Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35757 * 116.99624 * 2 1 4 4 C 1.37981 * 123.48487 * 0.04931 * 3 2 1 5 5 C 1.33641 * 115.10161 * 179.97438 * 4 3 2 6 6 S 1.70578 * 111.15665 * 359.97438 * 5 4 3 7 7 C 1.37394 * 123.47756 * 179.97438 * 3 2 1 8 8 C 1.41473 * 125.48538 * 0.04393 * 7 3 2 9 9 O 1.21707 * 119.99312 * 359.97312 * 8 7 3 10 10 O 1.34970 * 120.00570 * 179.97438 * 8 7 3 11 11 C 1.42897 * 117.00240 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47108 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46790 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46994 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99562 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00107 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00135 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00088 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.46959 * 60.00112 * 18 16 14 20 20 H 1.48495 * 109.47550 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47424 * 300.00531 * 18 16 14 22 22 H 1.09004 * 109.47467 * 59.99699 * 1 2 3 23 23 H 1.09008 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47480 * 299.99369 * 1 2 3 25 25 H 1.08004 * 122.44677 * 359.97438 * 4 3 2 26 26 H 1.08000 * 124.42081 * 180.26623 * 5 4 3 27 27 H 1.09001 * 109.46992 * 299.99861 * 11 10 8 28 28 H 1.08999 * 109.47094 * 59.99142 * 11 10 8 29 29 H 1.08996 * 109.47375 * 299.99700 * 12 11 10 30 30 H 1.09001 * 109.47006 * 60.00589 * 12 11 10 31 31 H 1.08995 * 109.47628 * 299.99849 * 13 12 11 32 32 H 1.08999 * 109.47434 * 60.00299 * 13 12 11 33 33 H 0.96995 * 120.00071 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3654 2.4103 0.0010 5 6 2.1391 3.5000 0.0014 6 16 3.7926 3.0809 0.0012 7 6 3.4104 1.3647 0.0005 8 6 4.3564 0.3128 0.0002 9 8 3.9795 -0.8444 0.0000 10 8 5.6768 0.5926 0.0003 11 6 6.5754 -0.5185 -0.0006 12 6 8.0176 -0.0080 -0.0011 13 6 8.9797 -1.1977 -0.0014 14 6 10.4004 -0.6949 -0.0012 15 1 10.5973 0.3670 -0.0013 16 6 11.4486 -1.5905 -0.0019 17 7 11.2088 -2.8836 -0.0033 18 14 13.2095 -0.9672 -0.0024 19 1 13.4431 -0.1425 1.2104 20 1 14.1434 -2.1218 -0.0038 21 1 13.4422 -0.1416 -1.2146 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.2867 2.4655 0.0014 26 1 1.7662 4.5135 0.0063 27 1 6.4044 -1.1247 0.8890 28 1 6.4041 -1.1236 -0.8909 29 1 8.1883 0.5979 -0.8908 30 1 8.1891 0.5972 0.8892 31 1 8.8090 -1.8033 0.8886 32 1 8.8084 -1.8033 -0.8913 33 1 11.9463 -3.5136 -0.0034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730059202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -99.976717 kcal Electronic energy + Delta-G solvation = -17560.502935 eV Core-core repulsion = 14485.520481 eV Total energy + Delta-G solvation = -3074.982454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57878 -39.58492 -36.50215 -36.05290 -33.89655 -31.71320 -30.62379 -27.74493 -26.78938 -25.16598 -23.34525 -21.73646 -20.31665 -19.85833 -18.73925 -17.23614 -16.64123 -16.45885 -16.22569 -15.88548 -15.57452 -14.74497 -14.43766 -14.12846 -14.02337 -13.11291 -13.10643 -12.85432 -12.15201 -12.00798 -11.93043 -11.73618 -11.41499 -11.17244 -10.90652 -10.63332 -10.54392 -10.26635 -10.23149 -9.61904 -9.44793 -9.13808 -9.11893 -8.34837 -8.33725 -5.98656 -4.01592 0.18874 1.20900 1.57994 2.01195 3.09805 3.10776 3.18756 3.35639 3.39736 3.42556 4.32753 4.47695 4.74959 4.77483 4.84098 5.12066 5.18434 5.36654 5.37027 5.44450 5.69733 5.76778 5.79846 6.13439 6.59416 6.62962 6.93417 6.97180 7.07286 7.66459 7.78515 8.00016 8.10958 8.41641 9.04609 9.62264 11.12831 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038294 B = 0.003287 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.008103 B = 8515.321709 C = 9215.279634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.272 6.272 3 C 0.193 3.807 4 C -0.220 4.220 5 C -0.206 4.206 6 S 0.285 5.715 7 C -0.317 4.317 8 C 0.535 3.465 9 O -0.495 6.495 10 O -0.355 6.355 11 C 0.069 3.931 12 C -0.107 4.107 13 C 0.024 3.976 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.057 0.943 23 H 0.104 0.896 24 H 0.057 0.943 25 H 0.151 0.849 26 H 0.176 0.824 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.275 13.422 0.015 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.184 6.184 3 C 0.133 3.867 4 C -0.254 4.254 5 C -0.344 4.344 6 S 0.552 5.448 7 C -0.435 4.435 8 C 0.380 3.620 9 O -0.386 6.386 10 O -0.273 6.273 11 C -0.005 4.005 12 C -0.145 4.145 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.076 0.924 23 H 0.123 0.877 24 H 0.076 0.924 25 H 0.168 0.832 26 H 0.193 0.807 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.816 13.509 0.014 25.660 hybrid contribution -0.754 -0.561 -0.002 0.940 sum -22.570 12.948 0.012 26.021 Atomic orbital electron populations 1.23208 0.78107 1.04586 1.01365 1.86334 1.21133 1.24123 1.86783 1.18284 0.89859 0.85693 0.92910 1.19963 1.02111 0.90699 1.12597 1.25302 1.00506 1.03860 1.04738 1.83501 1.01000 0.94224 1.66061 1.21814 0.93711 0.98613 1.29342 1.18091 0.82055 0.87440 0.74392 1.90924 1.80691 1.21060 1.45893 1.86154 1.16017 1.40913 1.84168 1.23066 0.88731 0.86609 1.02047 1.21756 0.89504 1.01381 1.01868 1.19049 0.92659 0.91927 0.97694 1.21151 0.90844 0.92976 1.50975 0.92484 1.25030 0.99332 0.94864 0.95260 1.69960 1.31909 1.00987 1.50556 0.86609 0.84250 0.78207 0.78642 1.20190 1.21295 1.20198 0.92447 0.87726 0.92442 0.83170 0.80690 0.91790 0.91796 0.92189 0.92192 0.96225 0.96225 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.94 101.05 1.00 1.17 16 2 O -0.27 -3.60 9.36 -36.53 -0.34 -3.94 16 3 C 0.19 2.44 6.70 -39.98 -0.27 2.17 16 4 C -0.22 -1.90 9.17 -41.29 -0.38 -2.28 16 5 C -0.21 -1.54 10.90 29.12 0.32 -1.22 16 6 S 0.29 2.92 22.82 -107.50 -2.45 0.46 16 7 C -0.32 -4.60 6.28 -38.66 -0.24 -4.84 16 8 C 0.53 9.75 7.72 31.96 0.25 10.00 16 9 O -0.50 -10.38 15.62 -25.55 -0.40 -10.77 16 10 O -0.36 -6.61 9.87 -41.23 -0.41 -7.02 16 11 C 0.07 1.38 5.38 37.16 0.20 1.58 16 12 C -0.11 -2.33 5.52 -26.73 -0.15 -2.48 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 18 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H 0.06 0.32 7.88 -51.93 -0.41 -0.09 16 23 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 24 H 0.06 0.32 7.88 -51.93 -0.41 -0.09 16 25 H 0.15 0.85 6.99 -52.48 -0.37 0.49 16 26 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -34.49 306.79 -7.19 -41.68 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -4.11 Total: -6.14 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 0.18 Total: -9.16 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.74 Total: -26.58 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -1.15 Total: -21.74 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.45 Total: 0.46 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -34.49 -7.19 -41.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730059202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.298 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds