477 28 1 1.3120 -6.8960 -0.4104 29 1 3.3597 -7.0158 0.9497 30 1 3.5638 -2.7557 1.0414 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000671995701.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:22 Heat of formation + Delta-G solvation = -12.462463 kcal Electronic energy + Delta-G solvation = -18613.093254 eV Core-core repulsion = 15436.321653 eV Total energy + Delta-G solvation = -3176.771601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80625 -39.55005 -37.75026 -37.06268 -36.58380 -33.84576 -32.80424 -31.52223 -30.18555 -28.65518 -25.88822 -23.27441 -22.47011 -21.40393 -19.97778 -19.12854 -18.53949 -17.62274 -16.69913 -16.42857 -15.95513 -15.92648 -15.50529 -15.12793 -14.75887 -14.40808 -14.35249 -13.99535 -13.60385 -13.50472 -12.97856 -12.79068 -12.53517 -12.48258 -12.33113 -12.07125 -11.84724 -11.54149 -11.47032 -10.65862 -10.32885 -9.71928 -9.49512 -8.54087 -8.28363 -5.69347 0.58346 0.79291 1.32233 1.38968 1.44428 1.49914 1.56933 2.16827 2.32006 2.85182 3.05929 3.24873 4.06165 4.20311 4.37617 4.52982 4.56314 4.65309 4.71848 4.84556 4.94512 5.19103 5.42035 5.56358 5.68576 5.78350 5.90084 6.25275 6.38545 6.69463 6.89249 7.37563 7.63900 7.84965 8.70164 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.008033 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.396543 B = 3484.887892 C = 4988.410430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C -0.012 4.012 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.294 1.294 7 C -0.326 4.326 8 H 0.093 0.907 9 N -0.447 5.447 10 C 0.147 3.853 11 C 0.541 3.459 12 O -0.566 6.566 13 N -0.593 5.593 14 O -0.353 6.353 15 C 0.207 3.793 16 C -0.233 4.233 17 C -0.049 4.049 18 C -0.221 4.221 19 C 0.018 3.982 20 Cl -0.087 7.087 21 C -0.227 4.227 22 H 0.267 0.733 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.420 0.580 26 H 0.401 0.599 27 H 0.121 0.879 28 H 0.154 0.846 29 H 0.140 0.860 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -6.212 -7.625 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.213 4.213 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.220 1.220 7 C -0.454 4.454 8 H 0.111 0.889 9 N -0.136 5.136 10 C 0.018 3.982 11 C 0.328 3.672 12 O -0.441 6.441 13 N -0.294 5.294 14 O -0.250 6.250 15 C 0.093 3.907 16 C -0.256 4.256 17 C -0.068 4.068 18 C -0.243 4.243 19 C -0.009 4.009 20 Cl -0.058 7.058 21 C -0.251 4.251 22 H 0.076 0.924 23 H 0.132 0.868 24 H 0.126 0.874 25 H 0.261 0.739 26 H 0.249 0.751 27 H 0.139 0.861 28 H 0.172 0.828 29 H 0.157 0.843 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.178 -5.911 -6.302 8.720 hybrid contribution -0.540 1.386 -0.150 1.495 sum -1.718 -4.525 -6.452 8.066 Atomic orbital electron populations 1.70064 1.06585 1.27731 1.48139 1.25944 0.96146 1.02248 0.96957 0.84955 0.78675 0.77650 0.77552 1.18928 1.19216 1.22049 1.19761 0.96297 0.84704 1.44649 0.88928 1.42326 1.21755 1.02161 1.47310 1.20982 0.81280 1.04465 0.91464 1.21687 0.82242 0.73334 0.89937 1.90591 1.85361 1.49881 1.18240 1.46921 0.97046 1.78806 1.06671 1.89256 1.12028 1.98390 1.25303 1.18098 0.93110 0.86574 0.92898 1.20709 1.03318 0.91573 1.10044 1.20952 0.93967 0.97152 0.94734 1.20701 0.99807 0.96455 1.07311 1.20662 0.89134 0.94772 0.96365 1.98294 1.37728 1.98715 1.71064 1.20321 1.00289 0.96470 1.08060 0.92375 0.86842 0.87419 0.73853 0.75127 0.86071 0.82812 0.84257 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.16 9.19 21.65 0.20 -45.96 16 2 C -0.01 -0.58 4.89 84.86 0.41 -0.17 16 3 Si 0.99 40.83 29.60 68.60 2.03 42.86 16 4 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 6 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.33 -16.93 9.11 84.04 0.77 -16.17 16 8 H 0.09 4.84 6.07 -2.91 -0.02 4.82 16 9 N -0.45 -21.59 2.27 -515.90 -1.17 -22.76 16 10 C 0.15 6.03 4.74 85.63 0.41 6.44 16 11 C 0.54 24.29 5.88 87.66 0.52 24.81 16 12 O -0.57 -32.79 16.36 14.36 0.23 -32.56 16 13 N -0.59 -20.07 6.95 -173.54 -1.21 -21.27 16 14 O -0.35 -11.71 14.69 -21.40 -0.31 -12.03 16 15 C 0.21 9.49 6.35 38.36 0.24 9.74 16 16 C -0.23 -9.04 9.11 22.43 0.20 -8.84 16 17 C -0.05 -1.62 10.04 22.24 0.22 -1.40 16 18 C -0.22 -7.56 9.83 22.34 0.22 -7.34 16 19 C 0.02 0.70 6.32 22.30 0.14 0.84 16 20 Cl -0.09 -2.96 28.95 -2.72 -0.08 -3.04 16 21 C -0.23 -10.29 9.06 22.45 0.20 -10.08 16 22 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 23 H 0.11 4.70 6.48 -2.39 -0.02 4.68 16 24 H 0.11 3.46 6.55 -2.39 -0.02 3.44 16 25 H 0.42 9.63 8.83 -92.71 -0.82 8.81 16 26 H 0.40 6.95 9.28 -74.06 -0.69 6.26 16 27 H 0.12 4.25 6.17 -2.91 -0.02 4.23 16 28 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 29 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 30 H 0.11 5.21 6.11 -2.91 -0.02 5.19 16 Total: -1.00 -73.56 278.56 2.74 -70.81 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.29 Total: 26.12 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 3.34 Total: -2.17 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -2.18 Total: -89.98 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.08 Total: -44.59 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 17 Polarization: -2.96 SS G_CDS: -0.08 Total: -3.04 kcal Total: -73.56 2.74 -70.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000671995701.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.352 kcal (2) G-P(sol) polarization free energy of solvation -73.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds