Wall clock time and date at job start Mon Mar 30 2020 01:27:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.35757 * 116.99624 * 2 1
4 4 C 1.37981 * 123.48487 * 0.04931 * 3 2 1
5 5 C 1.33641 * 115.10161 * 179.97438 * 4 3 2
6 6 S 1.70578 * 111.15665 * 359.97438 * 5 4 3
7 7 C 1.37394 * 123.47756 * 179.97438 * 3 2 1
8 8 C 1.41473 * 125.48538 * 0.04393 * 7 3 2
9 9 O 1.21707 * 119.99312 * 359.97312 * 8 7 3
10 10 O 1.34970 * 120.00570 * 179.97438 * 8 7 3
11 11 C 1.42897 * 117.00240 * 180.02562 * 10 8 7
12 12 C 1.52997 * 109.47108 * 179.97438 * 11 10 8
13 13 C 1.53000 * 109.46790 * 179.97438 * 12 11 10
14 14 C 1.50706 * 109.46994 * 180.02562 * 13 12 11
15 15 H 1.07997 * 119.99562 * 359.97438 * 14 13 12
16 16 C 1.37874 * 120.00107 * 180.02562 * 14 13 12
17 17 N 1.31519 * 120.00135 * 0.02562 * 16 14 13
18 18 Si 1.86795 * 120.00088 * 179.97438 * 16 14 13
19 19 H 1.48511 * 109.46959 * 60.00112 * 18 16 14
20 20 H 1.48495 * 109.47550 * 180.02562 * 18 16 14
21 21 H 1.48503 * 109.47424 * 300.00531 * 18 16 14
22 22 H 1.09004 * 109.47467 * 59.99699 * 1 2 3
23 23 H 1.09008 * 109.46989 * 179.97438 * 1 2 3
24 24 H 1.08992 * 109.47480 * 299.99369 * 1 2 3
25 25 H 1.08004 * 122.44677 * 359.97438 * 4 3 2
26 26 H 1.08000 * 124.42081 * 180.26623 * 5 4 3
27 27 H 1.09001 * 109.46992 * 299.99861 * 11 10 8
28 28 H 1.08999 * 109.47094 * 59.99142 * 11 10 8
29 29 H 1.08996 * 109.47375 * 299.99700 * 12 11 10
30 30 H 1.09001 * 109.47006 * 60.00589 * 12 11 10
31 31 H 1.08995 * 109.47628 * 299.99849 * 13 12 11
32 32 H 1.08999 * 109.47434 * 60.00299 * 13 12 11
33 33 H 0.96995 * 120.00071 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0452 1.2096 0.0000
4 6 1.3654 2.4103 0.0010
5 6 2.1391 3.5000 0.0014
6 16 3.7926 3.0809 0.0012
7 6 3.4104 1.3647 0.0005
8 6 4.3564 0.3128 0.0002
9 8 3.9795 -0.8444 0.0000
10 8 5.6768 0.5926 0.0003
11 6 6.5754 -0.5185 -0.0006
12 6 8.0176 -0.0080 -0.0011
13 6 8.9797 -1.1977 -0.0014
14 6 10.4004 -0.6949 -0.0012
15 1 10.5973 0.3670 -0.0013
16 6 11.4486 -1.5905 -0.0019
17 7 11.2088 -2.8836 -0.0033
18 14 13.2095 -0.9672 -0.0024
19 1 13.4431 -0.1425 1.2104
20 1 14.1434 -2.1218 -0.0038
21 1 13.4422 -0.1416 -1.2146
22 1 -0.3634 0.5139 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3634 0.5137 0.8900
25 1 0.2867 2.4655 0.0014
26 1 1.7662 4.5135 0.0063
27 1 6.4044 -1.1247 0.8890
28 1 6.4041 -1.1236 -0.8909
29 1 8.1883 0.5979 -0.8908
30 1 8.1891 0.5972 0.8892
31 1 8.8090 -1.8033 0.8886
32 1 8.8084 -1.8033 -0.8913
33 1 11.9463 -3.5136 -0.0034
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000730059202.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:27:45
Heat of formation + Delta-G solvation = -99.976717 kcal
Electronic energy + Delta-G solvation = -17560.502935 eV
Core-core repulsion = 14485.520481 eV
Total energy + Delta-G solvation = -3074.982454 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.076 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.57878 -39.58492 -36.50215 -36.05290 -33.89655 -31.71320 -30.62379 -27.74493
-26.78938 -25.16598 -23.34525 -21.73646 -20.31665 -19.85833 -18.73925 -17.23614
-16.64123 -16.45885 -16.22569 -15.88548 -15.57452 -14.74497 -14.43766 -14.12846
-14.02337 -13.11291 -13.10643 -12.85432 -12.15201 -12.00798 -11.93043 -11.73618
-11.41499 -11.17244 -10.90652 -10.63332 -10.54392 -10.26635 -10.23149 -9.61904
-9.44793 -9.13808 -9.11893 -8.34837 -8.33725 -5.98656 -4.01592 0.18874
1.20900 1.57994 2.01195 3.09805 3.10776 3.18756 3.35639 3.39736
3.42556 4.32753 4.47695 4.74959 4.77483 4.84098 5.12066 5.18434
5.36654 5.37027 5.44450 5.69733 5.76778 5.79846 6.13439 6.59416
6.62962 6.93417 6.97180 7.07286 7.66459 7.78515 8.00016 8.10958
8.41641 9.04609 9.62264 11.12831
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.038294 B = 0.003287 C = 0.003038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 731.008103 B = 8515.321709 C = 9215.279634
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.272 6.272
3 C 0.193 3.807
4 C -0.220 4.220
5 C -0.206 4.206
6 S 0.285 5.715
7 C -0.317 4.317
8 C 0.535 3.465
9 O -0.495 6.495
10 O -0.355 6.355
11 C 0.069 3.931
12 C -0.107 4.107
13 C 0.024 3.976
14 C -0.521 4.521
15 H 0.057 0.943
16 C 0.056 3.944
17 N -0.895 5.895
18 Si 0.895 3.105
19 H -0.276 1.276
20 H -0.287 1.287
21 H -0.276 1.276
22 H 0.057 0.943
23 H 0.104 0.896
24 H 0.057 0.943
25 H 0.151 0.849
26 H 0.176 0.824
27 H 0.064 0.936
28 H 0.064 0.936
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.019 0.981
32 H 0.019 0.981
33 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.275 13.422 0.015 26.867
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 O -0.184 6.184
3 C 0.133 3.867
4 C -0.254 4.254
5 C -0.344 4.344
6 S 0.552 5.448
7 C -0.435 4.435
8 C 0.380 3.620
9 O -0.386 6.386
10 O -0.273 6.273
11 C -0.005 4.005
12 C -0.145 4.145
13 C -0.013 4.013
14 C -0.559 4.559
15 H 0.075 0.925
16 C -0.145 4.145
17 N -0.534 5.534
18 Si 0.723 3.277
19 H -0.202 1.202
20 H -0.213 1.213
21 H -0.202 1.202
22 H 0.076 0.924
23 H 0.123 0.877
24 H 0.076 0.924
25 H 0.168 0.832
26 H 0.193 0.807
27 H 0.082 0.918
28 H 0.082 0.918
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.038 0.962
32 H 0.038 0.962
33 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -21.816 13.509 0.014 25.660
hybrid contribution -0.754 -0.561 -0.002 0.940
sum -22.570 12.948 0.012 26.021
Atomic orbital electron populations
1.23208 0.78107 1.04586 1.01365 1.86334 1.21133 1.24123 1.86783
1.18284 0.89859 0.85693 0.92910 1.19963 1.02111 0.90699 1.12597
1.25302 1.00506 1.03860 1.04738 1.83501 1.01000 0.94224 1.66061
1.21814 0.93711 0.98613 1.29342 1.18091 0.82055 0.87440 0.74392
1.90924 1.80691 1.21060 1.45893 1.86154 1.16017 1.40913 1.84168
1.23066 0.88731 0.86609 1.02047 1.21756 0.89504 1.01381 1.01868
1.19049 0.92659 0.91927 0.97694 1.21151 0.90844 0.92976 1.50975
0.92484 1.25030 0.99332 0.94864 0.95260 1.69960 1.31909 1.00987
1.50556 0.86609 0.84250 0.78207 0.78642 1.20190 1.21295 1.20198
0.92447 0.87726 0.92442 0.83170 0.80690 0.91790 0.91796 0.92189
0.92192 0.96225 0.96225 0.92869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.94 101.05 1.00 1.17 16
2 O -0.27 -3.60 9.36 -36.53 -0.34 -3.94 16
3 C 0.19 2.44 6.70 -39.98 -0.27 2.17 16
4 C -0.22 -1.90 9.17 -41.29 -0.38 -2.28 16
5 C -0.21 -1.54 10.90 29.12 0.32 -1.22 16
6 S 0.29 2.92 22.82 -107.50 -2.45 0.46 16
7 C -0.32 -4.60 6.28 -38.66 -0.24 -4.84 16
8 C 0.53 9.75 7.72 31.96 0.25 10.00 16
9 O -0.50 -10.38 15.62 -25.55 -0.40 -10.77 16
10 O -0.36 -6.61 9.87 -41.23 -0.41 -7.02 16
11 C 0.07 1.38 5.38 37.16 0.20 1.58 16
12 C -0.11 -2.33 5.52 -26.73 -0.15 -2.48 16
13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16
14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16
15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16
16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
17 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16
18 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16
19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
22 H 0.06 0.32 7.88 -51.93 -0.41 -0.09 16
23 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16
24 H 0.06 0.32 7.88 -51.93 -0.41 -0.09 16
25 H 0.15 0.85 6.99 -52.48 -0.37 0.49 16
26 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16
27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16
28 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16
29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16
30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16
31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
LS Contribution 306.79 15.07 4.62 4.62
Total: -1.00 -34.49 306.79 -7.19 -41.68
By element:
Atomic # 1 Polarization: -2.03 SS G_CDS: -4.11 Total: -6.14 kcal
Atomic # 6 Polarization: -9.34 SS G_CDS: 0.18 Total: -9.16 kcal
Atomic # 7 Polarization: -27.31 SS G_CDS: 0.74 Total: -26.58 kcal
Atomic # 8 Polarization: -20.59 SS G_CDS: -1.15 Total: -21.74 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal
Atomic # 16 Polarization: 2.92 SS G_CDS: -2.45 Total: 0.46 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -34.49 -7.19 -41.68 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000730059202.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.298 kcal
(2) G-P(sol) polarization free energy of solvation -34.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.977 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds