Wall clock time and date at job start Mon Mar 30 2020 01:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76207 * 100.00204 * 2 1 4 4 C 1.36582 * 125.60892 * 180.02562 * 3 2 1 5 5 C 1.39565 * 107.20830 * 179.97438 * 4 3 2 6 6 C 1.38137 * 106.74395 * 0.02562 * 5 4 3 7 7 C 1.41364 * 126.02280 * 179.97438 * 6 5 4 8 8 O 1.21742 * 119.99832 * 359.97438 * 7 6 5 9 9 O 1.35018 * 120.00113 * 179.97438 * 7 6 5 10 10 C 1.42905 * 116.99922 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47060 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47147 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47114 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00045 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99720 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99710 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47282 * 90.00555 * 17 15 13 19 19 H 1.48497 * 109.47337 * 210.00504 * 17 15 13 20 20 H 1.48505 * 109.47194 * 330.00302 * 17 15 13 21 21 O 1.34152 * 125.60153 * 359.97438 * 3 2 1 22 22 H 1.09001 * 109.47162 * 59.99833 * 1 2 3 23 23 H 1.09000 * 109.47217 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46959 * 300.00056 * 1 2 3 25 25 H 1.07998 * 126.39779 * 359.97438 * 4 3 2 26 26 H 1.07994 * 126.63336 * 179.73736 * 5 4 3 27 27 H 1.08997 * 109.46857 * 300.00401 * 10 9 7 28 28 H 1.09006 * 109.46813 * 60.00200 * 10 9 7 29 29 H 1.09001 * 109.47583 * 300.00476 * 11 10 9 30 30 H 1.09006 * 109.47051 * 60.00460 * 11 10 9 31 31 H 1.08997 * 109.46921 * 300.00607 * 12 11 10 32 32 H 1.08998 * 109.46814 * 60.00079 * 12 11 10 33 33 H 0.96992 * 119.99556 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.3477 2.3256 -0.0005 5 6 3.1438 3.7063 -0.0009 6 6 1.7771 3.9068 0.0000 7 6 1.1205 5.1586 0.0004 8 8 1.7714 6.1874 0.0006 9 8 -0.2286 5.2134 0.0008 10 6 -0.8252 6.5120 0.0018 11 6 -2.3488 6.3732 0.0014 12 6 -2.9876 7.7635 0.0031 13 6 -4.4884 7.6267 0.0034 14 1 -4.9413 6.6463 0.0028 15 6 -5.2832 8.7534 0.0043 16 7 -6.5930 8.6340 0.0050 17 14 -4.4998 10.4491 0.0061 18 1 -4.2921 10.8999 -1.3935 19 1 -5.3930 11.4063 0.7070 20 1 -3.1916 10.3893 0.7062 21 8 1.1774 2.6938 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.3013 1.8186 -0.0006 26 1 3.9070 4.4703 0.0026 27 1 -0.5097 7.0560 0.8921 28 1 -0.5101 7.0572 -0.8879 29 1 -2.6640 5.8292 -0.8891 30 1 -2.6643 5.8277 0.8909 31 1 -2.6724 8.3069 0.8938 32 1 -2.6722 8.3093 -0.8861 33 1 -7.1521 9.4266 0.0061 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732861960.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:01 Heat of formation + Delta-G solvation = -78.599627 kcal Electronic energy + Delta-G solvation = -17484.505137 eV Core-core repulsion = 14410.449663 eV Total energy + Delta-G solvation = -3074.055474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.95783 -40.27854 -36.81750 -34.11279 -33.53836 -31.92123 -30.76887 -29.40154 -27.66689 -24.82247 -22.81843 -22.24653 -20.84031 -20.26327 -18.96644 -17.84721 -17.12200 -17.03152 -16.37289 -16.11242 -15.37001 -14.26868 -14.20120 -14.05344 -13.94393 -13.81164 -13.44334 -13.24426 -12.75956 -12.57266 -12.46802 -11.96273 -11.43621 -11.08830 -11.01659 -10.89262 -10.63865 -10.45982 -10.05341 -9.96204 -9.81871 -9.73677 -9.26035 -8.57589 -7.89916 -6.07962 -4.07065 0.38469 0.66853 1.36815 1.80305 2.59957 2.80556 3.16711 3.29467 3.37085 3.40573 4.41127 4.42302 4.65029 4.70168 4.75445 5.02204 5.19350 5.25341 5.32900 5.39655 5.43062 5.44856 5.83104 5.84006 6.19751 6.31173 6.36947 6.59375 6.76600 7.19685 7.31377 7.66649 7.75213 8.48777 8.96156 9.53524 11.05246 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029928 B = 0.003315 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.343295 B = 8445.305281 C = 9349.597905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 S -0.001 6.001 3 C 0.007 3.993 4 C -0.196 4.196 5 C -0.082 4.082 6 C -0.069 4.069 7 C 0.546 3.454 8 O -0.492 6.492 9 O -0.342 6.342 10 C 0.063 3.937 11 C -0.101 4.101 12 C -0.010 4.010 13 C -0.522 4.522 14 H 0.074 0.926 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 O -0.139 6.139 22 H 0.095 0.905 23 H 0.113 0.887 24 H 0.095 0.905 25 H 0.166 0.834 26 H 0.171 0.829 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.018 -17.168 0.014 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.329 4.329 2 S 0.237 5.763 3 C -0.157 4.157 4 C -0.223 4.223 5 C -0.103 4.103 6 C -0.123 4.123 7 C 0.392 3.608 8 O -0.383 6.383 9 O -0.258 6.258 10 C -0.011 4.011 11 C -0.138 4.138 12 C -0.048 4.048 13 C -0.560 4.560 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 O -0.035 6.035 22 H 0.114 0.886 23 H 0.132 0.868 24 H 0.114 0.886 25 H 0.184 0.816 26 H 0.189 0.811 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.325 -17.809 0.018 27.023 hybrid contribution -0.475 2.131 -0.022 2.184 sum 19.850 -15.678 -0.004 25.295 Atomic orbital electron populations 1.23713 0.93659 1.07780 1.07730 1.85970 1.07899 0.90534 1.91857 1.25021 0.90269 0.94372 1.06076 1.21514 0.97392 0.93137 1.10214 1.22206 0.93884 0.96680 0.97512 1.20162 0.91709 0.82810 1.17665 1.17892 0.82003 0.86605 0.74324 1.90975 1.66973 1.33598 1.46785 1.86280 1.19938 1.36523 1.83042 1.23199 0.95390 0.80218 1.02273 1.21569 0.88274 1.01128 1.02850 1.19523 0.96966 0.91559 0.96735 1.21054 0.88698 0.95016 1.51231 0.90823 1.25019 0.94718 0.99246 0.94439 1.69910 1.03536 1.29748 1.50850 0.86776 0.79709 0.84208 0.78614 1.20188 1.21273 1.18937 1.84420 1.34757 1.13711 1.70597 0.88583 0.86810 0.88586 0.81639 0.81140 0.91419 0.91431 0.91523 0.91503 0.96215 0.96649 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 10.08 101.05 1.02 -0.02 16 2 S 0.00 -0.01 22.90 -107.50 -2.46 -2.47 16 3 C 0.01 0.07 7.29 30.13 0.22 0.29 16 4 C -0.20 -1.80 10.82 -39.68 -0.43 -2.23 16 5 C -0.08 -0.88 10.57 -39.12 -0.41 -1.29 16 6 C -0.07 -0.94 6.99 -38.43 -0.27 -1.21 16 7 C 0.55 8.74 7.72 31.92 0.25 8.99 16 8 O -0.49 -8.61 16.57 -19.45 -0.32 -8.93 16 9 O -0.34 -5.88 10.10 -44.19 -0.45 -6.33 16 10 C 0.06 1.11 5.38 37.15 0.20 1.31 16 11 C -0.10 -2.03 5.52 -26.73 -0.15 -2.18 16 12 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 13 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 14 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 17 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 21 O -0.14 -1.79 10.12 -0.42 0.00 -1.79 16 22 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 23 H 0.11 0.48 8.14 -51.92 -0.42 0.05 16 24 H 0.10 0.67 8.14 -51.91 -0.42 0.25 16 25 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 26 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 27 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 28 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 32 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -32.24 309.54 -6.74 -38.98 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.16 Total: -4.07 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.12 Total: -10.07 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.77 Total: -27.04 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.77 Total: -17.05 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.46 Total: -2.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.24 -6.74 -38.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732861960.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.623 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds