Wall clock time and date at job start Mon Mar 30 2020 01:30:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13603 * 1
3 3 C 1.47194 * 179.97438 * 2 1
4 4 O 1.45206 * 109.47114 * 234.65585 * 3 2 1
5 5 C 1.34866 * 116.99980 * 176.79222 * 4 3 2
6 6 O 1.21590 * 120.00075 * 5.47758 * 5 4 3
7 7 C 1.46709 * 119.99774 * 185.47261 * 5 4 3
8 8 C 1.36214 * 125.44728 * 174.78259 * 7 5 4
9 9 C 1.41664 * 107.74339 * 180.02562 * 8 7 5
10 10 C 1.40044 * 133.33901 * 179.97438 * 9 8 7
11 11 C 1.36559 * 119.83100 * 180.02562 * 10 9 8
12 12 C 1.38867 * 120.60163 * 359.97438 * 11 10 9
13 13 C 1.37835 * 120.63663 * 0.28626 * 12 11 10
14 14 C 1.39088 * 119.81860 * 359.47484 * 13 12 11
15 15 N 1.37815 * 133.15442 * 180.18904 * 14 13 12
16 16 C 1.36869 * 125.62543 * 0.28608 * 15 14 13
17 17 H 1.08003 * 120.00895 * 135.89624 * 16 15 14
18 18 C 1.39026 * 119.99821 * 315.90017 * 16 15 14
19 19 N 1.31339 * 120.00507 * 157.83127 * 18 16 15
20 20 Si 1.86808 * 119.99699 * 337.83297 * 18 16 15
21 21 H 1.48502 * 109.47061 * 95.71645 * 20 18 16
22 22 H 1.48500 * 109.46831 * 215.71068 * 20 18 16
23 23 H 1.48496 * 109.47093 * 335.71549 * 20 18 16
24 24 H 1.09000 * 109.47249 * 114.65615 * 3 2 1
25 25 H 1.09003 * 109.47706 * 354.65634 * 3 2 1
26 26 H 1.07994 * 126.13019 * 0.05153 * 8 7 5
27 27 H 1.08002 * 120.08276 * 359.97438 * 10 9 8
28 28 H 1.07997 * 119.70109 * 179.97438 * 11 10 9
29 29 H 1.08002 * 119.67941 * 180.02562 * 12 11 10
30 30 H 1.08003 * 120.09502 * 179.65548 * 13 12 11
31 31 H 0.96997 * 120.00511 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 8 3.0916 0.7928 1.1167
5 6 4.4269 0.8412 1.3002
6 8 5.1710 0.3211 0.4914
7 6 4.9815 1.5214 2.4758
8 6 6.2983 1.5512 2.8232
9 6 6.4132 2.3070 4.0158
10 6 7.4984 2.6689 4.8236
11 6 7.2906 3.4242 5.9422
12 6 6.0110 3.8386 6.2876
13 6 4.9264 3.4906 5.5115
14 6 5.1135 2.7261 4.3646
15 7 4.2514 2.2349 3.4082
16 6 2.8957 2.4218 3.3855
17 1 2.4011 2.6775 2.4600
18 6 2.1552 2.2826 4.5538
19 7 0.9806 2.8606 4.6598
20 14 2.8308 1.2732 5.9732
21 1 3.5030 2.1731 6.9446
22 1 1.7166 0.5602 6.6480
23 1 3.8099 0.2842 5.4552
24 1 2.9711 0.4295 -0.9340
25 1 2.9719 -1.0224 0.0957
26 1 7.1094 1.0829 2.2856
27 1 8.4971 2.3508 4.5630
28 1 8.1289 3.7018 6.5638
29 1 5.8637 4.4359 7.1754
30 1 3.9344 3.8130 5.7914
31 1 0.4641 2.7638 5.4750
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000729766682.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:30:39
Heat of formation + Delta-G solvation = -0.263797 kcal
Electronic energy + Delta-G solvation = -19845.525913 eV
Core-core repulsion = 16671.716135 eV
Total energy + Delta-G solvation = -3173.809778 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 270.079 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-42.49213 -41.12846 -38.16269 -37.76984 -37.15471 -35.40925 -33.11852 -31.11031
-30.55989 -29.48089 -26.73566 -25.26135 -22.80522 -22.31829 -21.01473 -20.14348
-19.34456 -18.92381 -17.80622 -17.47532 -17.12533 -16.61776 -16.24371 -15.76918
-15.17931 -15.14937 -14.87157 -14.67467 -14.50150 -14.25608 -13.97922 -13.67497
-13.52030 -13.32972 -13.11912 -12.79865 -12.47203 -12.28369 -11.99316 -11.84281
-11.75446 -11.51348 -11.27774 -10.44669 -9.06859 -8.86489 -8.66464 -6.50127
-0.18170 0.83328 0.89475 1.03444 1.16979 1.23547 1.32505 1.54859
2.00594 2.14622 2.18726 2.40825 2.71921 2.86093 3.15987 3.87210
4.03045 4.17782 4.20094 4.31700 4.38493 4.58583 4.67644 4.78423
5.00781 5.11966 5.13935 5.28648 5.38208 5.70269 5.79961 5.84593
5.97830 6.09769 6.27899 6.40843 6.63373 6.85320 7.17791 8.23679
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.018465 B = 0.008171 C = 0.006063
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1516.034592 B = 3425.988052 C = 4617.392139
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.450 5.450
2 C 0.236 3.764
3 C 0.159 3.841
4 O -0.348 6.348
5 C 0.559 3.441
6 O -0.511 6.511
7 C -0.041 4.041
8 C -0.133 4.133
9 C -0.145 4.145
10 C -0.067 4.067
11 C -0.152 4.152
12 C -0.108 4.108
13 C -0.141 4.141
14 C 0.043 3.957
15 N -0.286 5.286
16 C -0.351 4.351
17 H 0.097 0.903
18 C 0.057 3.943
19 N -0.860 5.860
20 Si 0.910 3.090
21 H -0.230 1.230
22 H -0.277 1.277
23 H -0.271 1.271
24 H 0.151 0.849
25 H 0.148 0.852
26 H 0.171 0.829
27 H 0.152 0.848
28 H 0.157 0.843
29 H 0.144 0.856
30 H 0.099 0.901
31 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.004 -2.846 -0.452 11.375
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.130 5.130
2 C -0.082 4.082
3 C 0.083 3.917
4 O -0.263 6.263
5 C 0.406 3.594
6 O -0.401 6.401
7 C -0.152 4.152
8 C -0.160 4.160
9 C -0.149 4.149
10 C -0.086 4.086
11 C -0.171 4.171
12 C -0.128 4.128
13 C -0.162 4.162
14 C -0.071 4.071
15 N 0.048 4.952
16 C -0.478 4.478
17 H 0.114 0.886
18 C -0.154 4.154
19 N -0.491 5.491
20 Si 0.732 3.268
21 H -0.153 1.153
22 H -0.203 1.203
23 H -0.196 1.196
24 H 0.168 0.832
25 H 0.166 0.834
26 H 0.188 0.812
27 H 0.170 0.830
28 H 0.174 0.826
29 H 0.162 0.838
30 H 0.117 0.883
31 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 8.875 -2.916 -0.690 9.368
hybrid contribution -0.514 -0.338 0.349 0.708
sum 8.361 -3.255 -0.341 8.979
Atomic orbital electron populations
1.81214 1.14042 1.09418 1.08301 1.28760 0.94657 0.92192 0.92586
1.20454 0.79937 1.00101 0.91217 1.86908 1.24547 1.65610 1.49256
1.19654 0.79635 0.76665 0.83485 1.90817 1.59906 1.45877 1.43514
1.19664 0.92685 1.06563 0.96244 1.20837 0.93516 1.04346 0.97302
1.18374 0.92918 1.05190 0.98466 1.20666 0.97438 0.96902 0.93591
1.20905 0.97026 1.00801 0.98357 1.21129 0.92030 1.00228 0.99451
1.20302 0.99778 1.01389 0.94684 1.18931 0.90123 1.02628 0.95425
1.40360 1.05258 1.32504 1.17088 1.19070 0.79671 1.50617 0.98444
0.88581 1.25900 0.95054 0.94732 0.99693 1.69760 1.13438 1.36300
1.29619 0.86325 0.78760 0.80840 0.80837 1.15297 1.20264 1.19602
0.83197 0.83430 0.81155 0.83043 0.82557 0.83815 0.88281 0.89863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.45 -16.41 18.54 20.00 0.37 -16.04 16
2 C 0.24 7.20 15.83 89.44 1.42 8.62 16
3 C 0.16 3.91 5.96 70.17 0.42 4.32 16
4 O -0.35 -12.91 8.14 -57.80 -0.47 -13.38 16
5 C 0.56 21.40 7.90 70.03 0.55 21.96 16
6 O -0.51 -18.23 16.65 19.54 0.33 -17.90 16
7 C -0.04 -1.74 6.76 39.87 0.27 -1.47 16
8 C -0.13 -5.03 10.55 22.64 0.24 -4.79 16
9 C -0.14 -5.58 6.16 -21.33 -0.13 -5.71 16
10 C -0.07 -2.02 10.06 22.32 0.22 -1.79 16
11 C -0.15 -4.18 9.97 22.03 0.22 -3.96 16
12 C -0.11 -3.49 10.02 22.33 0.22 -3.27 16
13 C -0.14 -5.87 7.04 22.38 0.16 -5.72 16
14 C 0.04 1.91 5.21 39.07 0.20 2.12 16
15 N -0.29 -13.85 2.37 -331.41 -0.78 -14.63 16
16 C -0.35 -18.65 8.93 84.10 0.75 -17.90 16
17 H 0.10 5.53 7.34 -2.91 -0.02 5.51 16
18 C 0.06 3.00 4.81 84.96 0.41 3.41 16
19 N -0.86 -47.08 13.95 21.67 0.30 -46.78 16
20 Si 0.91 41.71 24.72 68.60 1.70 43.41 16
21 H -0.23 -9.72 5.87 99.48 0.58 -9.13 16
22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16
23 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16
24 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16
25 H 0.15 2.69 8.13 -2.39 -0.02 2.67 16
26 H 0.17 5.29 8.06 -2.91 -0.02 5.26 16
27 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16
28 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16
29 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16
30 H 0.10 4.42 6.18 -2.91 -0.02 4.41 16
31 H 0.29 14.64 8.31 -92.71 -0.77 13.87 16
Total: -1.00 -65.72 283.97 7.45 -58.27
By element:
Atomic # 1 Polarization: 10.19 SS G_CDS: 1.06 Total: 11.25 kcal
Atomic # 6 Polarization: -9.14 SS G_CDS: 4.95 Total: -4.19 kcal
Atomic # 7 Polarization: -77.34 SS G_CDS: -0.11 Total: -77.45 kcal
Atomic # 8 Polarization: -31.13 SS G_CDS: -0.14 Total: -31.28 kcal
Atomic # 14 Polarization: 41.71 SS G_CDS: 1.70 Total: 43.41 kcal
Total: -65.72 7.45 -58.27 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000729766682.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.004 kcal
(2) G-P(sol) polarization free energy of solvation -65.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.268 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.264 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds