Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35757 * 116.99624 * 2 1 4 4 C 1.37981 * 123.48487 * 0.04931 * 3 2 1 5 5 C 1.33641 * 115.10161 * 179.97438 * 4 3 2 6 6 S 1.70578 * 111.15665 * 359.97438 * 5 4 3 7 7 C 1.37394 * 123.47756 * 179.97438 * 3 2 1 8 8 C 1.41473 * 125.48538 * 0.04393 * 7 3 2 9 9 O 1.21707 * 119.99312 * 359.97312 * 8 7 3 10 10 O 1.34970 * 120.00570 * 179.97438 * 8 7 3 11 11 C 1.42897 * 117.00240 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47108 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46790 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46994 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99562 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00107 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00135 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00088 * 179.97438 * 16 14 13 19 19 H 1.48511 * 109.46959 * 60.00112 * 18 16 14 20 20 H 1.48495 * 109.47550 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47424 * 300.00531 * 18 16 14 22 22 H 1.09004 * 109.47467 * 59.99699 * 1 2 3 23 23 H 1.09008 * 109.46989 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47480 * 299.99369 * 1 2 3 25 25 H 1.08004 * 122.44677 * 359.97438 * 4 3 2 26 26 H 1.08000 * 124.42081 * 180.26623 * 5 4 3 27 27 H 1.09001 * 109.46992 * 299.99861 * 11 10 8 28 28 H 1.08999 * 109.47094 * 59.99142 * 11 10 8 29 29 H 1.08996 * 109.47375 * 299.99700 * 12 11 10 30 30 H 1.09001 * 109.47006 * 60.00589 * 12 11 10 31 31 H 1.08995 * 109.47628 * 299.99849 * 13 12 11 32 32 H 1.08999 * 109.47434 * 60.00299 * 13 12 11 33 33 H 0.96995 * 120.00071 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3654 2.4103 0.0010 5 6 2.1391 3.5000 0.0014 6 16 3.7926 3.0809 0.0012 7 6 3.4104 1.3647 0.0005 8 6 4.3564 0.3128 0.0002 9 8 3.9795 -0.8444 0.0000 10 8 5.6768 0.5926 0.0003 11 6 6.5754 -0.5185 -0.0006 12 6 8.0176 -0.0080 -0.0011 13 6 8.9797 -1.1977 -0.0014 14 6 10.4004 -0.6949 -0.0012 15 1 10.5973 0.3670 -0.0013 16 6 11.4486 -1.5905 -0.0019 17 7 11.2088 -2.8836 -0.0033 18 14 13.2095 -0.9672 -0.0024 19 1 13.4431 -0.1425 1.2104 20 1 14.1434 -2.1218 -0.0038 21 1 13.4422 -0.1416 -1.2146 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 0.2867 2.4655 0.0014 26 1 1.7662 4.5135 0.0063 27 1 6.4044 -1.1247 0.8890 28 1 6.4041 -1.1236 -0.8909 29 1 8.1883 0.5979 -0.8908 30 1 8.1891 0.5972 0.8892 31 1 8.8090 -1.8033 0.8886 32 1 8.8084 -1.8033 -0.8913 33 1 11.9463 -3.5136 -0.0034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730059202.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = -121.500573 kcal Electronic energy + Delta-G solvation = -17561.436280 eV Core-core repulsion = 14485.520481 eV Total energy + Delta-G solvation = -3075.915799 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75044 -40.70161 -37.85968 -37.00643 -35.92257 -33.70950 -31.62135 -29.14546 -28.01611 -26.17094 -25.05675 -23.01104 -22.19854 -20.67110 -19.92987 -18.70270 -18.15438 -17.84189 -17.58925 -16.83135 -16.60230 -16.46495 -15.66812 -15.62806 -14.81972 -14.60936 -14.12148 -14.08721 -13.82565 -13.61057 -13.48008 -12.79354 -12.59685 -12.52484 -12.39463 -12.08014 -12.04739 -11.93785 -11.76506 -11.45081 -11.39747 -11.24702 -10.56556 -9.99467 -9.14991 -8.21034 -6.33238 -0.68212 0.38746 0.85733 1.16290 1.41643 1.45738 1.53501 1.75671 1.89011 2.41525 2.42423 3.12451 3.65174 3.97870 4.00909 4.04778 4.08942 4.29418 4.37664 4.39924 4.58234 4.69391 4.78355 4.83046 4.84695 5.06557 5.08182 5.40180 5.50574 5.62831 5.79726 6.18617 6.18923 6.70362 6.82489 7.36210 8.91285 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.038294 B = 0.003287 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.008103 B = 8515.321709 C = 9215.279634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.311 6.311 3 C 0.202 3.798 4 C -0.228 4.228 5 C -0.164 4.164 6 S 0.290 5.710 7 C -0.381 4.381 8 C 0.532 3.468 9 O -0.540 6.540 10 O -0.354 6.354 11 C 0.079 3.921 12 C -0.091 4.091 13 C 0.026 3.974 14 C -0.544 4.544 15 H 0.067 0.933 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.265 1.265 22 H 0.079 0.921 23 H 0.111 0.889 24 H 0.079 0.921 25 H 0.188 0.812 26 H 0.222 0.778 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.068 0.932 31 H -0.005 1.005 32 H -0.005 1.005 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.551 16.591 0.017 29.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.223 6.223 3 C 0.140 3.860 4 C -0.260 4.260 5 C -0.302 4.302 6 S 0.556 5.444 7 C -0.498 4.498 8 C 0.381 3.619 9 O -0.434 6.434 10 O -0.271 6.271 11 C 0.005 3.995 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.085 0.915 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.189 1.189 22 H 0.097 0.903 23 H 0.130 0.870 24 H 0.097 0.903 25 H 0.205 0.795 26 H 0.239 0.761 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.119 16.700 0.017 28.520 hybrid contribution -0.559 -1.502 -0.003 1.603 sum -23.678 15.198 0.014 28.136 Atomic orbital electron populations 1.23563 0.75268 1.05913 1.03453 1.86285 1.24285 1.25397 1.86296 1.18777 0.89570 0.86888 0.90794 1.20228 1.03875 0.89042 1.12835 1.25860 0.98472 1.05649 1.00213 1.83420 1.03346 0.91163 1.66482 1.21856 0.93894 0.99992 1.34093 1.18720 0.81803 0.88166 0.73178 1.90882 1.80919 1.22959 1.48633 1.86134 1.16643 1.39774 1.84521 1.22706 0.88510 0.86910 1.01351 1.21458 0.89345 0.99379 1.02638 1.18933 0.93695 0.93111 0.95361 1.21597 0.91915 0.93656 1.51048 0.91492 1.26053 1.04518 0.94945 0.94512 1.70108 1.33543 1.02474 1.51380 0.85402 0.77883 0.77810 0.79360 1.18924 1.20905 1.18940 0.90269 0.87043 0.90261 0.79535 0.76086 0.92587 0.92594 0.91306 0.91311 0.98621 0.98623 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.94 113.37 1.13 1.28 16 2 O -0.31 -8.14 9.36 -74.05 -0.69 -8.83 16 3 C 0.20 4.88 6.70 22.01 0.15 5.03 16 4 C -0.23 -3.08 9.17 21.17 0.19 -2.88 16 5 C -0.16 -1.72 10.90 66.78 0.73 -0.99 16 6 S 0.29 5.40 22.82 -56.49 -1.29 4.11 16 7 C -0.38 -11.10 6.28 22.87 0.14 -10.96 16 8 C 0.53 20.34 7.72 68.62 0.53 20.87 16 9 O -0.54 -24.10 15.62 25.01 0.39 -23.71 16 10 O -0.35 -13.65 9.87 -58.88 -0.58 -14.23 16 11 C 0.08 3.34 5.38 71.98 0.39 3.73 16 12 C -0.09 -4.03 5.52 30.59 0.17 -3.86 16 13 C 0.03 1.45 4.97 29.85 0.15 1.59 16 14 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 15 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 18 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 22 H 0.08 0.65 7.88 -2.39 -0.02 0.63 16 23 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.08 0.65 7.88 -2.39 -0.02 0.63 16 25 H 0.19 1.12 6.99 -2.91 -0.02 1.10 16 26 H 0.22 0.30 8.06 -2.91 -0.02 0.27 16 27 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 28 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 29 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -78.50 306.79 5.52 -72.98 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: 1.11 Total: -1.75 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 4.27 Total: -17.34 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.88 Total: -46.77 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.29 Total: 4.11 kcal Total: -78.50 5.52 -72.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730059202.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.522 kcal (2) G-P(sol) polarization free energy of solvation -78.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds