Wall clock time and date at job start Mon Mar 30 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 O 1.45206 * 109.47114 * 234.65585 * 3 2 1 5 5 C 1.34866 * 116.99980 * 176.79222 * 4 3 2 6 6 O 1.21590 * 120.00075 * 5.47758 * 5 4 3 7 7 C 1.46709 * 119.99774 * 185.47261 * 5 4 3 8 8 C 1.36214 * 125.44728 * 174.78259 * 7 5 4 9 9 C 1.41664 * 107.74339 * 180.02562 * 8 7 5 10 10 C 1.40044 * 133.33901 * 179.97438 * 9 8 7 11 11 C 1.36559 * 119.83100 * 180.02562 * 10 9 8 12 12 C 1.38867 * 120.60163 * 359.97438 * 11 10 9 13 13 C 1.37835 * 120.63663 * 0.28626 * 12 11 10 14 14 C 1.39088 * 119.81860 * 359.47484 * 13 12 11 15 15 N 1.37815 * 133.15442 * 180.18904 * 14 13 12 16 16 C 1.36869 * 125.62543 * 0.28608 * 15 14 13 17 17 H 1.08003 * 120.00895 * 135.89624 * 16 15 14 18 18 C 1.39026 * 119.99821 * 315.90017 * 16 15 14 19 19 N 1.31339 * 120.00507 * 157.83127 * 18 16 15 20 20 Si 1.86808 * 119.99699 * 337.83297 * 18 16 15 21 21 H 1.48502 * 109.47061 * 95.71645 * 20 18 16 22 22 H 1.48500 * 109.46831 * 215.71068 * 20 18 16 23 23 H 1.48496 * 109.47093 * 335.71549 * 20 18 16 24 24 H 1.09000 * 109.47249 * 114.65615 * 3 2 1 25 25 H 1.09003 * 109.47706 * 354.65634 * 3 2 1 26 26 H 1.07994 * 126.13019 * 0.05153 * 8 7 5 27 27 H 1.08002 * 120.08276 * 359.97438 * 10 9 8 28 28 H 1.07997 * 119.70109 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.67941 * 180.02562 * 12 11 10 30 30 H 1.08003 * 120.09502 * 179.65548 * 13 12 11 31 31 H 0.96997 * 120.00511 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0916 0.7928 1.1167 5 6 4.4269 0.8412 1.3002 6 8 5.1710 0.3211 0.4914 7 6 4.9815 1.5214 2.4758 8 6 6.2983 1.5512 2.8232 9 6 6.4132 2.3070 4.0158 10 6 7.4984 2.6689 4.8236 11 6 7.2906 3.4242 5.9422 12 6 6.0110 3.8386 6.2876 13 6 4.9264 3.4906 5.5115 14 6 5.1135 2.7261 4.3646 15 7 4.2514 2.2349 3.4082 16 6 2.8957 2.4218 3.3855 17 1 2.4011 2.6775 2.4600 18 6 2.1552 2.2826 4.5538 19 7 0.9806 2.8606 4.6598 20 14 2.8308 1.2732 5.9732 21 1 3.5030 2.1731 6.9446 22 1 1.7166 0.5602 6.6480 23 1 3.8099 0.2842 5.4552 24 1 2.9711 0.4295 -0.9340 25 1 2.9719 -1.0224 0.0957 26 1 7.1094 1.0829 2.2856 27 1 8.4971 2.3508 4.5630 28 1 8.1289 3.7018 6.5638 29 1 5.8637 4.4359 7.1754 30 1 3.9344 3.8130 5.7914 31 1 0.4641 2.7638 5.4750 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729766682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:39 Heat of formation + Delta-G solvation = -0.263797 kcal Electronic energy + Delta-G solvation = -19845.525913 eV Core-core repulsion = 16671.716135 eV Total energy + Delta-G solvation = -3173.809778 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.49213 -41.12846 -38.16269 -37.76984 -37.15471 -35.40925 -33.11852 -31.11031 -30.55989 -29.48089 -26.73566 -25.26135 -22.80522 -22.31829 -21.01473 -20.14348 -19.34456 -18.92381 -17.80622 -17.47532 -17.12533 -16.61776 -16.24371 -15.76918 -15.17931 -15.14937 -14.87157 -14.67467 -14.50150 -14.25608 -13.97922 -13.67497 -13.52030 -13.32972 -13.11912 -12.79865 -12.47203 -12.28369 -11.99316 -11.84281 -11.75446 -11.51348 -11.27774 -10.44669 -9.06859 -8.86489 -8.66464 -6.50127 -0.18170 0.83328 0.89475 1.03444 1.16979 1.23547 1.32505 1.54859 2.00594 2.14622 2.18726 2.40825 2.71921 2.86093 3.15987 3.87210 4.03045 4.17782 4.20094 4.31700 4.38493 4.58583 4.67644 4.78423 5.00781 5.11966 5.13935 5.28648 5.38208 5.70269 5.79961 5.84593 5.97830 6.09769 6.27899 6.40843 6.63373 6.85320 7.17791 8.23679 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.008171 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.034592 B = 3425.988052 C = 4617.392139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.236 3.764 3 C 0.159 3.841 4 O -0.348 6.348 5 C 0.559 3.441 6 O -0.511 6.511 7 C -0.041 4.041 8 C -0.133 4.133 9 C -0.145 4.145 10 C -0.067 4.067 11 C -0.152 4.152 12 C -0.108 4.108 13 C -0.141 4.141 14 C 0.043 3.957 15 N -0.286 5.286 16 C -0.351 4.351 17 H 0.097 0.903 18 C 0.057 3.943 19 N -0.860 5.860 20 Si 0.910 3.090 21 H -0.230 1.230 22 H -0.277 1.277 23 H -0.271 1.271 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.171 0.829 27 H 0.152 0.848 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.099 0.901 31 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.004 -2.846 -0.452 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.082 4.082 3 C 0.083 3.917 4 O -0.263 6.263 5 C 0.406 3.594 6 O -0.401 6.401 7 C -0.152 4.152 8 C -0.160 4.160 9 C -0.149 4.149 10 C -0.086 4.086 11 C -0.171 4.171 12 C -0.128 4.128 13 C -0.162 4.162 14 C -0.071 4.071 15 N 0.048 4.952 16 C -0.478 4.478 17 H 0.114 0.886 18 C -0.154 4.154 19 N -0.491 5.491 20 Si 0.732 3.268 21 H -0.153 1.153 22 H -0.203 1.203 23 H -0.196 1.196 24 H 0.168 0.832 25 H 0.166 0.834 26 H 0.188 0.812 27 H 0.170 0.830 28 H 0.174 0.826 29 H 0.162 0.838 30 H 0.117 0.883 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.875 -2.916 -0.690 9.368 hybrid contribution -0.514 -0.338 0.349 0.708 sum 8.361 -3.255 -0.341 8.979 Atomic orbital electron populations 1.81214 1.14042 1.09418 1.08301 1.28760 0.94657 0.92192 0.92586 1.20454 0.79937 1.00101 0.91217 1.86908 1.24547 1.65610 1.49256 1.19654 0.79635 0.76665 0.83485 1.90817 1.59906 1.45877 1.43514 1.19664 0.92685 1.06563 0.96244 1.20837 0.93516 1.04346 0.97302 1.18374 0.92918 1.05190 0.98466 1.20666 0.97438 0.96902 0.93591 1.20905 0.97026 1.00801 0.98357 1.21129 0.92030 1.00228 0.99451 1.20302 0.99778 1.01389 0.94684 1.18931 0.90123 1.02628 0.95425 1.40360 1.05258 1.32504 1.17088 1.19070 0.79671 1.50617 0.98444 0.88581 1.25900 0.95054 0.94732 0.99693 1.69760 1.13438 1.36300 1.29619 0.86325 0.78760 0.80840 0.80837 1.15297 1.20264 1.19602 0.83197 0.83430 0.81155 0.83043 0.82557 0.83815 0.88281 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.41 18.54 20.00 0.37 -16.04 16 2 C 0.24 7.20 15.83 89.44 1.42 8.62 16 3 C 0.16 3.91 5.96 70.17 0.42 4.32 16 4 O -0.35 -12.91 8.14 -57.80 -0.47 -13.38 16 5 C 0.56 21.40 7.90 70.03 0.55 21.96 16 6 O -0.51 -18.23 16.65 19.54 0.33 -17.90 16 7 C -0.04 -1.74 6.76 39.87 0.27 -1.47 16 8 C -0.13 -5.03 10.55 22.64 0.24 -4.79 16 9 C -0.14 -5.58 6.16 -21.33 -0.13 -5.71 16 10 C -0.07 -2.02 10.06 22.32 0.22 -1.79 16 11 C -0.15 -4.18 9.97 22.03 0.22 -3.96 16 12 C -0.11 -3.49 10.02 22.33 0.22 -3.27 16 13 C -0.14 -5.87 7.04 22.38 0.16 -5.72 16 14 C 0.04 1.91 5.21 39.07 0.20 2.12 16 15 N -0.29 -13.85 2.37 -331.41 -0.78 -14.63 16 16 C -0.35 -18.65 8.93 84.10 0.75 -17.90 16 17 H 0.10 5.53 7.34 -2.91 -0.02 5.51 16 18 C 0.06 3.00 4.81 84.96 0.41 3.41 16 19 N -0.86 -47.08 13.95 21.67 0.30 -46.78 16 20 Si 0.91 41.71 24.72 68.60 1.70 43.41 16 21 H -0.23 -9.72 5.87 99.48 0.58 -9.13 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 24 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.15 2.69 8.13 -2.39 -0.02 2.67 16 26 H 0.17 5.29 8.06 -2.91 -0.02 5.26 16 27 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.10 4.42 6.18 -2.91 -0.02 4.41 16 31 H 0.29 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -65.72 283.97 7.45 -58.27 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.06 Total: 11.25 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 4.95 Total: -4.19 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -0.11 Total: -77.45 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.14 Total: -31.28 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.70 Total: 43.41 kcal Total: -65.72 7.45 -58.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729766682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.004 kcal (2) G-P(sol) polarization free energy of solvation -65.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds