Wall clock time and date at job start Mon Mar 30 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99862 * 2 1 4 4 H 1.48504 * 109.47329 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47300 * 299.99755 * 3 2 1 6 6 H 1.48494 * 109.47544 * 60.00112 * 3 2 1 7 7 C 1.37882 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99951 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40142 * 66.46418 * 9 7 2 11 11 O 1.42103 * 106.40515 * 293.54218 * 9 7 2 12 12 N 1.65597 * 107.22048 * 180.02562 * 9 7 2 13 13 C 1.46930 * 120.63071 * 89.99764 * 12 9 7 14 14 C 1.53197 * 108.77290 * 126.36969 * 13 12 9 15 15 C 1.53041 * 109.31107 * 54.64248 * 14 13 12 16 16 F 1.39892 * 109.46081 * 178.61340 * 15 14 13 17 17 F 1.39898 * 109.45262 * 58.64019 * 15 14 13 18 18 C 1.53045 * 109.53338 * 298.63003 * 15 14 13 19 19 H 1.08998 * 109.49846 * 301.38236 * 18 15 14 20 20 N 1.46906 * 109.49455 * 181.31862 * 18 15 14 21 21 C 1.46924 * 120.63414 * 269.98210 * 12 9 7 22 22 H 0.97004 * 120.00410 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.58433 * 6.58835 * 13 12 9 24 24 H 1.08992 * 109.58946 * 246.16289 * 13 12 9 25 25 H 1.08993 * 109.50022 * 294.68563 * 14 13 12 26 26 H 1.08998 * 109.49135 * 174.58774 * 14 13 12 27 27 H 1.00896 * 111.00309 * 59.99835 * 20 18 15 28 28 H 1.00902 * 110.99923 * 183.95998 * 20 18 15 29 29 H 1.09001 * 109.59153 * 113.83699 * 21 12 9 30 30 H 1.09002 * 109.58501 * 353.41664 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2501 11 8 0.4519 -2.7956 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.7568 -4.4848 1.2638 14 6 2.5729 -6.0056 1.2498 15 6 3.2395 -6.5846 -0.0003 16 9 3.1008 -7.9766 -0.0001 17 9 4.5982 -6.2515 -0.0004 18 6 2.5726 -6.0059 -1.2503 19 1 1.5091 -6.2442 -1.2387 20 7 3.1920 -6.5860 -2.4495 21 6 2.7565 -4.4851 -1.2647 22 1 -0.4851 0.8400 -0.0004 23 1 2.2006 -4.0571 2.0979 24 1 3.8151 -4.2456 1.3667 25 1 1.5093 -6.2434 1.2382 26 1 3.0326 -6.4357 2.1395 27 1 3.0862 -7.5894 -2.4617 28 1 2.8133 -6.1722 -3.2882 29 1 3.8149 -4.2459 -1.3680 30 1 2.2001 -4.0576 -2.0989 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717877926.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:56 Heat of formation + Delta-G solvation = -219.097353 kcal Electronic energy + Delta-G solvation = -20093.944146 eV Core-core repulsion = 16491.859455 eV Total energy + Delta-G solvation = -3602.084691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.064 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.96583 -47.95150 -39.12969 -37.53166 -36.18353 -35.32175 -35.11077 -32.49730 -29.47132 -28.25717 -25.36467 -24.15939 -21.57030 -20.80922 -19.39992 -18.63227 -18.17353 -17.88997 -17.20652 -16.98943 -16.95577 -16.24136 -15.88799 -15.76371 -15.22045 -14.77580 -14.39767 -14.32067 -14.09992 -13.96687 -13.77886 -13.55863 -13.34682 -13.04056 -12.95794 -12.71964 -12.52958 -12.39604 -12.29421 -11.92855 -11.49554 -11.27446 -10.99864 -10.06529 -9.87415 -8.76839 -7.50173 0.20415 1.32744 1.34482 1.51904 2.19186 2.55995 2.58730 2.67794 3.02293 3.16658 3.27415 3.58795 3.76165 3.86799 4.03916 4.11395 4.26432 4.45156 4.53286 4.61842 4.66339 4.79474 4.98213 5.05383 5.28313 5.73413 5.89627 5.91715 6.40036 6.77487 8.18863 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.006354 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.487907 B = 4405.450003 C = 4432.922796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.988 3.012 4 H -0.248 1.248 5 H -0.259 1.259 6 H -0.258 1.258 7 C -1.042 5.042 8 H 0.118 0.882 9 S 2.722 3.278 10 O -1.035 7.035 11 O -1.032 7.032 12 N -1.009 6.009 13 C 0.114 3.886 14 C -0.169 4.169 15 C 0.301 3.699 16 F -0.203 7.203 17 F -0.194 7.194 18 C 0.044 3.956 19 H 0.070 0.930 20 N -0.836 5.836 21 C 0.127 3.873 22 H 0.299 0.701 23 H 0.100 0.900 24 H 0.091 0.909 25 H 0.100 0.900 26 H 0.128 0.872 27 H 0.358 0.642 28 H 0.363 0.637 29 H 0.089 0.911 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 -10.199 -0.574 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.806 3.194 4 H -0.171 1.171 5 H -0.183 1.183 6 H -0.183 1.183 7 C -1.175 5.175 8 H 0.137 0.863 9 S 2.824 3.176 10 O -1.025 7.025 11 O -1.022 7.022 12 N -0.846 5.846 13 C -0.011 4.011 14 C -0.209 4.209 15 C 0.264 3.736 16 F -0.184 7.184 17 F -0.175 7.175 18 C -0.071 4.071 19 H 0.088 0.912 20 N -0.370 5.370 21 C 0.000 4.000 22 H 0.110 0.890 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.119 0.881 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.108 0.892 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.049 -10.013 -0.298 12.249 hybrid contribution -0.344 0.619 -0.297 0.768 sum 6.705 -9.394 -0.595 11.557 Atomic orbital electron populations 1.69973 1.08680 1.32343 1.41472 1.25980 0.95360 1.05276 0.87521 0.85135 0.79550 0.75284 0.79453 1.17135 1.18347 1.18267 1.31012 1.07214 1.12653 1.66607 0.86345 0.99997 0.72446 0.73515 0.71637 1.93295 1.74187 1.88182 1.46847 1.93302 1.74107 1.88154 1.46671 1.57793 1.61784 1.53650 1.11390 1.21511 1.01638 0.92184 0.85745 1.22957 1.03783 0.96777 0.97391 1.21055 0.78645 0.75889 0.97994 1.92968 1.95754 1.32044 1.97636 1.92981 1.34860 1.92090 1.97612 1.22495 0.97595 0.95951 0.91030 0.91237 1.58482 1.64105 1.10944 1.03517 1.21313 1.01603 0.91071 0.85975 0.89044 0.88136 0.89093 0.88112 0.85360 0.82719 0.82103 0.89231 0.88807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.13 13.19 21.45 0.28 -51.85 16 2 C 0.07 3.90 5.46 84.66 0.46 4.37 16 3 Si 0.99 40.48 29.54 68.60 2.03 42.51 16 4 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -1.04 -55.92 9.75 67.74 0.66 -55.26 16 8 H 0.12 5.79 7.81 -2.91 -0.02 5.77 16 9 S 2.72 140.25 5.01 -56.49 -0.28 139.97 16 10 O -1.03 -58.76 16.61 -128.00 -2.13 -60.89 16 11 O -1.03 -58.37 16.61 -128.00 -2.13 -60.50 16 12 N -1.01 -38.42 3.29 -513.07 -1.69 -40.11 16 13 C 0.11 3.56 6.27 86.36 0.54 4.10 16 14 C -0.17 -4.26 5.62 30.67 0.17 -4.09 16 15 C 0.30 8.00 1.76 30.62 0.05 8.06 16 16 F -0.20 -5.21 16.57 44.97 0.74 -4.46 16 17 F -0.19 -5.60 16.04 44.97 0.72 -4.88 16 18 C 0.04 1.20 3.01 44.99 0.14 1.33 16 19 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 20 N -0.84 -18.57 9.19 -168.34 -1.55 -20.12 16 21 C 0.13 4.16 5.82 86.36 0.50 4.66 16 22 H 0.30 15.63 8.31 -92.71 -0.77 14.86 16 23 H 0.10 3.32 6.91 -2.39 -0.02 3.30 16 24 H 0.09 2.50 7.92 -2.39 -0.02 2.48 16 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.36 6.79 8.58 -89.70 -0.77 6.02 16 28 H 0.36 6.93 9.00 -89.69 -0.81 6.12 16 29 H 0.09 2.76 7.92 -2.39 -0.02 2.74 16 30 H 0.09 3.28 6.92 -2.39 -0.02 3.26 16 Total: -1.00 -71.45 272.84 -1.84 -73.29 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -0.38 Total: 23.85 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 2.53 Total: -36.82 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -2.95 Total: -112.07 kcal Atomic # 8 Polarization: -117.14 SS G_CDS: -4.25 Total: -121.39 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.47 Total: -9.34 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 140.25 SS G_CDS: -0.28 Total: 139.97 kcal Total: -71.45 -1.84 -73.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717877926.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.807 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds