Wall clock time and date at job start Mon Mar 30 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47300 * 299.99755 * 3 2 1 6 6 H 1.48494 * 109.47544 * 60.00112 * 3 2 1 7 7 C 1.37882 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99951 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40142 * 66.46418 * 9 7 2 11 11 O 1.42103 * 106.40515 * 293.54218 * 9 7 2 12 12 N 1.65597 * 107.22048 * 180.02562 * 9 7 2 13 13 C 1.46930 * 120.63071 * 89.99764 * 12 9 7 14 14 C 1.53197 * 108.77290 * 126.36969 * 13 12 9 15 15 C 1.53041 * 109.31107 * 54.64248 * 14 13 12 16 16 F 1.39892 * 109.46081 * 178.61340 * 15 14 13 17 17 F 1.39898 * 109.45262 * 58.64019 * 15 14 13 18 18 C 1.53045 * 109.53338 * 298.63003 * 15 14 13 19 19 H 1.08998 * 109.49846 * 301.38236 * 18 15 14 20 20 N 1.46906 * 109.49455 * 181.31862 * 18 15 14 21 21 C 1.46924 * 120.63414 * 269.98210 * 12 9 7 22 22 H 0.97004 * 120.00410 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58433 * 6.58835 * 13 12 9 24 24 H 1.08992 * 109.58946 * 246.16289 * 13 12 9 25 25 H 1.08993 * 109.50022 * 294.68563 * 14 13 12 26 26 H 1.08998 * 109.49135 * 174.58774 * 14 13 12 27 27 H 1.00896 * 111.00309 * 59.99835 * 20 18 15 28 28 H 1.00902 * 110.99923 * 183.95998 * 20 18 15 29 29 H 1.09001 * 109.59153 * 113.83699 * 21 12 9 30 30 H 1.09002 * 109.58501 * 353.41664 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2501 11 8 0.4519 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.7568 -4.4848 1.2638 14 6 2.5729 -6.0056 1.2498 15 6 3.2395 -6.5846 -0.0003 16 9 3.1008 -7.9766 -0.0001 17 9 4.5982 -6.2515 -0.0004 18 6 2.5726 -6.0059 -1.2503 19 1 1.5091 -6.2442 -1.2387 20 7 3.1920 -6.5860 -2.4495 21 6 2.7565 -4.4851 -1.2647 22 1 -0.4851 0.8400 -0.0004 23 1 2.2006 -4.0571 2.0979 24 1 3.8151 -4.2456 1.3667 25 1 1.5093 -6.2434 1.2382 26 1 3.0326 -6.4357 2.1395 27 1 3.0862 -7.5894 -2.4617 28 1 2.8133 -6.1722 -3.2882 29 1 3.8149 -4.2459 -1.3680 30 1 2.2001 -4.0576 -2.0989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717877926.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:56 Heat of formation + Delta-G solvation = -191.287409 kcal Electronic energy + Delta-G solvation = -20092.738216 eV Core-core repulsion = 16491.859455 eV Total energy + Delta-G solvation = -3600.878761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.064 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.81408 -46.79495 -37.82261 -35.46550 -34.10980 -34.04802 -33.13659 -31.19767 -28.27476 -26.18442 -24.02569 -22.93550 -20.29969 -18.89048 -17.80842 -17.24197 -16.72333 -16.40121 -15.82740 -15.63737 -15.19274 -14.91218 -14.48830 -14.03922 -13.72065 -13.49082 -13.19896 -12.97653 -12.76997 -12.49718 -12.34478 -12.06396 -11.67855 -11.45136 -11.27184 -11.10658 -10.62053 -10.58555 -10.41770 -10.32447 -10.09199 -9.31509 -9.06261 -8.90440 -8.43454 -6.76507 -5.39067 2.08693 3.02331 3.10859 3.18496 3.77007 3.94814 4.09381 4.17036 4.45672 4.51111 4.57436 4.75967 5.03647 5.22754 5.43635 5.56304 5.63927 5.75753 5.84749 5.90808 6.05843 6.20071 6.23720 6.57536 6.85770 7.25228 7.26645 7.37791 7.92322 8.83134 10.17302 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.006354 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.487907 B = 4405.450003 C = 4432.922796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.270 1.270 7 C -1.019 5.019 8 H 0.105 0.895 9 S 2.713 3.287 10 O -1.002 7.002 11 O -1.000 7.000 12 N -1.013 6.013 13 C 0.123 3.877 14 C -0.173 4.173 15 C 0.300 3.700 16 F -0.207 7.207 17 F -0.188 7.188 18 C 0.041 3.959 19 H 0.069 0.931 20 N -0.838 5.838 21 C 0.131 3.869 22 H 0.291 0.709 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.347 0.653 28 H 0.354 0.646 29 H 0.080 0.920 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.816 -9.908 -0.669 11.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.195 1.195 7 C -1.153 5.153 8 H 0.123 0.877 9 S 2.814 3.186 10 O -0.992 6.992 11 O -0.990 6.990 12 N -0.847 5.847 13 C -0.003 4.003 14 C -0.213 4.213 15 C 0.263 3.737 16 F -0.188 7.188 17 F -0.169 7.169 18 C -0.073 4.073 19 H 0.087 0.913 20 N -0.370 5.370 21 C 0.004 3.996 22 H 0.101 0.899 23 H 0.127 0.873 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.098 0.902 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.404 -9.698 -0.386 11.109 hybrid contribution 0.131 0.635 -0.253 0.696 sum 5.536 -9.063 -0.639 10.639 Atomic orbital electron populations 1.69892 1.06803 1.30769 1.40109 1.24767 0.94482 1.00906 0.88403 0.86117 0.80528 0.80245 0.78622 1.18504 1.19554 1.19546 1.30603 1.06289 1.11522 1.66836 0.87712 1.00624 0.72014 0.73028 0.72884 1.93350 1.72618 1.87505 1.45732 1.93355 1.72582 1.87481 1.45623 1.58319 1.62507 1.54680 1.09234 1.21245 1.00937 0.90488 0.87615 1.22957 1.03175 0.98857 0.96296 1.21059 0.79013 0.75706 0.97894 1.92959 1.95798 1.32435 1.97647 1.92990 1.34360 1.92006 1.97587 1.22635 0.97213 0.97708 0.89765 0.91328 1.58509 1.64456 1.10145 1.03905 1.21171 1.01520 0.89378 0.87550 0.89851 0.87273 0.90924 0.88451 0.88416 0.83951 0.83175 0.90185 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.31 13.19 55.43 0.73 -23.58 16 2 C 0.13 3.61 5.46 -17.82 -0.10 3.52 16 3 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -1.02 -27.29 9.75 30.60 0.30 -27.00 16 8 H 0.10 2.60 7.81 -52.48 -0.41 2.19 16 9 S 2.71 68.85 5.01 -107.50 -0.54 68.31 16 10 O -1.00 -27.75 16.61 -57.17 -0.95 -28.70 16 11 O -1.00 -27.67 16.61 -57.17 -0.95 -28.62 16 12 N -1.01 -19.55 3.29 -113.52 -0.37 -19.92 16 13 C 0.12 2.01 6.27 -3.71 -0.02 1.98 16 14 C -0.17 -2.37 5.62 -26.61 -0.15 -2.52 16 15 C 0.30 4.35 1.76 -26.69 -0.05 4.30 16 16 F -0.21 -2.94 16.57 2.25 0.04 -2.90 16 17 F -0.19 -2.96 16.04 2.25 0.04 -2.92 16 18 C 0.04 0.59 3.01 -67.59 -0.20 0.39 16 19 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 20 N -0.84 -10.13 9.19 -4.56 -0.04 -10.17 16 21 C 0.13 2.21 5.82 -3.71 -0.02 2.19 16 22 H 0.29 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.11 1.83 6.91 -51.93 -0.36 1.47 16 24 H 0.07 1.07 7.92 -51.93 -0.41 0.66 16 25 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.35 3.69 8.58 -39.29 -0.34 3.35 16 28 H 0.35 3.67 9.00 -39.29 -0.35 3.31 16 29 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 30 H 0.10 1.82 6.92 -51.93 -0.36 1.46 16 LS Contribution 272.84 15.07 4.11 4.11 Total: -1.00 -33.31 272.84 -6.25 -39.55 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -3.04 Total: 6.81 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -0.24 Total: -17.14 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.32 Total: -53.68 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -1.90 Total: -57.31 kcal Atomic # 9 Polarization: -5.90 SS G_CDS: 0.07 Total: -5.82 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 68.85 SS G_CDS: -0.54 Total: 68.31 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -33.31 -6.25 -39.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717877926.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.736 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds